Insect Sampling in Forest Ecosystems
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Oomycete Metabarcoding Reveals the Presence of Lagenidium Spp. in Phytotelmata
Oomycete metabarcoding reveals the presence of Lagenidium spp. in phytotelmata Paula Leoro-Garzon, Andrew J. Gonedes, Isabel E. Olivera and Aurélien Tartar Department of Biological Sciences, Nova Southeastern University, Fort Lauderdale, FL, United States of America ABSTRACT The oomycete genus Lagenidium, which includes the mosquito biocontrol agent L. gi- ganteum, is composed of animal pathogens, yet is phylogenetically closely related to the well characterized plant pathogens Phytophthora and Pythium spp. These phylogenetic affinities were further supported by the identification of canonical oomycete effectors in the L. giganteum transcriptome. In this study, culture-independent, metabarcoding analyses aimed at detecting L. giganteum in bromeliad phytotelmata (a proven mosquito breeding ground) microbiomes were performed. Two independent and complementary microbial detection strategies based on the amplification of cox1 DNA barcodes were used and produced globally concordant outcomes revealing that two distinct Lagenidium phylotypes are present in phytotelmata. A total of 23,869 high quality reads were generated from four phytotelmata, with 52%, and 11.5% of these reads taxonomically associated to oomycetes, and Lagenidium spp., respectively. Newly designed Lagenidium-specific cox1 primers combined with cloning/Sanger sequencing produced only Lagenidium spp. sequences, with a majority of variants clustering with L. giganteum. High throughput sequencing based on a Single Molecule Real Time (SMRT) approach combined with broad range cox1 oomycete primers confirmed the presence of L. giganteum in phytotelmata, but indicated that a potentially novel Lagenidium phylotype (closely related to L. humanum) may represent one of the most prevalent oomycetes in these environments (along with Pythium spp.). Phylogenetic analyses demonstrated that all detected Lagenidium phylotype cox1 sequences clustered Submitted 2 July 2019 in a strongly supported, monophyletic clade that included both L. -
How to Cite Complete Issue More Information About This
Acta Scientiarum. Biological Sciences ISSN: 1679-9283 ISSN: 1807-863X [email protected] Universidade Estadual de Maringá Brasil Teixeira, Ana Paula; Silva, Paulo Fernandes Roges Souza; de Souza, João Paulo Francisco; Alves, Natália Lopes; Guimarães, Ariane; Carneiro, Fernanda Melo Trends in the scientific production on aquatic microhabitats phytotelmata: a scientometric study Acta Scientiarum. Biological Sciences, vol. 40, 2018, -, pp. 2-9 Universidade Estadual de Maringá Brasil DOI: https://doi.org/10.4025/actascibiolsci.v40i1.40994 Available in: https://www.redalyc.org/articulo.oa?id=187158163050 How to cite Complete issue Scientific Information System Redalyc More information about this article Network of Scientific Journals from Latin America and the Caribbean, Spain and Journal's webpage in redalyc.org Portugal Project academic non-profit, developed under the open access initiative Acta Scientiarum http://periodicos.uem.br/ojs/acta ISSN on-line: 1807-863X Doi: 10.4025/actascibiolsci.v40i1.40994 ECOLOGY Trends in the scientific production on aquatic microhabitats phytotelmata: a scientometric study Ana Paula Teixeira1, Paulo Fernandes Roges Souza Silva2, João Paulo Francisco de Souza1, Natália Lopes Alves1, Ariane Guimarães1 and Fernanda Melo Carneiro3 1Departamento de Ciências Exatas e Tecnológicas, Universidade Estadual de Goiás, BR-153, 83105, 75132-903, Anápolis, Goiás, Brazil. 2Universidade do Estado de Mato Grosso, Nova Xavantina, Mato Grosso, Brazil. 3Universidade Estadual de Goiás, Goiânia, Goiás, Brazil. *Author for correspondence. E-mail: [email protected] ABSTRACT. We performed a scientometry to validate trends in the scientific production on phytotelmata and the importance of these microenvironments in the maintenance of biodiversity. We searched for articles in the Web of Science and looked at publications from 1987 to 2016. -
