Exceptionally Preserved Crustaceans from Western Canada Reveal a Cryptic Cambrian Radiation
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Phylogenetic Analysis of Anostracans (Branchiopoda: Anostraca) Inferred from Nuclear 18S Ribosomal DNA (18S Rdna) Sequences
MOLECULAR PHYLOGENETICS AND EVOLUTION Molecular Phylogenetics and Evolution 25 (2002) 535–544 www.academicpress.com Phylogenetic analysis of anostracans (Branchiopoda: Anostraca) inferred from nuclear 18S ribosomal DNA (18S rDNA) sequences Peter H.H. Weekers,a,* Gopal Murugan,a,1 Jacques R. Vanfleteren,a Denton Belk,b and Henri J. Dumonta a Department of Biology, Ghent University, Ledeganckstraat 35, B-9000 Ghent, Belgium b Biology Department, Our Lady of the Lake University of San Antonio, San Antonio, TX 78207, USA Received 20 February 2001; received in revised form 18 June 2002 Abstract The nuclear small subunit ribosomal DNA (18S rDNA) of 27 anostracans (Branchiopoda: Anostraca) belonging to 14 genera and eight out of nine traditionally recognized families has been sequenced and used for phylogenetic analysis. The 18S rDNA phylogeny shows that the anostracans are monophyletic. The taxa under examination form two clades of subordinal level and eight clades of family level. Two families the Polyartemiidae and Linderiellidae are suppressed and merged with the Chirocephalidae, of which together they form a subfamily. In contrast, the Parartemiinae are removed from the Branchipodidae, raised to family level (Parartemiidae) and cluster as a sister group to the Artemiidae in a clade defined here as the Artemiina (new suborder). A number of morphological traits support this new suborder. The Branchipodidae are separated into two families, the Branchipodidae and Ta- nymastigidae (new family). The relationship between Dendrocephalus and Thamnocephalus requires further study and needs the addition of Branchinella sequences to decide whether the Thamnocephalidae are monophyletic. Surprisingly, Polyartemiella hazeni and Polyartemia forcipata (‘‘Family’’ Polyartemiidae), with 17 and 19 thoracic segments and pairs of trunk limb as opposed to all other anostracans with only 11 pairs, do not cluster but are separated by Linderiella santarosae (‘‘Family’’ Linderiellidae), which has 11 pairs of trunk limbs. -
Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
Ostracoda an Introduction.Pdf
The Ostracoda (from Wikipedia, 5/5/2009: http://en.wikipedia.org/wiki/Ostracod) Ostracoda is a class of the Crustacea, sometimes known as the seed shrimp because of their appearance. Ostracods are small crustaceans, typically around one mm in size, but varying between 0.2 to 30 mm, laterally compressed and protected by a bivalve-like, chitinous or calcareous valve or "shell". The hinge of the two valves is in the upper, dorsal region of the body. Some 65,000 species (13,000 of which are extant taxa) have been identified, grouped into several orders. This group may not be monophyletic. Ostracod taxa are grouped into a Class based on gross morphology. Ecologically, marine ostracods can be part of the zooplankton or (most commonly) they are part of the benthos, living on or inside the upper layer of the sea floor. Many ostracods, especially the Podocopida, are also found in fresh water and some are known from humid continental forest soils. The body consists of a cephalon (head), separated from the thorax by a slight constriction. The segmentation is unclear. The abdomen is regressed or absent whereas the adult gonads are relatively large. There are 5–8 pairs of appendages. The branchial plates are responsible for oxygenation. The epidermal cells may also secrete calcium carbonate after the chitinous layer is formed, resulting in a chalk layer enveloped by chitin. This calcification is not equally pronounced in all orders. During every instar transition, the old carapace (chitinous and calcified) is rejected and a new, larger is formed and calcified. The outer lamella calcifies completely, while the inner lamella calcifies partially, with the rest remaining chitinous. -
