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Selective and Specific Ion Binding on Proteins at Physiologically-Relevant
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector FEBS Letters 585 (2011) 3126–3132 journal homepage: www.FEBSLetters.org Selective and specific ion binding on proteins at physiologically-relevant concentrations ⇑ Linlin Miao a, Haina Qin a, Patrice Koehl a,b, Jianxing Song a,c, a Department of Biological Sciences, Faculty of Science, National University of Singapore, Singapore b Department of Computer Science and Genome Center, University of California, Davis, CA 95616, USA c Department of Biochemistry, Yong Loo Lin School of Medicine and National University of Singapore, 10 Kent Ridge Crescent, Singapore 119260, Singapore article info abstract Article history: Insoluble proteins dissolved in unsalted water appear to have no well-folded tertiary structures. Received 30 July 2011 This raises a fundamental question as to whether being unstructured is due to the absence of salt Revised 25 August 2011 ions. To address this issue, we solubilized the insoluble ephrin-B2 cytoplasmic domain in unsalted Accepted 29 August 2011 water and first confirmed using NMR spectroscopy that it is only partially folded. Using NMR HSQC Available online 6 September 2011 titrations with 14 different salts, we further demonstrate that the addition of salt triggers no signif- Edited by Miguel De la Rosa icant folding of the protein within physiologically relevant ion concentrations. We reveal however that their 8 anions bind to the ephrin-B2 protein with high affinity and specificity at biologically-rel- evant concentrations. Interestingly, the binding is found to be both salt- and residue-specific. Keywords: Insoluble protein Ó 2011 Federation of European Biochemical Societies. -
Goverdhan Mehta Chemistry - a 21St Century Science for Global Sustainability: Is It Future Ready?
Goverdhan Mehta Chemistry - A 21st Century Science for Global Sustainability: Is it future ready? Goverdhan Mehta A ‘selfie’ with theSchool chemical of Chemistry world…… University of Hyderabad National Geophysical Research Institute, CSIR Foundation Day, Sept. 27, 2019 Introducing Chemistry through the Lens of Earth's Systems: What Role Can Systems Thinking Play in Developing Chemically and Environmentally Literate Citizens? J. Kornfeld, S. Stokoe. J. Chemical Education 2019, 96, 2910-2917 A bouquet of ‘matters’ that matter New symbols Passion Sustainability Legacies Ethics & values Responsible Connections Systems Directions Humility Ideas & icons Inspirations Un mélange de beaucoup de choses “Chemistry ought not to be for chemists alone” - Miguel de Unamuno ‘…Life, Universe and Everything’ Chemistry – a source of happiness…. Chem -Connectome ‘...I feel sorry for people who don’t know anything about chemistry. They are missing an important source of happiness....’ - Linus Pauling 1901-1994 S.A. Matlin, G. Mehta, H. Hopf. Chemistry Embraced by All. Science 2015, 347, 1179 Chemistry is in everything. and everything is in it, it is the basis of life, without it we wouldn't exist. Green tea has ~ 200 chemicals Coffee has ~ 1000 chemicals Wine has >1000 chemicals Light cigarette ~ 4000 chemicals Chemistry is ubiquitous/omnipresent Chemistry – Tracing the roots and to the present BCE Art & craft of mixing substances A giant knowledge leap Alchemy to modern science Evidence based science Discipline in a Table - systematization Mendeleev’s Periodic Law ‘Molecularization’ of chemical matter 20th Century A century of evolutionary march of chemistry 20h Century Value added products from almost anything “Utility science” and everything Molecular understanding of life processes and “Core Science” chemical matter Interdisciplinarity in forefront “Integrative Science” Resource stressed planet “Sustainability Science” 21st Century S. -
The Lock-And-Key Analogy in 20Th Century Biochemistry