From Specimens to the Tree-Of-Life: Tackling Tropical Arthropod Diversity
FROM SPECIMENS TO THE TREE-OF-LIFE: TACKLING TROPICAL ARTHROPOD DIVERSITY DARREN YEO B.Sc. (Hons), NUS A THESIS SUBMITTED FOR THE DEGREE OF DOCTOR OF PHILOSOPHY DEPARTMENT OF BIOLOGICAL SCIENCES NATIONAL UNIVERSITY OF SINGAPORE AND DEPARTMENT OF LIFE SCIENCES IMPERIAL COLLEGE LONDON 2018 Supervisors: Professor Rudolf Meier, Main Supervisor Professor Alfried P. Vogler, Co-Supervisor Examiners: Assistant Professor Huang Danwei Dr. Thomas Bell Professor Dalton De Souza Amorim i Declaration I hereby declare that this thesis is my original work and it has been written by me in its entirety. I have duly acknowledged all the sources of information which have been used in the thesis. This thesis has also not been submitted for any degree in any university previously. _____________________________ Darren Yeo 03 August 2018 The copyright of this thesis rests with the author and is made available under a Creative Commons Attribution Non-Commercial No Derivatives licence. Researchers are free to copy, distribute or transmit the thesis on the condition that they attribute it, that they do not use it for commercial purposes and that they do not alter, transform or build upon it. For any reuse or redistribution, researchers must make clear to others the licence terms of this work ii Acknowledgements I am deeply grateful towards the following people, without whom this thesis would not have been possible: Prof. Rudolf Meier, who has had the central role in shaping my growth as a researcher, student and teacher. Thank you for always being supportive, conscientious and patient with me throughout my PhD studies. I am truly thankful to have a supervisor both passionate and well-versed in this field, who is able to spark and nurture my interest for entomology and molecular biology. -
Ecological Interactions Between Spiders and the Purple Pitcher Plant, Sarracenia Purpurea Marc Aaron Milne Old Dominion University
Old Dominion University ODU Digital Commons Biological Sciences Theses & Dissertations Biological Sciences Spring 2010 Ecological Interactions Between Spiders and the Purple Pitcher Plant, Sarracenia purpurea Marc Aaron Milne Old Dominion University Follow this and additional works at: https://digitalcommons.odu.edu/biology_etds Part of the Ecology and Evolutionary Biology Commons, Entomology Commons, and the Parasitology Commons Recommended Citation Milne, Marc A.. "Ecological Interactions Between Spiders and the Purple Pitcher Plant, Sarracenia purpurea" (2010). Doctor of Philosophy (PhD), dissertation, Biological Sciences, Old Dominion University, DOI: 10.25777/w46r-te09 https://digitalcommons.odu.edu/biology_etds/65 This Dissertation is brought to you for free and open access by the Biological Sciences at ODU Digital Commons. It has been accepted for inclusion in Biological Sciences Theses & Dissertations by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. ECOLOGICAL INTERACTIONS BETWEEN SPIDERS AND THE PURPLE PITCHER PLANT, SARRACENIA PURPUREA by Marc Aaron Milne B.S. May 2002, University of North Florida A Dissertation Submitted to the Faculty of Old Dominion University in Partial Fulfillment of the Requirement for the Degree of DOCTOR OF PHILOSOPHY ECOLOGICAL SCIENCES OLD DOMINION UNIVERSITY May 2010 Approved by: Vic^f Townsend, Jr. (Men| Kneeland Nesius (Member) ABSTRACT ECOLOGICAL INTERACTIONS BETWEEN SPIDERS AND THE PURPLE PITCHER PLANT, SARRACENIA PURPUREA Marc Aaron Milne Old Dominion University, 2010 Director: Dr. Deborah A. Waller Spiders and harvestmen are commonly captured by or reside upon the carnivorous purple pitcher plant, Sarracenia purpurea. Although spiders and harvestmen are often known to be prey of S. purpurea, other ecological interactions between these arthropods and the plant are poorly understood. -