788 RR MAKAROV & AI DANILOV (Eds.)
788 R. R. MAKAROV& A. I. DANILOV(eds.), Investigations of the Weddell Gyre. Oceanographic conditions and peculiarities of the development of plankton communities: 140-160 [in Rus- sian]. (VNIRO Publication, Moscow). MAKAROV,R. R. & L. L. MENSHENINA,1992. Larvae of euphausiids off Queen Maud Land. Polar Biology, 11: 515-523. MAKAROV,R. R., L. L. MENSHENINA& V. I. LATOGURSKY,1993. Fishery of Antarctic krill (Euphausia superba Dana) and problems of rational exploitation of its resources. Antarctica, 32: 111-124 [in Russian]. MAKAROV,R. R. & V. A. SPIRIDONOV,1993. Life cycle and distribution of Antarctic krill. Some results of studies and problems. In: N. M. VORONINA(ed.), Pelagic ecosystems of the Southern Ocean: 158-168 [in Russian]. (Nauka, Moscow). BATHMANN,U. V., R. R. MAKAROV,V. A. SPIRIDONOV& G. ROHARDT,1993. Winter distribution and overwintering strategies of the Antarctic copepod species Calanoides acutus, Rhincalanus gigas and Calanus propinquus (Crustacea, Calanoida) in the Weddell Sea. Polar Biology, 13: 333-346. APPLICATION OF ULTRASOUND TECHNOLOGY TO CRUSTACEAN PHYSIOLOGY; MONITORING CARDIAC AND SCAPHOGNATHITE RATES IN BRACHYURA BY PAUL A. HAEFNER, JR. Rochester Institute of Technology, Department of Biology, Rochester, New York 14623, U.S.A. Machines used in diagnostic radiology and cardiology have application to crus- tacean organ systems. Gribble & Reynolds (1993), and Gribble (1994) demon- strated the use of angiography to describe cardiovascular function in a crab. In January 1994, I made preliminary ultrasound scans of a live crayfish. Although sagittal and transverse series of images produced little resolution of internal or- gans, movements of the heart and scaphognathites were easily detected. This paper reveals the ability to monitor the activities of these organs in brachyuran crabs. -
Stomatopod Interrelationships: Preliminary Results Based on Analysis of Three Molecular Loci
Arthropod Systematics & Phylogeny 91 67 (1) 91 – 98 © Museum für Tierkunde Dresden, eISSN 1864-8312, 17.6.2009 Stomatopod Interrelationships: Preliminary Results Based on Analysis of three Molecular Loci SHANE T. AHYONG 1 & SIMON N. JARMAN 2 1 Marine Biodiversity and Biodescurity, National Institute of Water and Atmospheric Research, Private Bag 14901, Kilbirnie, Wellington, New Zealand [[email protected]] 2 Australian Antarctic Division, 203 Channel Highway, Kingston, Tasmania 7050, Australia [[email protected]] Received 16.iii.2009, accepted 15.iv.2009. Published online at www.arthropod-systematics.de on 17.vi.2009. > Abstract The mantis shrimps (Stomatopoda) are quintessential marine predators. The combination of powerful raptorial appendages and remarkably developed sensory systems place the stomatopods among the most effi cient invertebrate predators. High level phylogenetic analyses have been so far based on morphology. Crown-group Unipeltata appear to have diverged in two broad directions from the outset – one towards highly effi cient ‘spearing’ with multispinous dactyli on the raptorial claws (dominated by Lysiosquilloidea and Squilloidea), and the other towards ‘smashing’ (Gonodactyloidea). In a preliminary molecular study of stomatopod interrelationships, we assemble molecular data for mitochondrial 12S and 16S regions, combined with new sequences from the 16S and two regions of the nuclear 28S rDNA to compare with morphological hypotheses. Nineteen species representing 9 of 17 extant families and 3 of 7 superfamilies were analysed. The molecular data refl ect the overall patterns derived from morphology, especially in a monophyletic Squilloidea, a monophyletic Lysiosquilloidea and a monophyletic clade of gonodactyloid smashers. Molecular analyses, however, suggest the novel possibility that Hemisquillidae and possibly Pseudosquillidae, rather than being basal or near basal in Gonodactyloidea, may be basal overall to the extant stomatopods. -
Sub-Regional Report On
