The Accumulation and Molecular Effects of Trimethylamine N-Oxide on Metabolic Tissues: It’S Not All Bad
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Shared Cerebral Metabolic Pathology in Non-Transgenic Animal Models of Alzheimer’S And… 233 Intracellularly (Mitochondria, the Target of Toxicity)
Journal of Neural Transmission (2020) 127:231–250 https://doi.org/10.1007/s00702-020-02152-8 NEUROLOGY AND PRECLINICAL NEUROLOGICAL STUDIES - REVIEW ARTICLE Shared cerebral metabolic pathology in non‑transgenic animal models of Alzheimer’s and Parkinson’s disease Jelena Osmanovic Barilar1 · Ana Knezovic1 · Ana Babic Perhoc1 · Jan Homolak1 · Peter Riederer2,3 · Melita Salkovic‑Petrisic1,4 Received: 17 December 2019 / Accepted: 24 January 2020 / Published online: 6 February 2020 © The Author(s) 2020 Abstract Parkinson’s disease (PD) and Alzheimer’s disease (AD) are the most common chronic neurodegenerative disorders, character- ized by motoric dysfunction or cognitive decline in the early stage, respectively, but often by both symptoms in the advanced stage. Among underlying molecular pathologies that PD and AD patients have in common, more attention is recently paid to the central metabolic dysfunction presented as insulin resistant brain state (IRBS) and altered cerebral glucose metabolism, both also explored in animal models of these diseases. This review aims to compare IRBS and alterations in cerebral glucose metabolism in representative non-transgenic animal PD and AD models. The comparison is based on the selectivity of the neurotoxins which cause experimental PD and AD, towards the cellular membrane and intracellular molecular targets as well as towards the selective neurons/non-neuronal cells, and the particular brain regions. Mitochondrial damage and co- expression of insulin receptors, glucose transporter-2 and dopamine transporter on the membrane of particular neurons as well as astrocytes seem to be the key points which are further discussed in a context of alterations in insulin signalling in the brain and its interaction with dopaminergic transmission, particularly regarding the time frame of the experimental AD/ PD pathology appearance and the correlation with cognitive and motor symptoms. -
Chapter 4. Enzyme Kinetics
Chapter 4. Enzyme Kinetics Enzyme Engineering 4.1 Why is enzyme kinetics important? 1. It provides valuable information for enzyme mechanism 2. It gives an insight into the role of an enzyme under physiological conditions 3. It can help show how the enzyme activity is controlled and regulated 1 4.2 How to obtain enzyme kinetics? Measure the formation of product or disappearance of substrate Mg2+ D-Glucose + ATP D-Glucose-6-phosphate + ADP 1. Discontinuous method Add the enzyme, then stop the reaction at different time by adding acid to the sample Measure the concentration of substrate or product using HPLC or other chromatography 4.2 How to obtain enzyme kinetics? 2. Continuous method Mg2+ D-Glucose + ATP D-Glucose-6-phosphate + ADP NADP+ NADPH D-Glucono-δ-lactone 6-phosphate + ADP NADPH absorb at 340nm, while NADP+ does not If a coupled reaction is used, the second reaction should not be rate-limiting (sufficient amount of the enzyme must be provided) Continuous method is not always available 2 4.2 How to obtain enzyme kinetics? Radioactive or fluorescent-labeling is useful Precautions The substrate, buffers, etc. must be extremely pure Enzyme should be pure Enzyme should be stable as the assay is proceeded * Temp, pH must be maintained carefully Once steady state is achieved, reaction rate must be constant and proportional to the enzyme added Initial rate of reaction should be measured to avoid possible complexity 4.3 How to analyze kinetic data? 4.3.1 One substrate reactions k 1 k2 E + S ES E + P k-1 Equilibrium assumption (1913) Second reaction is slower than first reverse reaction (k-1 >> k2) Vmax[S] V0 = Michaelis-Menten eqn K s +[S] [E][S] Vmax = k2[E]0 K = s [ES] 3 4.3 How to analyze kinetic data? Steady state assumption (1925) [ES] is constant Vmax[S] V0 = Km +[S] Vmax = k2[E]0 k2 + k−1 Km = k1 4.3.1 One substrate reactions Lineweaver-Burk equation 1 K 1 1 = m + v [S] Vmax Vmax Eddie-Hofstee equation v V v = max − [S] Km Km 4 4.3.1 One substrate reactions Significance of the result 1. -