Nematode Diversity of Phytotelmata of Nepenthes Spp. in Mount Hamiguitan Range Wildlife Sanctuary, Philippines
Ghent University Faculty of Sciences Department of Biology Academic Year 2011-2013 Nematode diversity of phytotelmata of Nepenthes spp. in Mount Hamiguitan Range Wildlife Sanctuary, Philippines JOESEPH SELLADO QUISADO Promoter: Prof. Dr. WIM BERT & Thesis submitted to obtain the degree of Dr. IRMA TANDINGAN DE LEY Master of Science in Nematology Nematode diversity of phytotelmata of Nepenthes spp. in Mount Hamiguitan Range Wildlife Sanctuary, Philippines JOESEPH SELLADO QUISADO Nematology Section, Department of Biology, Faculty of Sciences, Ghent University; K.L. Ledeganckstraat 35, 9000 Ghent, Belgium [email protected]/[email protected] Summary – Nematodes from phytotelmata of Nepenthes hamiguitanensis and N. peltata in Mt. Hamiguitan, Philippines included three new species of the genera: Molgolaimus Ditlevsen 1921, Dominicactinolaimus Jairajpuri and Ahmad 1992, Tripylella (Bütschli, 1873) Brzeski & Winiszewska-Ślipińska, 1993; two known: Tylocephalus auriculatus (Bütschli, 1873) Anderson, 1966, Pelodera strongyloides (Schneider, 1860) Schneider 1866; and three uncertain species of the genera: Paractinolaimus Meyl 1957, Plectus Bastian 1865, and Anaplectus De Coninck & Schuurmans Stekhoven 1933. Measurements and illustrations are provided. Molgolaimus sp. nov. is characterized by the absence of pre-cloacal supplements, shape of the spicule with lamina widened distally, conical tail with swollen tip and without digitate prolongation, and sexual dimorphism in the shape of the cardia (elongated in male and more round in females). Moreover, a comprehensive key for the genus Molgolaimus is presented. Dominicactinolaimus sp. nov. is characterized by short body length, long tail (c = 6.6-7.6) and 6-7 pre-cloacal supplements. The generic position of Dominicatinolaimus is reaffirmed and the synonymy with Trachypleurosum or Trachactinolaimus is rejected. -
Universities of Leeds, Sheffield and York
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by White Rose Research Online promoting access to White Rose research papers Universities of Leeds, Sheffield and York http://eprints.whiterose.ac.uk/ This is the author’s pre-print version of an article published in Advances in Ecological Research White Rose Research Online URL for this paper: http://eprints.whiterose.ac.uk/id/eprint/76090 Published article: Hagen, M, Kissling, WD, Rasmussen, C, Carstensen, DW, Dupont, YL, Kaiser- Bunbury, CN, O'Gorman, EJ, Olesen, JM, De Aguiar, MAM, Brown, LE, Alves- Dos-Santos, I, Guimarães, PR, Maia, KP, Marquitti, FMD, Vidal, MM, Edwards, FK, Genini, J, Jenkins, GB, Trøjelsgaard, K, Woodward, G, Jordano, P, Ledger, ME, Mclaughlin, T, Morellato, LPC and Tylianakis, JM (2012) Biodiversity, Species Interactions and Ecological Networks in a Fragmented World. Advances in Ecological Research, 46. 89 - 120. ISSN 0065-2504 http://dx.doi.org/10.1016/B978-0-12-396992-7.00002... White Rose Research Online [email protected] 1 Biodiversity, species interactions and ecological networks 2 in a fragmented world 3 4 MELANIE HAGEN1, W. DANIEL KISSLING1, CLAUS RASMUSSEN1, MARCUS A. M. 5 DE AGUIAR2, LEE BROWN3, DANIEL W. CARSTENSEN1, ISABEL ALVES-DOS- 6 SANTOS4, YOKO L. DUPONT1, FRANCOIS K. EDWARDS5, JULIETA GENINI6, 7 PAULO R. GUIMARÃES JR.4, GARETH B. JENKINS7, PEDRO JORDANO8, 8 CHRISTOPHER N. KAISER-BUNBURY1, MARK LEDGER9, KATE P. MAIA4, FLAVIA 9 M. DARCIE MARQUITTI4, ÓRLA MCLAUGHLIN10,11, L. PATRICIA C. MORELLATO6, 10 EOIN J. O’GORMAN7, KRISTIAN TRØJELSGAARD1, JASON M. TYLIANAKIS12, 11 MARIANA MORAIS VIDAL4, GUY WOODWARD7 AND JENS M. -
