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Downloaded the Homologous Hits That Have Coverage Tion for This Species Was Also Available (Tanaka 1919) Scores of > 97% and Identity Scores of 98.5%
Wang et al. Phytopathology Research (2020) 2:35 https://doi.org/10.1186/s42483-020-00076-5 Phytopathology Research REVIEW Open Access Fungal species associated with apple Valsa canker in East Asia Xuli Wang1,2, Cheng-Min Shi3, Mark L. Gleason4 and Lili Huang1* Abstract Since its discovery more than 110 years ago, Valsa canker has emerged as a devastating disease of apple in East Asia. However, our understanding of this disease, particularly the identity of the causative agents, has been in a state of confusion. Here we provide a synopsis for the current understanding of Valsa canker and the taxonomy of its causal agents. We highlight the major changes concerning the identity of pathogens and the conflicting viewpoints in moving to “One Fungus = One Name” system for this group of fungal species. We compiled a list of 21 Cytospora species associated with Malus hosts worldwide and curated 12 of them with rDNA-ITS sequences. The inadequacy of rDNA-ITS in discriminating Cytospora species suggests that additional molecular markers, more intraspecific samples and robust methods are required to achieve reliable species recognition. Keywords: Perennial canker, Cytospora, Species recognition, Nomenclature, Malus Background Valsa canker has emerged as a global threat to apple Apple (Malus domestica Borkh) is one of the most industry (CABI and EPPO 2005; EPPO 2020), and is widely planted and nutritionally important fruit crops in particularly destructive in East Asia (Togashi 1925; Uhm the world (Cornille et al. 2014; Duan et al. 2017). At one and Sohn 1995; Abe et al. 2007; Wang et al. 2011). Its time nearly each area had its own local apple cultivars causative fungus, Valsa mali (Ideta 1909; Tanaka 1919; (Janick et al. -
Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two
(topsheet) Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113. Fieldiana, Botany H. Thorsten Lumbsch Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7881 fax: 312-665-7158 e-mail: [email protected] Sabine M. Huhndorf Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7855 fax: 312-665-7158 e-mail: [email protected] 1 (cover page) FIELDIANA Botany NEW SERIES NO 00 Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 H. Thorsten Lumbsch Sabine M. Huhndorf [Date] Publication 0000 PUBLISHED BY THE FIELD MUSEUM OF NATURAL HISTORY 2 Table of Contents Abstract Part One. Outline of Ascomycota - 2009 Introduction Literature Cited Index to Ascomycota Subphylum Taphrinomycotina Class Neolectomycetes Class Pneumocystidomycetes Class Schizosaccharomycetes Class Taphrinomycetes Subphylum Saccharomycotina Class Saccharomycetes Subphylum Pezizomycotina Class Arthoniomycetes Class Dothideomycetes Subclass Dothideomycetidae Subclass Pleosporomycetidae Dothideomycetes incertae sedis: orders, families, genera Class Eurotiomycetes Subclass Chaetothyriomycetidae Subclass Eurotiomycetidae Subclass Mycocaliciomycetidae Class Geoglossomycetes Class Laboulbeniomycetes Class Lecanoromycetes Subclass Acarosporomycetidae Subclass Lecanoromycetidae Subclass Ostropomycetidae 3 Lecanoromycetes incertae sedis: orders, genera Class Leotiomycetes Leotiomycetes incertae sedis: families, genera Class Lichinomycetes Class Orbiliomycetes Class Pezizomycetes Class Sordariomycetes Subclass Hypocreomycetidae Subclass Sordariomycetidae Subclass Xylariomycetidae Sordariomycetes incertae sedis: orders, families, genera Pezizomycotina incertae sedis: orders, families Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 Introduction Literature Cited 4 Abstract Part One presents the current classification that includes all accepted genera and higher taxa above the generic level in the phylum Ascomycota. -
The Mycobiome of Symptomatic Wood of Prunus Trees in Germany