Small-Molecule Inhibitors of Pendrin Potentiate the Diuretic Action of Furosemide
BASIC RESEARCH www.jasn.org Small-Molecule Inhibitors of Pendrin Potentiate the Diuretic Action of Furosemide Onur Cil, Peter M. Haggie, Puay-wah Phuan, Joseph-Anthony Tan, and Alan S. Verkman Departments of Medicine and Physiology, University of California San Francisco, San Francisco, California ABSTRACT 2 2 Pendrin is a Cl /HCO3 exchanger expressed in type B and non-A, non-B intercalated cells in the distal 2 nephron, where it facilitates Cl absorption and is involved in Na+ absorption and acid-base balance. Pendrin-knockout mice show no fluid-electrolyte abnormalities under baseline conditions, although mice 2 with double knockout of pendrin and the Na+/Cl cotransporter (NCC) manifest profound salt wasting. Thus, pendrin may attenuate diuretic-induced salt loss, but this function remains unconfirmed. To clarify the physiologic role of pendrin under conditions not confounded by gene knockout, and to test the potential utility of pendrin inhibitors for diuretic therapy, we tested in mice a small-molecule pendrin inhibitor identified from a high-throughput screen. In vitro, a pyrazole-thiophenesulfonamide, PDSinh- 2 C01, inhibited Cl /anion exchange mediated by mouse pendrin with a 50% inhibitory concentration of 1–3 mM, without affecting other major kidney tubule transporters. Administration of PDSinh-C01 to mice at predicted therapeutic doses, determined from serum and urine pharmacokinetics, did not affect urine output, osmolality, salt excretion, or acid-base balance. However, in mice treated acutely with furosemide, + 2 administration of PDSinh-C01 produced a 30% increase in urine output, with increased Na and Cl ex- cretion. In mice treated long term with furosemide, in which renal pendrin is upregulated, PDSinh-C01 produced a 60% increase in urine output. -
Catalase Kinetics
Experiment #4: Catalase Kinetics MASSACHUSETTS INSTITUTE OF TECHNOLOGY Department of Chemistry 5.310 Laboratory Chemistry 1 EXPERIMENT #4 A Study of the Kinetics of the Enzyme Catalase and its Reaction 2 3 With H2O2. A Further Study on Protein Assay Quantitation of Catalase I. OVERVIEW OF THE EXPERIMENT In this experiment, the student will investigate the enzyme activity of catalase by studying the decomposition of H2O2 to form water and oxygen. Using an oxygen based pressure sensor the student measures the amount of oxygen produced and then calculates the rate of the enzyme catalyzed reaction under various conditions. The student also completes a Protein Assay on an unknown sample of catalase using the Coomassie® Plus Protein Assay from Pierce to determine the protein concentration of the sample. The correlation between the actual and calculated concentration gives an indication of the experimental skills used in carrying out the experiment. II. OBJECTIVES This is an integrated experiment that includes topics from physical chemistry and biochemistry. It is designed to introduce students to the basics of: • Studying the effects of reaction environment, including temperature, and varying substrate concentration on the rate of an enzyme-catalyzed reaction. • Combining physical chemistry and biochemistry, principles and theory, with the goal of determining various biochemical and biophysical constants for the enzyme catalase. • How to acquire experimental kinetic data for an enzyme catalyzed reaction. • Learning how to perform data manipulation in order to extract out information such as rate constants from experimental kinetic data. • Correct handling of UV-VIS Spectroscopy 1 This experiment was synthesized by John J. -