From: Rebecca Mertens The Construction of Analogy-Based Research Programs The Lock-and-Key Analogy in 20th Century Biochemistry April 2019, 224 p., pb., ill. 34,99 € (DE), 978-3-8376-4442-5 E-Book: PDF: 34,99 € (DE), ISBN 978-3-8394-4442-9 When the German chemist Emil Fischer presented his lock-and-key hypothesis in 1899, his analogy to describe the molecular relationship between enzymes and substrates quickly gained vast influence and provided future generations of scientists with a tool to investigate the relation between chemical structure and biological specificity. Rebecca Mertens explains the appeal of the lock-and-key analogy by its role in model building and in the construction of long-term, cross-generational research programs. She argues that a crucial feature of these research programs, namely ascertaining the continuity of core ideas and concepts, is provided by a certain way of analogy-based modelling. Rebecca Mertens (PhD), born in 1984, is a postdoctoral researcher in the history and philosophy of science at the University of Bielefeld, Germany. She works on the role of analogies, models and forms of comparison in the history of molecular genetics and is a member of the collaborative research program "Practices of ComparisonÚ Ordering and Changing the World". During her graduate and doctoral studies, she was a visiting scholar at the École Normale Supérieure in Paris and a visiting graduate fellow at the Minnesota Center for Philosophy of Science. For further information: www.transcript-verlag.de/en/978-3-8376-4442-5 © 2019 -
Peptide Chemistry up to Its Present State
Appendix In this Appendix biographical sketches are compiled of many scientists who have made notable contributions to the development of peptide chemistry up to its present state. We have tried to consider names mainly connected with important events during the earlier periods of peptide history, but could not include all authors mentioned in the text of this book. This is particularly true for the more recent decades when the number of peptide chemists and biologists increased to such an extent that their enumeration would have gone beyond the scope of this Appendix. 250 Appendix Plate 8. Emil Abderhalden (1877-1950), Photo Plate 9. S. Akabori Leopoldina, Halle J Plate 10. Ernst Bayer Plate 11. Karel Blaha (1926-1988) Appendix 251 Plate 12. Max Brenner Plate 13. Hans Brockmann (1903-1988) Plate 14. Victor Bruckner (1900- 1980) Plate 15. Pehr V. Edman (1916- 1977) 252 Appendix Plate 16. Lyman C. Craig (1906-1974) Plate 17. Vittorio Erspamer Plate 18. Joseph S. Fruton, Biochemist and Historian Appendix 253 Plate 19. Rolf Geiger (1923-1988) Plate 20. Wolfgang Konig Plate 21. Dorothy Hodgkins Plate. 22. Franz Hofmeister (1850-1922), (Fischer, biograph. Lexikon) 254 Appendix Plate 23. The picture shows the late Professor 1.E. Jorpes (r.j and Professor V. Mutt during their favorite pastime in the archipelago on the Baltic near Stockholm Plate 24. Ephraim Katchalski (Katzir) Plate 25. Abraham Patchornik Appendix 255 Plate 26. P.G. Katsoyannis Plate 27. George W. Kenner (1922-1978) Plate 28. Edger Lederer (1908- 1988) Plate 29. Hennann Leuchs (1879-1945) 256 Appendix Plate 30. Choh Hao Li (1913-1987) Plate 31. -
A Global Review on Short Peptides: Frontiers and Perspectives †
molecules Review A Global Review on Short Peptides: Frontiers and Perspectives † Vasso Apostolopoulos 1 , Joanna Bojarska 2,* , Tsun-Thai Chai 3 , Sherif Elnagdy 4 , Krzysztof Kaczmarek 5 , John Matsoukas 1,6,7, Roger New 8,9, Keykavous Parang 10 , Octavio Paredes Lopez 11 , Hamideh Parhiz 12, Conrad O. Perera 13, Monica Pickholz 14,15, Milan Remko 16, Michele Saviano 17, Mariusz Skwarczynski 18, Yefeng Tang 19, Wojciech M. Wolf 2,*, Taku Yoshiya 20 , Janusz Zabrocki 5, Piotr Zielenkiewicz 21,22 , Maha AlKhazindar 4 , Vanessa Barriga 1, Konstantinos Kelaidonis 6, Elham Mousavinezhad Sarasia 9 and Istvan Toth 18,23,24 1 Institute for Health and Sport, Victoria University, Melbourne, VIC 3030, Australia; [email protected] (V.A.); [email protected] (J.M.); [email protected] (V.B.) 2 Institute of General and Ecological Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego˙ 116, 90-924 Lodz, Poland 3 Department of Chemical Science, Faculty of Science, Universiti Tunku Abdul Rahman, Kampar 31900, Malaysia; [email protected] 4 Botany and Microbiology Department, Faculty of Science, Cairo University, Gamaa St., Giza 12613, Egypt; [email protected] (S.E.); [email protected] (M.A.) 5 Institute of Organic Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego˙ 116, 90-924 Lodz, Poland; [email protected] (K.K.); [email protected] (J.Z.) 6 NewDrug, Patras Science Park, 26500 Patras, Greece; [email protected] 7 Department of Physiology and Pharmacology, -