EP United Nations Environment UNEP(DEPI)/MED WG 359/Inf.10 Programme October 2010 ENGLISH ORIGINAL: ENGLISH MEDITERRANEAN ACTION PLAN Tenth Meeting of Focal Points for SPAs Marseille, France 17-20 May 2011 Sub-regional report on the “Identification of important ecosystem properties and assessment of ecological status and pressures to the Mediterranean marine and coastal biodiversity in the Adriatic Sea” PNUE CAR/ASP - Tunis, 2011 Note : The designations employed and the presentation of the material in this document do not imply the expression of any opinion whatsoever on the part of UNEP concerning the legal status of any State, Territory, city or area, or of its authorities, or concerning the delimitation of their frontiers or boundaries. © 2011 United Nations Environment Programme 2011 Mediterranean Action Plan Regional Activity Centre for Specially Protected Areas (RAC/SPA) Boulevard du leader Yasser Arafat B.P.337 – 1080 Tunis Cedex E-mail : [email protected] The original version (English) of this document has been prepared for the Regional Activity Centre for Specially Protected Areas by: Bayram ÖZTÜRK , RAC/SPA International consultant With the participation of: Daniel Cebrian. SAP BIO Programme officer (overall co-ordination and review) Atef Limam. RAC/SPA International consultant (overall co-ordination and review) Zamir Dedej, Pellumb Abeshi, Nehat Dragoti (Albania) Branko Vujicak, Tarik Kuposovic (Bosnia ad Herzegovina) Jasminka Radovic, Ivna Vuksic (Croatia) Lovrenc Lipej, Borut Mavric, Robert Turk (Slovenia) CONTENTS INTRODUCTORY NOTE ............................................................................................ 1 METHODOLOGY ....................................................................................................... 2 1. CONTEXT ..................................................... ERREUR ! SIGNET NON DÉFINI.4 2. SCIENTIFIC KNOWLEDGE AND AVAILABLE INFORMATION........................ 6 2.1. REFERENCE DOCUMENTS AND AVAILABLE INFORMATION ...................................... 6 2.2. -
Vertical Distribution and Population Structure of the Three Dominant Planktonic Ostracods (Discoconchoecia Pseudodiscophora
Plankton Biol. Ecol. 49 (2): 66-74, 2002 plankton biology & ecology K> The Plankton Society of Japan 2002 Vertical distribution and population structure of the three dominant planktonic ostracods (Discoconchoecia pseudodiscophora, Orthoconchoecia haddoni and Metaconchoecia skogsbergi) in the Oyashio region, western North Pacific Hideki Kaeriyama & Tsutomu Ikeda Marine Biodiversity Laboratory, Graduate School of Fisheries Sciences, Hokkaido University, 3-1-1, Minato-cho, Hakodate, Hokkaido 041-0821, Japan Received 19 November 2001; accepted 4 April 2002 Abstract: Diel and seasonal vertical distribution and population structure of Discoconchoecia pseu- dodiscophora (Rudjakov), Orthoconchoecia haddoni (Brady & Norman) and Metaconchoecia skogs bergi (lies) were investigated in the Oyashio region during September 1996 through October 1997. Monthly samples were collected with 0.1 mm mesh closing nets hauled vertically through five con tiguous discrete depths between the surface and ~2000 m. D. pseudodiscophora occurred predomi nantly from the base of the thermocline to a depth of 500 m. O. haddoni and M. skogsbergi occurred somewhat deeper at depths of 250 to 1000 m, but were also moderately abundant below 1000 m. Sampling was undertaken both by day and by night during December 1996, April and October 1997 to assess diel vertical migration activity, but revealed no appreciable day/night differences in the ver tical distributions of the ostracods. All the instars sampled [instars II through VIII (adults) of D. pseu dodiscophora and O. haddoni, and instars III through VIII (adults) of M. skogsbergi] were collected throughout the entire period of the study. All three species showed evidence of ontogenetic vertical migration—the ranges of these migrations being from 300-1000 m in D. -
Fatty Acid and Alcohol Composition of the Small Polar Copepods, Oithona and Oncaea : Indication on Feeding Modes