Estimation of the Overall Kinetic Parameters of Enzyme Inactivation Using an Isoconversional Method D
Estimation of the overall kinetic parameters of enzyme inactivation using an isoconversional method D. Oancea, Alexandrina Stuparu, Madalina Nita, Mihaela Puiu, Adina Raducan To cite this version: D. Oancea, Alexandrina Stuparu, Madalina Nita, Mihaela Puiu, Adina Raducan. Estimation of the overall kinetic parameters of enzyme inactivation using an isoconversional method. Biophysical Chemistry, Elsevier, 2008, 138 (1-2), pp.50. 10.1016/j.bpc.2008.09.003. hal-00501718 HAL Id: hal-00501718 https://hal.archives-ouvertes.fr/hal-00501718 Submitted on 12 Jul 2010 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. ÔØ ÅÒÙ×Ö ÔØ Estimation of the overall kinetic parameters of enzyme inactivation using an isoconversional method D. Oancea, Alexandrina Stuparu, Madalina Nita, Mihaela Puiu, Adina Raducan PII: S0301-4622(08)00176-2 DOI: doi: 10.1016/j.bpc.2008.09.003 Reference: BIOCHE 5155 To appear in: Biophysical Chemistry Received date: 17 August 2008 Revised date: 2 September 2008 Accepted date: 3 September 2008 Please cite this article as: D. Oancea, Alexandrina Stuparu, Madalina Nita, Mi- haela Puiu, Adina Raducan, Estimation of the overall kinetic parameters of en- zyme inactivation using an isoconversional method, Biophysical Chemistry (2008), doi: 10.1016/j.bpc.2008.09.003 This is a PDF file of an unedited manuscript that has been accepted for publication. -
Determination of Enzyme Kinetics in the Eppendorf Biospectrometer® Kinetic Using a Hexokinase and Glucose-6- Phosphate-Dehydrogenase from Saccharomyces Cerevisiae
USERGUIDE No. 39 I Detection I September 2014 Determination of enzyme kinetics in the Eppendorf BioSpectrometer® kinetic using a hexokinase and glucose-6- phosphate-dehydrogenase from Saccharomyces cerevisiae Martin Armbrecht, Eppendorf AG, Hamburg, Germany Abstract This Userguide will demonstrate measurement of enzyme activity using the Eppendorf BioSpectrometer. In order to optimize the measurement process, preliminary measurements were performed using the method “single continuous”. The actual activity measurements were then performed based on these results. Enzyme activities were determined via linear regression. For the measurements, a coupled reaction of a hexokinase and a glucose-6-phosphate-dehydrogenase from the baker’s yeast ‚ was used. Since the Eppendorf BioSpectrometer kinetic is equipped with a temperature controlled cuvette chamber, temperature dependence of this reaction could also be demonstrated. The highest activity was detected at 37 °C. Introduction Metabolic significance of the hexokinase reaction Activation of glucose via the hexokinase reaction Glycolysis Glucose degradation thus sustains respiration of all living beings. One central area within the metabolism of nearly all living beings is Prior to degradation, glucose needs to be rendered susceptible for the enzymatic degradation of glucose in the cytosol, or cytoplasma, degradation, i.e., activated. This process involves phosphorylation by respectively, in their cells. This process is called glycolysis. Glucose a hexokinase; with the expenditure of ATP, glucose-6-phosphate is is converted to 2 molecules of pyruvate in a stepwise fashion. One produced. Thus, the latter is the actual initial substrate of glycolysis molecule of glucose yields 2 ATP and 2 redox equivalents in the form (fig.1). In addition, glucose-6-phosphate is the initial substrate of a further of NADPH2. -
Effect of Hydrolyzable Tannins on Glucose-Transporter Expression and Their Bioavailability in Pig Small-Intestinal 3D Cell Model