The mycobiome of symptomatic wood of Prunus trees in Germany Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) Naturwissenschaftliche Fakultät I – Biowissenschaften – der Martin-Luther-Universität Halle-Wittenberg vorgelegt von Herrn Steffen Bien Geb. am 29.07.1985 in Berlin Copyright notice Chapters 2 to 4 have been published in international journals. Only the publishers and the authors have the right for publishing and using the presented data. Any re-use of the presented data requires permissions from the publishers and the authors. Content III Content Summary .................................................................................................................. IV Zusammenfassung .................................................................................................. VI Abbreviations ......................................................................................................... VIII 1 General introduction ............................................................................................. 1 1.1 Importance of fungal diseases of wood and the knowledge about the associated fungal diversity ...................................................................................... 1 1.2 Host-fungus interactions in wood and wood diseases ....................................... 2 1.3 The genus Prunus ............................................................................................. 4 1.4 Diseases and fungal communities of Prunus wood .......................................... -
Mycosphere Essays 19: Recent Advances and Future Challenges in Taxonomy of Coelomycetous Fungi
Mycosphere 8(7): 934–950 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/7/9 Copyright © Guizhou Academy of Agricultural Sciences Mycosphere Essays 19: Recent advances and future challenges in taxonomy of coelomycetous fungi Wijayawardene NN1,2, Papizadeh M3, Phillips AJL4, Wanasinghe DN2, Bhat DJ2, Weerahewa HLD5, Shenoy BD6, Wang Y7 and Huang YQ1 1College of Land and Environment, Shenyang Agricultural University, Shenyang 110866, China. 2Center of Excellence in Fungal Research and School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand 3Microorganisms Bank, Iranian Biological Resource Centre (IBRC), Academic Centre for Education, Culture and Research (ACECR), Tehran, Iran 4Faculty of Sciences, Biosystems and Integrative Sciences Institute (BioISI), University of Lisbon, Campo Grande, 1749-016 Lisbon, Portugal 5Department of Botany, The Open University of Sri Lanka, Nawala, Nugegoda, Sri Lanka 6CSIR-National Institute of Oceanography Regional Centre, Visakhapatnam 530017, Andhra Pradesh, India 7Department of Plant Pathology, Agriculture College, Guizhou University, Guiyang 550025, People’s Republic of China Wijayawardene NN, Papizadeh M, Phillips AJL, Wanasinghe DN, Bhat DJ, Weerahewa HLD, Shenoy BD, Wang Y, Huang YQ 2017 – Mycosphere Essays 19: Recent advances and future challenges in taxonomy of coelomycetous fungi. Mycosphere 8(7), 934–950, Doi 10.5943/mycosphere/8/7/9 Abstract The application of molecular phylogenetic methods has provided a better understanding of the taxonomy and evolution of coelomycetous fungi. Providing taxonomic placements for orphan genera, re-visiting historic genera, resolving species complexes and polyphyletic genera are progressing with new data continually immerging. Taxonomists need to implement the usage of adopted names of pleomorphic fungi after the introduction of Art. -
Additions to the Genus Cytospora with Sexual Morph in Cytosporaceae
Mycosphere 11(1): 189–224 (2020) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/11/1/2 Additions to the genus Cytospora with sexual morph in Cytosporaceae Shang QJ1,2,3, Hyde KD3,4, Camporesi E5, Maharachchikumbura SSN1, Norphanphoun C3,4, Brooks S4, Liu JK1*,2 1 School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, P.R. China 2 Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, P.R. China 3 Centre of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 4 School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand 5 A.M.B. Gruppo Micologico Forlivese, Antonio Cicognani, Via Roma 18, Forlì, Italy Shang QJ, Hyde KD, Camporesi