Polar Biol (2003) 26: 666–671 DOI 10.1007/s00300-003-0540-x ORIGINAL PAPER G. Kattner Æ C. Albers Æ M. Graeve S. B. Schnack-Schiel Fatty acid and alcohol composition of the small polar copepods, Oithona and Oncaea : indication on feeding modes Received: 2 April 2003 / Accepted: 28 July 2003 / Published online: 27 August 2003 Ó Springer-Verlag 2003 Abstract The fatty acid and alcohol compositions of the (Paffenho¨ fer 1993). They occur from the polar seas to Antarctic copepods Oithona similis, Oncaea curvata, tropical regions at both hemispheres. Species of both Oncaea antarctica and the Arctic Oncaea borealis were genera can reach high concentrations, exceeding 5,000 determined to provide the first data on their lipid bio- individuals m)3 (Dagg et al. 1980; Koga 1986; chemistry and to expand the present knowledge on their Paffenho¨ fer 1993; Metz 1996). The high abundance of feeding modes and life-cycle strategies. All these tiny these tiny species compensates for the low biomass and, species contained high amounts of wax esters (on average thus, the populations can reach biomass levels of the 51.4–86.3% of total lipid), except females of Oithona same order as dominant calanoid species (Metz 1996). In similis (15.2%). The fatty-acid composition was clearly the Southern Ocean, Oithonidae and Oncaeidae can dominated by 18:1(n-9), especially in the wax-ester-rich account for between 20 and 24% of the total copepod Oncaea curvata (79.7% of total fatty acids). In all species, biomass (Schnack-Schiel et al. 1998). 16:0 and the polyunsaturated fatty acids 20:5(n-3) and The epipelagic species, Oithona similis, has been de- 22:6(n-3), which are structural components of all mem- scribed as the most numerous and widely distributed branes, occurred in significant proportions. -
Taxonomy of Quaternary Deep-Sea Ostracods from the Western North Atlantic Ocean
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln USGS Staff -- Published Research US Geological Survey 2009 Taxonomy Of Quaternary Deep-Sea Ostracods From The Western North Atlantic Ocean Moriaki Yasuhara National Museum of Natural History, Smithsonian Institution, [email protected] Hisayo Okahashi National Museum of Natural History, Smithsonian Institution, [email protected] Thomas M. Cronin U.S. Geological Survey, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/usgsstaffpub Part of the Earth Sciences Commons Yasuhara, Moriaki; Okahashi, Hisayo; and Cronin, Thomas M., "Taxonomy Of Quaternary Deep-Sea Ostracods From The Western North Atlantic Ocean" (2009). USGS Staff -- Published Research. 242. https://digitalcommons.unl.edu/usgsstaffpub/242 This Article is brought to you for free and open access by the US Geological Survey at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in USGS Staff -- Published Research by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. [Palaeontology, Vol. 52, Part 4, 2009, pp. 879–931] TAXONOMY OF QUATERNARY DEEP-SEA OSTRACODS FROM THE WESTERN NORTH ATLANTIC OCEAN by MORIAKI YASUHARA*, HISAYO OKAHASHI* and THOMAS M. CRONIN *Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, MRC 121, PO Box 37012, Washington, DC 20013-7012, USA; e-mails: [email protected] or [email protected] (M.Y.), [email protected] (H.O.) U.S. Geological Survey, -
On the Origin of Misophrioid Copepods from Anchialine
JanH. Stock Memorial Issue ONTHEORIGIN OF MISOPHRIOID COPEPODS FROM ANCHIALINE CAVES BY GEOFF A.BOXSHALL 1) and DAMIAÁ JAUME2 ) 1)TheNatural History Museum, Cromwell Road, London SW7 5BD,U.K. 2 )InstitutoMediterr aneo de Estudios A vanzados(CSIC-UIB), Ctra. V alldemossa,km 7 0 5, E-07071Palma de Mallorca, Spain ABSTRACT Phylogeneticrelationships between the known genera of the order Misophrioida permit the identi®cation of two lineages: one consisting of the family Misophriidae Brady, 1878 which comprisesseven genera, and a new,monotypicfamily, the Palpophriidae Boxshall & Jaume,1999; theother consisting of anothernew family, the Speleophriidae Boxshall & Jaume,1999, comprising eightgenera. Habitat exploitation by these families is discussed: members of the Misophriidae are primarilyhyperbenthic, those of thePalpophriidae and Speleophriidae are primarily cavernicolous inanchialinehabitats. The occurrence of misophriids in littoraland submarine caves is interpreted asevidence of a relativelyrecent landward extension of the habitat range in this family, from ashallow-waterhyperbenthic ancestor. The distribution of speleophriids in anchialine caves is interpretedas resulting from a colonizationepisode prior to the closure of the Tethys Sea. The analysisalso indicates that deep-water forms may represent a secondarycolonization rather than anindication of deep-water ancestry for the entire order. RESUMEN El estudiode las relaciones ® logeneticas entre los distintos g eneros pertenecientes al orden Misophrioidaha permitido la identi®caci on dedos linajes principales: uno compuesto por la familia MisophriidaeBrady, 1878, integrada por siete g eneros, y unafamilia nueva, Palpophriidae Boxshall &Jaume,1999; el otro, integrado por otra nueva familia, Speleophriidae Boxshall & Jaume,1999, compuestapor ocho g eneros. Se discutela explotaci on que del habitat hacen estas familias: los Misophriidaeson primariamente hiperb enticos, mientras que Palpophriidae y Speleophriidaeson cavernõÂcolasen medio anquialino. -