Named Organic Reactions (U – Z)
Dr. John Andraos, http://www.careerchem.com/NAMED/Named-Rxns(U-Z).pdf 1 NAMED ORGANIC REACTIONS (U – Z) © Dr. John Andraos, 2000 - 2014 Department of Chemistry, York University 4700 Keele Street, Toronto, ONTARIO M3J 1P3, CANADA For suggestions, corrections, additional information, and comments please send e-mails to [email protected] http://www.chem.yorku.ca/NAMED/ Sakae Uemura Japanese, b. Japan Uemura oxidation Nishimura, T.; Onoue, T.; Ohe, K.; Uemura S. Tetrahedron Lett. 1998 , 39 , 6011 Nishimura, T.; Onoue, T.; Ohe, K.; Uemura S. J. Org. Chem. 1999 , 64 , 6750 Biographical references: Ivar Karl Ugi 5 September 1930 – 29 September 2005 German, b. Kuressaare, Estland, Germany Ugi condensation Ugi, I.; Meyr, R.; Fetzer, U.; Steinbrueckner, C. Angew. Chem. 1959 , 71 , 386 Urban, R.; Ugi, I., Angew. Chem. Int. Engl. Ed . 1975 , 14 , 61 Biographical references: Chemical Research Faculties: An International Directory 1996 , American Chemical Society: Washington, D.C., 1996 Wer ist Wer? Das Deutsche Who’s Who 1999/2000 , Schmidt-Römhild: Lübeck, 1999 Lemmen, P.; Fontain, E.; Bauer, J. Angew. Chem. Int. Ed. 2006 , 45 , 193 Fritz Ullmann 2 July 1875 - 17 March 1939 German, b. Fürth, Germany Ullmann reaction Ullmann, F. Ann. Chem . 1904 , 332 , 38 Dr. John Andraos, http://www.careerchem.com/NAMED/Named-Rxns(U-Z).pdf 2 Biographical references: Meyer, K.H., Helv. Chim. Acta 1940 , 23 , 93 Upjohn reaction Van Rheenen, V.; Kelly, R.C.; Cha, D.Y. Tetrahedron Lett. 1976 , 1973 A. Verley French, b. ? Meerwein-Pondorff-Verley reduction see Hans Leberecht Meerwein Biographical references: Victor Villiger 1 September 1868 - 1934 Swiss, b. -
Otto Hahn Otto Hahn
R.N. 70269/98 Postal Registration No.: DL-SW-1/4082/15-17 ISSN : 0972-169X Date of posting: 26-27 of advance month Date of publication: 24 of advance month May 2017 Vol. 19 No. 8 Rs. 5.00 Otto Hahn Discoverer of Nuclear Fission Editorial: Consolidating 35 science communication activities in our country Otto Hahn: Discoverer of 34 Nuclear Fission Keep Your Eyes Healthy 31 Phenol: A Serious 30 Environmental Threat Accidental Discoveries in 28 Medical Science Cures for haemorrhoids— 24 Simple treatments and Surgeries Recent developments 21 in science and technology 36 Editorial Consolidating science communication activities in our country Dr. R. Gopichandran It is well known that the National Council of Science Museums of India’s leadership in science technology and innovation (STI) across the Ministry of Culture, Government of India, the National Institute the bilateral and multilateral framework also. The news feature service of Science Communication and Information Resources (NISCAIR) and the portal activity have well defined action plans to reach out to of CSIR, the National Council for Science and Technology fellow institutions and citizens with suitably embellished platform Communication (NCSTC) of the Department of Science and and opportunities for all to deliver together. Technology (DST), Government of India and Vigyan Prasar, also While these are interesting and extremely important, especially of DST, have been carrying out excellent science communication because they respond to the call to upscale and value add science activities over the years. It cannot be denied that the reach has been and technology communication, it is equally important to document quite significant collectively. -
Antibodies with Some Bite Antibodies Have Yet to Be Determined, It Is Reasonable to Suppose That the Ester Or David E