Nutrient Availability Affects Flowering Rate but Has Limited Influence on Morphology of the Hooded Pitcher Plant, Sarracenia Minor
UNF Digital Commons UNF Graduate Theses and Dissertations Student Scholarship 2013 Nutrient Availability Affects Flowering Rate but has Limited Influence on Morphology of the Hooded Pitcher Plant, Sarracenia minor. Justin M. Lemmons University of North Florida Suggested Citation Lemmons, Justin M., "Nutrient Availability Affects Flowering Rate but has Limited Influence on Morphology of the Hooded Pitcher Plant, Sarracenia minor." (2013). UNF Graduate Theses and Dissertations. 475. https://digitalcommons.unf.edu/etd/475 This Master's Thesis is brought to you for free and open access by the Student Scholarship at UNF Digital Commons. It has been accepted for inclusion in UNF Graduate Theses and Dissertations by an authorized administrator of UNF Digital Commons. For more information, please contact Digital Projects. © 2013 All Rights Reserved NUTRIENT AVAILABILITY AFFECTS FLOWERING RATE BUT HAS LIMITED INFLUENCE ON MORPHOLOGY OF THE HOODED PITCHER PLANT, SARRACENIA MINOR By Justin Marc Lemmons A thesis submitted to the Department of Biology in partial fulfillment of the requirements for the degree of Master of Science in Biology UNIVERSITY OF NORTH FLORIDA COLLEGE OF ARTS AND SCIENCES December, 2013 Unpublished work © Justin Marc Lemmons CERTIFICATE OF APPROVAL The thesis “Nutrient Availability Affects Flowering Rate but has Limited Influence on Morphology of the Hooded Pitcher Plant, Sarracenia minor” submitted by Justin Marc Lemmons. Approved by the thesis committee: Date _____________________________ ___________________ Anthony M. Rossi, Ph.D. Committee Chair Person ______________________________ ____________________ Daniel C. Moon, Ph.D. ______________________________ _____________________ Dale A. Casamatta, Ph.D. Accepted for the Department: _______________________________ _______________________ Daniel C. Moon, Ph.D. Chairperson Accepted for the College: ________________________________ ________________________ Barbara A. -
Diverse Microbial Communities Hosted by the Model Carnivorous Pitcher Plant Sarracenia Purpurea: Analysis of Both Bacterial
Diverse microbial communities hosted by the model carnivorous pitcher plant Sarracenia purpurea: analysis of both bacterial and eukaryotic composition across distinct host plant populations Jacob J. Grothjan1 and Erica B. Young1,2 1 Department of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, United States of America 2 School of Freshwater Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, United States of America ABSTRACT Background. The pitcher plant Sarracenia purpurea supplements nutrient acquisition through carnivory, capturing insect prey which are digested by a food web community of eukaryotes and bacteria. While the food web invertebrates are well studied, and some recent studies have characterized bacteria, detailed genetic analysis of eukaryotic diversity is lacking. This study aimed to compare eukaryotic and bacterial composition and diversity of pitcher communities within and between populations of host plants in nearby but distinct wetland habitats, and to characterize microbial functions across populations and in comparison with another freshwater community. Methods. Pitcher fluid was sampled from the two wetlands, Cedarburg and Sapa Bogs, community DNA was extracted, and 16S and 18S rRNA amplicons were sequenced and data processed for community-level comparisons. Results and Conclusions. Bacterial diversity in the small pitcher volume rivaled that of larger aquatic communities. Between pitcher plant populations, several bacterial families (Kiloniellaceae, Acetobacteraceae, Xanthobacteraceae, Sanguibacteraceae, Oligoflexaceae, Nitrosomonadaceae, Chromatiaceae, Saprospiraceae) were significantly Submitted 22 October 2018 Accepted 4 January 2019 higher in one population. However, although predicted pitcher bacterial functions Published 18 February 2019 were distinct from other freshwater communities, especially for some amino acid Corresponding author metabolism, functions were similar across all the pitchers in the two populations. -