E, Maharachchikumbura SSN, Norphanphoun C, Brooks S, Liu JK 2020 – Additions to the genus Cytospora with sexual morph in Cytosporaceae. Mycosphere 11(1), 189-224, Doi 10.5943/mycosphere/11/1/2 Abstract Cytospora species are important pathogens, which have a worldwide distribution, broad host range and are commonly associated with tree dieback and canker disease. Lack of ex-type cultures or inability to link multi-gene DNA sequence data in GenBank to phylogenetic analyses makes it difficult to classify Cytospora taxa to species level. In this study, ten specimens of Cytospora were collected from dead wood in China, Italy and Thailand. Based on their morphology and phylogenetic characterization, four new species (C. diopuiensis, C. galegicola, C. pingbianensis and C. pubescentis) and four known species (C. cedri, C. -
AR TICLE Recommendations of Generic Names in Diaporthales
IMA FUNGUS · 6(1): 145–154 (2015) [!644"E\ 56!46F6!6" Recommendations of generic names in Diaporthales competing for ARTICLE protection or use / !] G/ 5; WG 3* /G 7; G 4U ] O F U ` #E* GU "!6< @ %!!< Z 79 X !5 < U !_ !< + ; ; Q @ Z % G % Q "#__!Z@/K . [ ^ 5< ; ; Z % > * > FE46_Z@/ 3 + ] 2@ V"_/+Z2 7@ UIU * Z@</./@+ % U 56#64Z@/ [email protected]>/W + % N Z E_4E7GVZ V> F< ; @ Z % W @ ;Q+$__"+ "_66@ / #< % @ S% + < + + % Z % X !7/.!6_6 X / EN W S W ; W ; < W @ @ +Q2Z.Z % > * @ ; ` .@ %E5!!"6X / "G G U + < N @ [ 9 V@ % N><NG/@/V./N;;Q +$6E7_.6!!6_; !6@ V N ;Q+$6E7_.6_6"5+ ; !!< ; W < % N + % S + / @ 5] @ !!_@[ + !5< % @ S% + < + + % Z % X !7/.!6_6 X / !_< > @ W Z % W Q 74E76Z@/ Abstract: N % Key words: DiaporthalesAscomycota, Sordariomycetes / 4" $ $ [/ Ascomycetes O / Fungi Cytospora % Valsa Diaporthe% Phomopsis> V Amphiporthe tiliae, . Coryneum lanciforme, Cytospora brevispora, C. ceratosperma, C. cinereostroma, C. eugeniae, C. fallax, C. myrtagena, Diaporthe amaranthophila, D. annonacearum, D. bougainvilleicola, D. caricae-papayae, D. cocoina, $ D. cucurbitae, D. juniperivora, D. leptostromiformis, D. pterophila, D. theae, D. vitimegaspora, Mastigosporella georgiana, Pilidiella angustispora, P. calamicola, P. pseudogranati, P. stromatica, P. terminaliae. Article info:@ [EU 56!4K/ [5#U -
Recommendations of Generic Names in Diaporthales Competing for Protection Or Use
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by UNL | Libraries University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Papers in Plant Pathology Plant Pathology Department 2015 Recommendations of generic names in Diaporthales competing for protection or use Amy Y. Rossman Gerard C. Adams Paul F. Cannon Lisa A. Castlebury Pedro W. Crous See next page for additional authors Follow this and additional works at: https://digitalcommons.unl.edu/plantpathpapers Part of the Other Plant Sciences Commons, Plant Biology Commons, and the Plant Pathology Commons This Article is brought to you for free and open access by the Plant Pathology Department at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Papers in Plant Pathology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Authors Amy Y. Rossman, Gerard C. Adams, Paul F. Cannon, Lisa A. Castlebury, Pedro W. Crous, Marieka Gryzenhout, Walter M. Jaklitsch, Luis C. Mejia, Dmitar Stoykov, Dhanushka Udayanga, Hermann Voglmayr, and Donald M. Walker IMA FUNGUS · 6(1): 145–154 (2015) [!644"E\ 56!46F6!6" Recommendations of generic names in Diaporthales competing for ARTICLE protection or use / !] G/ 5; WG 3* /G 7; G 4U ] O F U ` #E* GU "!6< @ %!!< Z 79 X !5 < U !_ !< + ; ; Q @ Z % G % Q "#__!Z@/K . [ ^ 5< ; ; Z % > * > FE46_Z@/ 3 + ] 2@ V"_/+Z2 7@ UIU * Z@</./@+ % U 56#64Z@/ [email protected]>/W + % N Z E_4E7GVZ V> F< ; @ Z % -
<I>Cytospora</I>