A Subjective Checklist of the Recent, Free-Living, Non-Marine Ostracoda (Crustacea)
Zootaxa 2855: 1–79 (2011) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Monograph ZOOTAXA Copyright © 2011 · Magnolia Press ISSN 1175-5334 (online edition) ZOOTAXA 2855 A subjective checklist of the Recent, free-living, non-marine Ostracoda (Crustacea) KOEN MARTENS1 & SUKONTHIP SAVATENALINTON2 Royal Belgian Institute of Natural Sciences, Freshwater Biology, Vautierstraat 29, Brussels 1000, Belgium and University of Ghent, Department of Biology, K.L. Ledeganckstraat 35, B-9000 Ghent, Belgium Department of Biology, Faculty of Science, Mahasarakham University, Mahasarakham 44150, Thailand. E-mail: [email protected] (corresponding author) Magnolia Press Auckland, New Zealand Accepted by R. Matzke-Karasz: 21 Feb. 2011; published: 29 Apr. 2011 KOEN MARTENS & SUKONTHIP SAVATENALINTON A subjective checklist of the Recent, free-living, non-marine Ostracoda (Crustacea) (Zootaxa 2855) 79 pp.; 30 cm. 29 Apr. 2011 ISBN 978-1-86977-671-8 (paperback) ISBN 978-1-86977-672-5 (Online edition) FIRST PUBLISHED IN 2011 BY Magnolia Press P.O. Box 41-383 Auckland 1346 New Zealand e-mail: [email protected] http://www.mapress.com/zootaxa/ © 2011 Magnolia Press All rights reserved. No part of this publication may be reproduced, stored, transmitted or disseminated, in any form, or by any means, without prior written permission from the publisher, to whom all requests to reproduce copyright material should be directed in writing. This authorization does not extend to any other kind of copying, by any means, in any form, and for any purpose other than private research use. ISSN 1175-5326 (Print edition) ISSN 1175-5334 (Online edition) 2 · Zootaxa 2855 © 2011 Magnolia Press MARTENS & SAVATENALINTON Table of contents Abstract . -
Zooplankton Community Dynamics in Temporary Mediterranean Wetlands: Which Drivers Are Controlling the Seasonal Species Replacement?
water Article Zooplankton Community Dynamics in Temporary Mediterranean Wetlands: Which Drivers Are Controlling the Seasonal Species Replacement? Juan Diego Gilbert 1, Inmaculada de Vicente 2, Fernando Ortega 1 and Francisco Guerrero 1,3,* 1 Departamento de Biología Animal, Biología Vegetal y Ecología, Campus de Las Lagunillas s/n., 23071 Jaén, Spain; [email protected] (J.D.G.); [email protected] (F.O.) 2 Departamento de Ecología, Campus de Fuentenueva s/n., 18071 Granada, Spain; [email protected] 3 Centro de Estudios Avanzados en Ciencias de la Tierra, Energía y Medio Ambiente, Campus de las Lagunillas s/n., 23071 Jaén, Spain * Correspondence: [email protected] Abstract: Temporary Mediterranean wetlands are characterized by both intra and interannual varia- tions in their environmental conditions. These inherent fluctuations in limnological features affect the seasonal variation in the structure and dynamics of the aquatic communities. In this study, we hypothesized that zooplankton community is coupled to seasonal changes of the environmental variables along the hydroperiod. To get this purpose, the study was focused in monitoring, by collecting monthly samples during an annual period, seven temporary Mediterranean ponds lo- cated in the south-eastern region of the Iberian Peninsula (Alto Guadalquivir region, Andalusia). The relationships between zooplankton community and the different limnological variables were analyzed based on two approaches: a Spearman correlation analysis and a correspondence canonical Citation: Gilbert, J.D.; de Vicente, I.; analysis (CCA). The results have shown that chlorophyll-a concentration, Secchi depth, total nitrogen Ortega, F.; Guerrero, F. Zooplankton concentration, wetland area and depth were the variables with a greater influence on the zooplankton Community Dynamics in Temporary community, explaining the zooplankton species replacement.