molecules Article Effect of Hydrolyzable Tannins on Glucose-Transporter Expression and Their Bioavailability in Pig Small-Intestinal 3D Cell Model Maksimiljan Brus 1 , Robert Frangež 2, Mario Gorenjak 3 , Petra Kotnik 4,5, Željko Knez 4,5 and Dejan Škorjanc 1,* 1 Faculty of Agriculture and Life Sciences, University of Maribor, Pivola 10, 2311 Hoˇce,Slovenia; [email protected] 2 Veterinary Faculty, Institute of Preclinical Sciences, University of Ljubljana, Gerbiˇceva60, 1000 Ljubljana, Slovenia; [email protected] 3 Center for Human Molecular Genetics and Pharmacogenomics, Faculty of Medicine, University of Maribor, Taborska 8, 2000 Maribor, Slovenia; [email protected] 4 Department of Chemistry, Faculty of Medicine, University of Maribor, Taborska 8, 2000 Maribor, Slovenia; [email protected] (P.K.); [email protected] (Ž.K.) 5 Laboratory for Separation Processes and Product Design, Faculty of Chemistry and Chemical Engineering, University of Maribor, Smetanova 17, 2000 Maribor, Slovenia * Correspondence: [email protected]; Tel.: +386-2-320-90-25 Abstract: Intestinal transepithelial transport of glucose is mediated by glucose transporters, and affects postprandial blood-glucose levels. This study investigates the effect of wood extracts rich in hydrolyzable tannins (HTs) that originated from sweet chestnut (Castanea sativa Mill.) and oak (Quercus petraea) on the expression of glucose transporter genes and the uptake of glucose and HT constituents in a 3D porcine-small-intestine epithelial-cell model. The viability of epithelial cells CLAB and PSI exposed to different HTs was determined using alamarBlue®. qPCR was used to analyze the gene expression of SGLT1, GLUT2, GLUT4, and POLR2A. Glucose uptake was confirmed Citation: Brus, M.; Frangež, R.; by assay, and LC–MS/ MS was used for the analysis of HT bioavailability. -
HER Inhibitor Promotes BRAF/MEK Inhibitor-Induced Redifferentiation in Papillary Thyroid Cancer Harboring BRAFV600E
www.impactjournals.com/oncotarget/ Oncotarget, 2017, Vol. 8, (No. 12), pp: 19843-19854 Research Paper HER inhibitor promotes BRAF/MEK inhibitor-induced redifferentiation in papillary thyroid cancer harboring BRAFV600E Lingxiao Cheng1,*, Yuchen Jin1,*, Min Liu1, Maomei Ruan2, Libo Chen1 1Department of Nuclear Medicine, Shanghai Jiao Tong University Affiliated Sixth People’s Hospital, Shanghai 200233, China 2Department of Nuclear Medicine, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai 200030, China *Co-first authors Correspondence to: Libo Chen, email: [email protected] Keywords: papillary thyroid cancer, redifferentiation, iodine, glucose, dabrafenib Received: October 20, 2016 Accepted: January 24, 2017 Published: February 28, 2017 ABSTRACT Redifferentiation therapy with BRAF/MEK inhibitors to facilitate treatment with radioiodine represents a good choice for radioiodine-refractory differentiated thyroid carcinoma, but recent initial clinical outcomes were modest. MAPK rebound caused by BRAF/MEK inhibitors-induced activation of HER2/HER3 is a resistance mechanism, and combination with HER inhibitor to prevent MAPK rebound may sensitize BRAFV600E- mutant thyroid cancer cells to redifferentiation therapy. To evaluate if inhibiting both BRAF/MEK and HER can produce stronger redifferetiation effect, we tested the effects of BRAF/MEK inhibitor dabrafenib/selumetinib alone or in combination with HER inhibitor lapatinib on the expression and function of iodine- and glucose-handling genes in BRAFV600E-positive BCPAP and K1 cells, using BHP 2-7 cells harboring RET/ PTC1 rearrangement as control. Herein, we showed that lapatinib prevented MAPK rebound and sensitized BRAFV600E-positive papillary thyroid cancer cells to BRAF/ MEK inhibitors. Dabrafenib/selumetinib alone increased iodine-uptake and toxicity and suppressed glucose-metablism in BRAFV600E-positive papillary thyroid cancer cells. -