Persoonia 45, 2020: 1–45 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2020.45.01 Cytospora (Diaporthales) in China X.L. Fan1, J.D.P. Bezerra2, C.M. Tian1, P.W. Crous3 Key words Abstract Members of the genus Cytospora are often reported as endophytes, saprobes or phytopathogens, pri- marily causing canker diseases of woody host plants. They occur on a wide range of hosts and have a worldwide canker disease distribution. Although several species have in the past been reported from China, the vast majority are not known new taxa from culture or DNA phylogeny. The primary aim of the present study was thus to clarify the taxonomy and phylogeny plant pathogen of a large collection of Cytospora species associated with diverse hosts in China. Cytospora spp. were collected in systematics northeast, northwest, north and southwest China, indicating that the cold and dry environments favour these fungi. taxonomy In this paper, we provide an assessment of 52 Cytospora spp. in China, focussing on 40 species represented by Valsa 88 isolates from 28 host genera. Based on a combination of morphology and a six-locus phylogeny (ITS, LSU, act1, rpb2, tef1-α and tub2), 13 new species and one new combination are introduced. The majority of the species investigated here appear to be host-specific, although further collections and pathogenicity studies will be required to confirm this conclusion. Article info Received: 6 December 2018; Accepted: 15 March 2019; Published: 18 June 2019. INTRODUCTION moist conditions, the conidia emerge from the fructifications in the form of yellow, orange to red gelatinous tendrils (Fig. -
AR TICLE Molecular Phylogeny of Cytospora Species Associated With
doi:10.5598/imafungus.2018.09.02.07 IMA FUNGUS · 9(2): 333–370 (2018) Cytospora Molecular phylogeny of species associated with canker diseases ARTICLE of fruit and nut crops in California, with the descriptions of ten new species and one new combination Daniel P. Lawrence1, Leslie A. Holland1, Mohamed T. Nouri2, Renaud Travadon1, Ara Abramians1, Themis J. Michailides2, and Florent P. Trouillas2 1Department of Plant Pathology, University of California, Davis, One Shields Avenue, Davis, CA 95616, USA 2Department of Plant Pathology, University of California, Davis and Kearney Agricultural Research and Extension Centre, Parlier, CA 93648, USA; corresponding author e-mail: ! Abstract: Cytospora species are destructive canker and dieback pathogens of woody hosts in natural and Key words: "[ Cytosporaceae multi-locus sequence typing studies and the lack of sequence data from type specimens in public repositories, Cytospora canker stalling robust phylogenetic reconstructions. In most cases a morphological species concept could not be applied Diaporthales [! multigene phylogeny and fruiting body characters. In this study, we employed a molecular phylogenetic framework with the inclusion new taxa of four nuclear loci (ITS, translation elongation factor 1-alpha, actin, and beta-tubulin) to unveil the biodiversity taxonomy and taxonomy of this understudied important genus of plant pathogens. Phylogenetic inferences based on 150 Californian isolates revealed 15 Cytospora species associated with branch and twig cankers and dieback of almond, apricot, cherry, cottonwood, olive, peach, pistachio, plum, pomegranate, and walnut trees in California. Of #$!#%[ The pathogenic status of the newly described Cytospora species requires further investigation as most species were associated with severe dieback and decline of diverse and economically important fruit and nut crops in California. -
A Canker Agent on Cotinus Coggygria (Anacardiaceae) in Northern China
Cryptogamie, Mycologie, 2014, 35 (3): 211-220 © 2014 Adac. Tous droits réservés Cytospora palm sp. nov. (Diaporthales, Ascomycota), a canker agent on Cotinus coggygria (Anacardiaceae) in Northern China Qing-Tao ZHANGa,b,c, Quan LUa*, Ming HEb, Cony DECOCKd & Xing-Yao ZHANGa aKey Laboratory of Forest Protection, State Forestry Administration; Research Institute of Forest Ecology, Environment and Protection, Chinese Academy of Forestry, Beijing, 100091, China bSchool of Agriculture and Biology, Shanghai Jiaotong University, Shanghai, 200240, China cCollege of Mechanics, Taiyuan University of Technology, Taiyuan, 030024, China dMycothèque de l’Université catholique de Louvain (BCCM / MUCL), Earth and Life Institute – Microbiology, Croix du Sud 2 bte L7.05.06, B-1348 Louvain-la-Neuve, Belgium Abstract – Cytospora palm sp. nov. is