-~-------------------------------------N8NSANDVIEWS----------------_N_A_TU_R_E_V-O_L_._32_5_22_J_A_N_U_A_RY__ 19~87 Enzyme catalysis kinetics and is subject to competitive inhibition. Although the detailed chemical mechanisms of these catalytic Antibodies with some bite antibodies have yet to be determined, it is reasonable to suppose that the ester or David E. Hansen carbamate is strained towards a tetra hedral geometry on binding, thus facilitat THE spectacular specificities and rate William Jencks', more directly, stated in ing the attack of the hydroxide ion. Fur enhancements of enzymes are without 1969 thermore, the Scripps group has already equal among all known catalysts. It is no If complementarity between active site and found that their antibody can act via both wonder then that the design of new en transition state contributes significantly to nucleophilic and general base catalysis, zymes has long been a goal of biochemists. enzyme catalysis, it should be possible to syn depending on the substrate used. Now two independent groups, one led by thesize an enzyme by constructing a binding The fact that this approach succeeded at Alfonso Tramontano and Richard Lerner site. One way to do this is to prepare an anti all gives great hope to those attempting to of the Scripps Clinic and Research Foun body to a haptenic group which resembles the isolate even more efficient antibody cat dation', and the other by Peter Schultz of transition state of a given reaction. The com alysts by this and by other strategies. In the University of California at Berkeley\ bining sites of such antibodies should be com addition, it may be possible to modify have taken steps towards this goal by plementary to the transition state and should cause an acceleration by forcing bound sub existing catalytic antibodies. -
Wilhelm Ostwald – the Scientist
ARTICLE-IN-A-BOX Wilhelm Ostwald – The Scientist Friedrich Wilhelm Ostwald was born on September 2, 1853 at Riga, Latvia, Russia to Gottfried Ostwald, a master cooper and Elisabeth Leuckel. He was the second son to his parents who both were descended from German immigrants. He had his early education at Riga. His subsequent education was at the University of Dorpat (now Tartu, Estonia) where he enrolled in 1872. At the university he studied chemistry under the tutelage of Carl ErnstHeinrich Schmidt (1822– 1894) who again was a pupil of Justus von Liebig. Besides Schmidt, Johannes Lemberg (1842– 1902) and Arthur von Oettingen (1836–1920) who were his teachers in physical chemistry were also principal influences. It was in 1877 that he defended his thesis ‘Volumchemische Studien über Affinität’. Subsequently he taught as Privatdozent for a couple of years. During this period, his personal life saw some changes as well. He wedded Helene von Reyher (1854–1946) in 1880. With Helene, he had three sons, and two daughters. Amongst his children, Wolfgang went on to become a famous colloid chemist. On the strength of recommendation from Dorpat, Ostwald was appointed as a Professor at Riga Polytechnicum in 1882. He worked on multiple applications of the law of mass action. He also conducted measurements in chemical reaction kinetics as well as conductivity of solutions. To this end, the pyknometer was developed which was used to determine the density of liquids. He also had a thermostat built and both of these were named after him. He was prolific in his teaching and research which helped establish a school of science at the university. -
CV Sir Arthur Harden
Curriculum Vitae Prof. Dr. Arthur Harden Name: Sir Arthur Harden Lebensdaten: 12. Oktober 1865 ‐ 17. Juni 1940 Arthur Harden war ein britischer Chemiker. Nach ihm sind die Harden‐Young‐Ester (Zuckerphospha‐ te) benannt. Für seine Forschungen über die Gärung von Zucker und dessen Gärungsenzyme wurde er im Jahr 1929 gemeinsam mit dem deutsch‐schwedischen Chemiker Hans von Euler‐Chelpin mit dem Nobelpreis für Chemie ausgezeichnet. Werdegang Arthur Harden studierte von 1882 bis 1885 Chemie am Owens College der University of Manchester. 1868 ging er mit einem Dalton Scholarship an die Universität Erlangen, um beim Chemiker Otto Fi‐ scher, einem Vetter von Emil Fischer (Nobelpreis für Chemie 1902), zu arbeiten. Dort wurde er 1888 promoviert. Im Anschluss arbeitete er als Dozent am Owens College. Ab 1897 war er am neu gegrün‐ deten British Jenner Institute of Preventive Medicine tätig. 1907 wurde er dort Leiter der Abteilung Biochemie. Außerdem erhielt er 1912 eine Professur für Biochemie an der University of London. Auch nach seiner Emeritierung im Jahr 1930 blieb Harden wissenschaftlich aktiv. So befasste er sich unter anderem mit dem Stoffwechsel von E.coli‐Bakterien sowie mit der Gärung. Gemeinsam mit dem deutsch‐schwedischen Wissenschaftler Hans von Euler‐Chelpin gelang es ihm, diesen Vorgang vollständig aufzuklären. Nobelpreis für Chemie 1929 Die Aufklärung der Gärung als eine der ältesten biologischen Technologien der Menschheit hatte bereits zuvor viele Wissenschaftler zu Forschungsarbeiten angeregt, unter ihnen Louis Pasteur und Justus Freiherr von Liebig. Arthur Harden wurde für seine Forschungen über die Gärung von Zucker und die daran beteiligten Gärungsenzyme im Jahr 1929 gemeinsam mit Hans von Euler‐Chelpin mit dem Nobelpreis für Chemie ausgezeichnet. -