Interplay Between Metformin and Serotonin Transport in the Gastrointestinal Tract: a Novel Mechanism for the Intestinal Absorption and Adverse Effects of Metformin
INTERPLAY BETWEEN METFORMIN AND SEROTONIN TRANSPORT IN THE GASTROINTESTINAL TRACT: A NOVEL MECHANISM FOR THE INTESTINAL ABSORPTION AND ADVERSE EFFECTS OF METFORMIN Tianxiang Han A dissertation submitted to the faculty of the University of North Carolina at Chapel Hill in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Eshelman School of Pharmacy. Chapel Hill 2013 Approved By: Dhiren R. Thakker, Ph.D. Michael Jay, Ph.D. Kim L. R. Brouwer, Pharm.D., Ph.D. Joseph W. Polli, Ph.D. Xiao Xiao, Ph.D. © 2013 Tianxiang Han ALL RIGHTS RESERVED ii ABSTRACT TIANXIANG HAN: Interplay between Metformin and Serotonin Transport in the Gastrointestinal Tract: A Novel Mechanism for the Intestinal Absorption and Adverse Effects of Metformin (Under the direction of Dhiren R. Thakker, Ph.D.) Metformin is a widely prescribed drug for Type II diabetes mellitus. Previous studies have shown that this highly hydrophilic and charged compound traverses predominantly paracellularly across the Caco-2 cell monolayer, a well-established model for human intestinal epithelium. However, oral bioavailability of metformin is significantly higher than that of the paracellular probe, mannitol (~60% vs ~16%). Based on these observations, the Thakker laboratory proposed a “sponge” hypothesis (Proctor et al., 2008) which states that the functional synergy between apical (AP) transporters and paracellular transport enhances the intestinal absorption of metformin. This dissertation work aims to identify AP uptake transporters of metformin, determine their polarized localization, and elucidate their roles in the intestinal absorption and adverse effects of metformin. Chemical inhibition and transporter-knockdown studies revealed that four transporters, namely, organic cation transporter 1 (OCT1), plasma membrane monoamine transporter (PMAT), serotonin reuptake transporter (SERT) and choline high-affinity transporter (CHT) contribute to AP uptake of metformin in Caco-2 cells. -
Distribution of Glucose Transporters in Renal Diseases Leszek Szablewski
Szablewski Journal of Biomedical Science (2017) 24:64 DOI 10.1186/s12929-017-0371-7 REVIEW Open Access Distribution of glucose transporters in renal diseases Leszek Szablewski Abstract Kidneys play an important role in glucose homeostasis. Renal gluconeogenesis prevents hypoglycemia by releasing glucose into the blood stream. Glucose homeostasis is also due, in part, to reabsorption and excretion of hexose in the kidney. Lipid bilayer of plasma membrane is impermeable for glucose, which is hydrophilic and soluble in water. Therefore, transport of glucose across the plasma membrane depends on carrier proteins expressed in the plasma membrane. In humans, there are three families of glucose transporters: GLUT proteins, sodium-dependent glucose transporters (SGLTs) and SWEET. In kidney, only GLUTs and SGLTs protein are expressed. Mutations within genes that code these proteins lead to different renal disorders and diseases. However, diseases, not only renal, such as diabetes, may damage expression and function of renal glucose transporters. Keywords: Kidney, GLUT proteins, SGLT proteins, Diabetes, Familial renal glucosuria, Fanconi-Bickel syndrome, Renal cancers Background Because glucose is hydrophilic and soluble in water, lipid Maintenance of glucose homeostasis prevents pathological bilayer of plasma membrane is impermeable for it. There- consequences due to prolonged hyperglycemia or fore, transport of glucose into cells depends on carrier pro- hypoglycemia. Hyperglycemia leads to a high risk of vascu- teins that are present in the plasma membrane. In humans, lar complications, nephropathy, neuropathy and retinop- there are three families of glucose transporters: GLUT pro- athy. Hypoglycemia may damage the central nervous teins, encoded by SLC2 genes; sodium-dependent glucose system and lead to a higher risk of death. -