described on Cotinus coggygria (Anacardiaceae) in China, on the basis of both morphological and DNA sequence data (ITS and tef1-α). The species is involved in canker disease of C. coggygria. Its key diagnostic characters are gregarious, circular, erumpent conidiomata, locules of a rosette cytosporoid type, with invaginations and 7-10 irregularly disposed chambers sharing common walls, emerging beaks, and conidia 4-4.7 × 1-1.5 µm. The optimum temperature for growth and sporulation is approximately 32°C. Phylogeny / Sordariomycetes / taxonomy / tree canker / Valsaceae INTRODUCTION Cytospora Ehrenberg (1818) was previously associated with the telemorphic genera Valsa Fr., Leucostoma (Nitschke) Höhn., Valseutypella Höhn and Valsella Fuckel. Currently, however, only Valsa is considered (Adams et al., 2005). Cytospora or its teleomorphic form Valsa (Adams et al., 2005) are well-known fungal tree pathogens in family Valsaceae (Ascomycota, Diaporthales) causing mostly canker diseases. -
Revisiting the Genus Cytospora and Allied Species
51 Mycosphere 8(1): 51–97 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/1/7 Copyright © Guizhou Academy of Agricultural Sciences Revisiting the genus Cytospora and allied species Norphanphoun C1,2, Doilom M2, Daranagama DA2, Phookamsak R3, Wen TC1*, Bulgakov TS4 and Hyde KD1,2,3 1 The Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang, 550025, China 2 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100 Thailand 3 World Agroforestry Centre, East and Central Asia, 132 Lanhei Road, Kunming 650201, China 4 Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia Norphanphoun C, Doilom M, Daranagama DA, Phookamsak R, Wen TC, Bulgakov TS, Hyde KD 2017 – Revisiting the genus Cytospora and allied species. Mycosphere 8(1), 51–97, Doi 10.5943/mycosphere/8/1/7 Abstract Cytospora species are important plant pathogens causing dieback and canker diseases on a wide range of hosts, worldwide. However, species level identification is difficult due to poor phylogenetic understanding and lack of sequenced type species. ITS sequence data are only available for most Cytospora strains in GenBank. In this study, samples of Cytospora were collected from symptomatic twigs and branches in European Russia. A combination of morphological characters and multi-gene phylogenetic analysis (ITS, LSU, RPB2, ACT) were used to identify taxa. A total of 34 collections, representing 17 fungal species of Cytospora were studied. Of these, 14 new species are described and illustrated. Three species were known taxa and identified as C. -
AR TICLE Recommendations of Generic Names in Diaporthales
IMA FUNGUs · 6(1): 145–154 (2015) doi:10.5598/imafungus.2015.06.01.09 Recommendations of generic names in Diaporthales competing for ARTICLE protection or use Amy Y. Rossman1, Gerard C. Adams2, Paul F. Cannon3, Lisa A. Castlebury4, Pedro W. Crous5, Marieka Gryzenhout6, Walter M. Jaklitsch7,8, Luis C. Mejia9,10, Dmitar Stoykov11, Dhanushka Udayanga4, Hermann Voglmayr12, and Donald M. Walker13 1Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331, USA; corresponding author e-mail: amydianer@ yahoo.com 2Department of Plant Pathology, University of Nebraska, Lincoln, Nebraska 68503, USA 3Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK 4Systematic Mycology & Microbiology Laboratory, USDA-ARS, Beltsville, Maryland 20705, USA 5CBS-KNAW Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands 6Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein, 9300 South Africa 7Division of Systematic and Evolutionary Botany, Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030 Vienna, Austria 8Institute of Forest Entomology, Forest Pathology and Forest Protection, Dept. of Forest and Soil Sciences, BOKU-University of Natural Resources and Life Sciences, Peter Jordan-Straße 82, 1190 Vienna, Austria 9Center for Cellular and Molecular Biology of Diseases, Institute for Scientific Research and High Technology Services (INDICASAT-AIP), P.O. Box 0843-01103, Panama 10Smithsonian Tropical Research Institute, P.O. Box 0843-03092, Balboa,