Darlingtonia Californica Phytotelma Organisms
DARLINGTONIA CALIFORNICA PHYTOTELMA ORGANISMS: SPATIAL RELATIONS WITHIN THE METACOMMUNITY By Stefani Brandt A Thesis Presented to The Faculty of Humboldt State University In Partial Fulfillment of the Requirements for the Degree Master of Science in Biology Committee Membership Dr. Michael Camann, Committee Chair Dr. Erik Jules, Committee Member Dr. Michael Mesler, Committee Member Dr. Edward Metz, Committee Member Dr. Erik Jules, Program Graduate Coordinator December 2017 ABSTRACT DARLINGTONIA CALIFORNICA PHYTOTELMA ORGANISMS: SPATIAL RELATIONS WITHIN THE METACOMMUNITY Stefani Brandt The California pitcher plant, Darlingtonia californica, provides a unique setting to research community ecology because it harbors small ponds of water, or phytotelmata, in its modified leaves. Each phytotelma hosts a unique community of various invertebrates who live among carcasses of drowned plant prey. These pitchers and their inquiline communities are relatively small yet abundant in the wild, resulting in an ideal natural setup for community composition comparisons. There have been no previous studies that research D. californica inquiline communities across multiple geographic regions concurrently. This study sought to survey phytotelma communities throughout the range of D. californica at three spatial scales- regions (the largest geographic scale), fens (a more localized scale), and pitchers (the smallest scale). Community composition metrics were calculated to compare richness, evenness, diversity, and abundance among the four regions. Seven taxa and 14,358 individuals were recorded in the 93 pitchers sampled in National Forests throughout southern Oregon and northern California. Non-metric multidimensional scaling ordination showed slight groupings of samples within regions. Community composition of pitchers was more similar within regions than between regions and within fens than between fens. -
Estructura Poblacional De
BOLETÍN CIENTÍFICO bol.cient.mus.hist.nat. 22 (2), julio-diciembre, 2018. 107-131. ISSN: 0123-3068 (Impreso) ISSN: 2462-8190 (En línea) CENTRO DE MUSEOS MUSEO DE HISTORIA NATURAL ESTRUCTURA POBLACIONAL DE MECISTOGASTER ORNATA RAMBUR 1842 (ODONATA: PSEUDOSTIGMATIDAE) EN DOS FRAGMENTOS DE BOSQUE SECO TROPICAL EN EL * DEPARTAMENTO DEL ATLÁNTICO, COLOMBIA Brayan Díaz Flórez1, María Pozo García1, Mariano Altamiranda-Saavedra2 & Neis Martínez- Hernández3 Resumen Objetivo: Se evaluó la variación de la estructura poblacional de M. ornata en dos fragmentos (La Montaña y Sarmiento) de bosque seco tropical en el departamento del Atlántico, Colombia. Alcance: Determinar las variaciones espaciales y temporales de la abundancia de M. ornata y su relación con las variables ambientales; así como la disponibilidad de fitotelmas y la estructura de la vegetación. Metodología: Se realizaron 26 muestreos (13 por fragmento) cada 8 días entre las 8:00 hasta las 17:00 horas (9 horas/hombre/fragmento). Por fragmento se estableció un área de 600 m de largo por 30 m de ancho, donde se marcaron 10 puntos distanciados 50 m uno del otro y de esta forma se obtuvieron 10 tramos con igual longitud. Los odonatos fueron capturados con redes entomológicas, usando el método de marcaje y recaptura. Por otro lado, en cada tramo se midió la temperatura ambiente, humedad relativa y la intensidad lumínica; así como el número de fitotelmas y algunas de sus características (altura, densidad, volumen) y la estructura de la vegetación (densidad de árboles, cobertura vegetal, área basal y altura promedio). Principales resultados: En La Montaña fueron capturados y liberados 90 individuos (35 ♂, 55 ♀), de los cuales 40 fueron recapturados (15 ♂, 25 ♀) una o más veces. -