Detection of Errors of Interpretation in Experiments in Enzyme Kinetics
METHODS 24, 181±190 (2001) doi:10.1006/meth.2001.1179, available online at http://www.idealibrary.com on Detection of Errors of Interpretation in Experiments in Enzyme Kinetics Athel Cornish-Bowden1 Institut FeÂdeÂratif ªBiologie Structurale et Microbiologie,º BioeÂnergeÂtique et IngeÂnierie des ProteÂines, Centre National de la Recherche Scientifique, 31 chemin Joseph-Aiguier, B.P. 71, 13402 Marseille Cedex 20, France points necessary for modern users are to be aware (at Although modern statistical computing will often be the method least qualitatively) of the assumptions that underlie of choice for analyzing kinetic data, graphic methods provide an important supplement that ought not to be neglected. Residual the statistical analysis and to be aware also that they plots, or plots of differences between observed and calculated are not always true (2). By contrast we shall be con- values against variables not expected to be correlated with these cerned with methods that require no detailed mathe- differences, permit a rapid judgment of whether data have been matics and can readily be applied to published graphs correctly interpreted and analyzed. The rapid increase in the fre- (or even to graphs displayed on a screen during a lec- quency with which artificially modified or mutated enzymes are ture) without access to the numerical coordinates of studied is making it less and less safe to assume that enzymes the observations. More generally, this article argues for are stable under assay conditions, and there is thus an increased more reliance on common sense and graphic analysis need for methods to check for enzyme stability, and a method and less on automatic analysis performed by computer: for doing this is briefly described. -
Chromatographic Resolution and Kinetic Characterization Of
Proc. NatL Acad. Sci. USA Vol. 80, pp. 8589, January 1983 Biochemistry Chromatographic resolution and kinetic characterization of glucokinase from islets of Langerhans (hexoldnase/islet glucose metabolism /N-acetylglucosamine kdnase/Cibacron blue) MARTIN D. MEGLASSON, PAMELA TRUEHEART BURCH, DONNA K. BERNER, HABIBA NAJAFI, ALAN P. VOGIN, AND FRANZ M. MATSCHINSKY* Diabetes Research Center and Department of Biochemistry and Biophysics, School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104 Communicated by Robert E. Forster, October 4, 1982' ABSTRACT Glucokinase (ATP:D-glucose 6-phosphotransfer- ofislets equals serum glucose and islet glucose 6-phosphate in- ase, EC 2.7.1.2) from rat islets of Langerhans was partially pu- creases in proportion to extracellular glucose (1, 13). Ninety rified by chromatography on DEAE-Cibacron blue F3GA agar- percent ofislet glucose utilization occurs with an apparent glu- ose. The enzyme eluted in two separate peaks. Sigmoidal rate cose affinity constant 11.1 mM (6). Also, mannoheptulose, an dependence was found with respect to glucose (Hill coefficient inhibitor of glucokinase (8), profoundly inhibits islet glucose = 1.5) for both enzyme fractions. K. values for glucose were 5.7 metabolism. (14). mM for the major fraction and 4.5 mM for the minor fraction. The chromatographic separation of glucokinase from other Neither fraction phosphorylated GlcNAc. A' GlcNAc kinase is the most direct (ATP. 2-acetamido-2-deoxy-D-glucose' 6-phosphotransferase; EC glucose phosphorylating enzymes approach 2.7.1.59)-enriched fraction; prepared by affinity chromatography to establish its presence in pancreatic islets. It is the purpose on Sepharose-N46-aminohexanoyl)-GlcNAc, had a K.