A Nobel Synthesis
MILESTONES IN CHEMISTRY Ian Grayson A nobel synthesis IAN GRAYSON Evonik Degussa GmbH, Rodenbacher Chaussee 4, Hanau-Wolfgang, 63457, Germany he first Nobel Prize for chemistry was because it is a scientific challenge, as he awarded in 1901 (to Jacobus van’t Hoff). described in his Nobel lecture: “The synthesis T Up to 2010, the chemistry prize has been of brazilin would have no industrial value; awarded 102 times, to 160 laureates, of whom its biological importance is problematical, only four have been women (1). The most but it is worth while to attempt it for the prominent area for awarding the Nobel Prize sufficient reason that we have no idea how for chemistry has been in organic chemistry, in to accomplish the task” (4). which the Nobel committee includes natural Continuing the list of Nobel Laureates in products, synthesis, catalysis, and polymers. organic synthesis we arrive next at R. B. This amounts to 24 of the prizes. Reading the Woodward. Considered by many the greatest achievements of the earlier organic chemists organic chemist of the 20th century, he who were recipients of the prize, we see that devised syntheses of numerous natural they were drawn to synthesis by the structural Alfred Nobel, 1833-1896 products, including lysergic acid, quinine, analysis and characterisation of natural cortisone and strychnine (Figure 1). 6 compounds. In order to prove the structure conclusively, some In collaboration with Albert Eschenmoser, he achieved the synthesis, even if only a partial synthesis, had to be attempted. It is synthesis of vitamin B12, a mammoth task involving nearly 100 impressive to read of some of the structures which were deduced students and post-docs over many years. -
Thieme-Chemistry.Com
SynformPeople, Trends and Views in Chemical Synthesis 2017/12 Biomimetic Synthesis of Bipleiophylline Highlighted article by D. Lachkar, N. Denizot, G. Bernadat, K. Ahamada, M. A. Beniddir, V. Dumontet, J.-F. Gallard, R. Guillot, K. Leblanc, E. Otogo N‘nang, V. Turpin, C. Kouklovsky, E. Poupon, L. Evanno, G. Vincent Contact Your opinion about Synform is welcome, please correspond if you like: [email protected] Thieme A195 Synform Dear Readers, Here we go again with another December issue, another In this issue year is gone and Christmas is already looming. I can’t even remember when I had the last white Christmas, Editorial Board Focus Editorial Board Focus: Dr. Margaret Faul perhaps it was in 2010. Sadly, snow has become an (Amgen, USA). .A196 incredibly rare event in many places in Europe. What everybody – children or grown-ups makes no differ- Literature Coverage Biomimetic Synthesis of Bipleiophylline ................A198 ence – expects and craves is a peaceful Christmas day with relatives and friends, sitting for hours all together, Literature Coverage chatting and eating awfully large amounts of food, with Metal-Catalyzed Electrochemical Diazidation of Alkenes .......................................................A202 the snow falling outside the window. Nobody wants a sunny and dry Christmas day with mild temperatures, Young Career Focus unless you are on holiday in a tropical place! What kind Young Career Focus: Professor Dr. Michal Juríček (University of Zurich, Switzerland) .....................A205 of Christmas is that!!! But that’s what we have been experiencing more and more frequently during the last Name Reaction Bio couple of decades. And someone is still convinced that Independent Discoveries: The Wolff–Kishner Reduction ....................................................A208 climate change is not real… Hopefully – regardless of the snow – this was a good year for most – if not all – of Coming soon .................................................A213 you.