Soil Surface Applications of Chemicals for the Control of Neonate Diaprepes Abbreviatus (Coleoptera: Curculionidae) and Their Effect on Ant Predators
McCoy et al.: IPM of Diaprepes abbreviatus on Citrus 327 SOIL SURFACE APPLICATIONS OF CHEMICALS FOR THE CONTROL OF NEONATE DIAPREPES ABBREVIATUS (COLEOPTERA: CURCULIONIDAE) AND THEIR EFFECT ON ANT PREDATORS CLAYTON W. MCCOY, ROBIN J. STUART, IAN JACKSON, JERRY FOJTIK AND ANGELIQUE HOYTE Citrus Research and Education Center, University of Florida, IFAS 700 Experiment Station Road, Lake Alfred, FL 33850 ABSTRACT The root weevil, Diaprepes abbreviatus, as a larva, inflicts feeding injury to the bark of all root parts of a citrus tree, thereby impairing root function and supplying infection courts for soil-borne root rot diseases. Ideally, larvae should be controlled at the soil surface before they reach the root zone. In screenhouse and field experiments conducted in central Florida from 1996-99, the synthetic pyrethroid, bifenthrin, at 0.54 g/m2 (0.554 kg ai/ha) and RPA107382, an analog of fipronil, at 0.156 and 0.312 ml/m2 (0.242-0.466 kg ai/ha), were applied uniformly to the soil surface beneath the tree to form a chemical barrier against neonates of D. abbre- viatus. By comparison to the control, larval populations were reduced by 80-100% within one week and these reductions persisted for 4-8 weeks. In an open screenhouse, bifenthrin gave excellent root protection of container-grown trees during a 22 week period when neonates were added to containers weekly for 12 weeks. RPA107382 was highly effective for about 2 weeks but lacked residual effect. The accumulation of leaf litter beneath the tree impaired coverage of the soil by bifenthrin resulting in reduced control. -
Amphibia; Anura; Dendrobatidae and Aromobatidae)
Universidade de São Paulo Programa de Pós-Graduação em Zoologia Evolution of Larval Characters in Dendrobatoidea Cope, 1865 (Amphibia; Anura; Dendrobatidae and Aromobatidae) Pedro Henrique dos Santos Dias Tese apresentada ao Programa de Pós-Graduação em Zoologia do Instituto de Biociências da Universidade de São Paulo como parte dos requisitos necessários à obtenção do Título de Doutor em Ciências Biológicas, na área Zoologia Orientador: Dr. Taran Grant São Paulo 2018 RESUMO Girinos representam um elemento chave na história evolutiva e na diversificação dos anuros. Através de um ciclo de vida bifásico, os anuros conseguem aproveitar os recursos disponíveis tanto no ambiente terrestre como no aquático. Vários estudos demonstraram que a morfologia larvar pode representar uma importante fonte de evidências para estudos evolutivos. No entanto, girinos frequentemente são ignorados e pouco se sabe sobre sua anatomia e biologia. Um exemplo dessa problemática é a superfamília Dendrobatoidea, para a qual quase não há informações sobre seus girinos. O presente estudo visa contribuir para o preenchimento dessa lacuna. Eu realizei uma análise cladística da superfamília Dendrobatoidae, tendo como foco caracteres larvais. O dataset final também incluiu caracteres de adulto e sequências de DNA. A matriz final foi composta por 621 terminais e mais de 500 caracteres fenotípicos, dos quais 392 foram individualizados de sistemas larvais como condrocrânio, musculatura craniana e cavidade buccopharingeal. Em minha hipótese ótima, eu recuperei Dendrobatoidea bem como todas suas subfamílias e gêneros monofiléticos. Caracteres larvais otimizaram como sinapomorfias em diferentes níveis. Mediante a topologia e a distribuição dos caracteres, eu discuto a evolução de uma série de modos de vida e morfologias, como a oofagia, o endotrofismo e a carnivoria em Dendrobatoidea.