Toxinology in Colombia: Contributions of Ophidism/Scorpionism Program and Other Research Groups
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Modeling and Partitioning the Nucleotide Evolutionary Process for Phylogenetic and Comparative Genomic Inference
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2007 Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference Todd Castoe University of Central Florida Part of the Biology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Doctoral Dissertation (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Castoe, Todd, "Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference" (2007). Electronic Theses and Dissertations, 2004-2019. 3111. https://stars.library.ucf.edu/etd/3111 MODELING AND PARTITIONING THE NUCLEOTIDE EVOLUTIONARY PROCESS FOR PHYLOGENETIC AND COMPARATIVE GENOMIC INFERENCE by TODD A. CASTOE B.S. SUNY – College of Environmental Science and Forestry, 1999 M.S. The University of Texas at Arlington, 2001 A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biomolecular Sciences in the Burnett College of Biomedical Sciences at the University of Central Florida Orlando, Florida Spring Term 2007 Major Professor: Christopher L. Parkinson © 2007 Todd A. Castoe ii ABSTRACT The transformation of genomic data into functionally relevant information about the composition of biological systems hinges critically on the field of computational genome biology, at the core of which lies comparative genomics. The aim of comparative genomics is to extract meaningful functional information from the differences and similarities observed across genomes of different organisms. -
Phylogenetic Diversity, Habitat Loss and Conservation in South
Diversity and Distributions, (Diversity Distrib.) (2014) 20, 1108–1119 BIODIVERSITY Phylogenetic diversity, habitat loss and RESEARCH conservation in South American pitvipers (Crotalinae: Bothrops and Bothrocophias) Jessica Fenker1, Leonardo G. Tedeschi1, Robert Alexander Pyron2 and Cristiano de C. Nogueira1*,† 1Departamento de Zoologia, Universidade de ABSTRACT Brasılia, 70910-9004 Brasılia, Distrito Aim To analyze impacts of habitat loss on evolutionary diversity and to test Federal, Brazil, 2Department of Biological widely used biodiversity metrics as surrogates for phylogenetic diversity, we Sciences, The George Washington University, 2023 G. St. NW, Washington, DC 20052, study spatial and taxonomic patterns of phylogenetic diversity in a wide-rang- USA ing endemic Neotropical snake lineage. Location South America and the Antilles. Methods We updated distribution maps for 41 taxa, using species distribution A Journal of Conservation Biogeography models and a revised presence-records database. We estimated evolutionary dis- tinctiveness (ED) for each taxon using recent molecular and morphological phylogenies and weighted these values with two measures of extinction risk: percentages of habitat loss and IUCN threat status. We mapped phylogenetic diversity and richness levels and compared phylogenetic distances in pitviper subsets selected via endemism, richness, threat, habitat loss, biome type and the presence in biodiversity hotspots to values obtained in randomized assemblages. Results Evolutionary distinctiveness differed according to the phylogeny used, and conservation assessment ranks varied according to the chosen proxy of extinction risk. Two of the three main areas of high phylogenetic diversity were coincident with areas of high species richness. A third area was identified only by one phylogeny and was not a richness hotspot. Faunal assemblages identified by level of endemism, habitat loss, biome type or the presence in biodiversity hotspots captured phylogenetic diversity levels no better than random assem- blages. -
Effects of Brazilian Scorpion Venoms on the Central Nervous System
Nencioni et al. Journal of Venomous Animals and Toxins including Tropical Diseases (2018) 24:3 DOI 10.1186/s40409-018-0139-x REVIEW Open Access Effects of Brazilian scorpion venoms on the central nervous system Ana Leonor Abrahão Nencioni1* , Emidio Beraldo Neto1,2, Lucas Alves de Freitas1,2 and Valquiria Abrão Coronado Dorce1 Abstract In Brazil, the scorpion species responsible for most severe incidents belong to the Tityus genus and, among this group, T. serrulatus, T. bahiensis, T. stigmurus and T. obscurus are the most dangerous ones. Other species such as T. metuendus, T. silvestres, T. brazilae, T. confluens, T. costatus, T. fasciolatus and T. neglectus are also found in the country, but the incidence and severity of accidents caused by them are lower. The main effects caused by scorpion venoms – such as myocardial damage, cardiac arrhythmias, pulmonary edema and shock – are mainly due to the release of mediators from the autonomic nervous system. On the other hand, some evidence show the participation of the central nervous system and inflammatory response in the process. The participation of the central nervous system in envenoming has always been questioned. Some authors claim that the central effects would be a consequence of peripheral stimulation and would be the result, not the cause, of the envenoming process. Because, they say, at least in adult individuals, the venom would be unable to cross the blood-brain barrier. In contrast, there is some evidence showing the direct participation of the central nervous system in the envenoming process. This review summarizes the major findings on the effects of Brazilian scorpion venoms on the central nervous system, both clinically and experimentally. -
A Prey Item Not Previously Recorded for Bothrops Asper: a Case of Ophiophagy Involving Two Sympatric Pit Viper Species
HERPETOTROPICOS Vol. 5(2):107-109 ISSN 1690-7930 (Printed) ISSN 1856-9285 (Online) J.S. MENDOZA ROLDAN Y M. FERNÁNDEZ LUCERO - OPHIOPHAGY IN SYMPATPrintedRIC inPIT Venezuela. VIPE RSAll rights reserved107 Copyright © 2011 Univ. Los Andes A PREY ITEM NOT PREVIOUSLY RECORDED FOR BOTHROPS ASPER: A CASE OF OPHIOPHAGY INVOLVING TWO SYMPATRIC PIT VIPER SPECIES JUAN SALVADOR MENDOZA ROLDAN1,2 AND MATEO FERNÁNDEZ LUCERO1 1 Museo de Historia Natural, Colección de Herpetología, Universidad de los Andes, Departamento de Ciencias Biológicas, Cra. 1A No. 18A-10, Edificio J, Piso 4, Bogotá, Colombia. Abstract: We document the first record of viperid predation for Bothrops asper. The feeding event involved a neonate of this species and a neonate of Porthidium lansbergii, the prey item. We consider neonate viper ophiophagy in B. asper a density-dependent response, as has been shown in cannibalistic events. High neonate abundance during common parturition dates makes encounters of both species likely to occur. Although we consider this feeding behavior as opportunistic, its true frequency in nature is unknown. Key Words: Serpentes, Viperidae, ecology, diet, feeding habits, Porthidium lansbergii, Colombia. Resumen: J.S. Mendoza Roldan y M. Fernández Lucero. “Una presa de Bothrops asper no reportada previamente: un caso de ofiofagia que involucra dos especies simpátricas de víboras”. Documentamos el primer registro de depredación de vipéridos por Bothrops asper. El evento de alimentación involucró un neonato de esta especie y un neonato de Porthidium lansbergii, la presa. Consideramos que la ofiofagia en B. asper es una respuesta denso-dependiente, como se ha descrito en eventos de canibalismo. Abundancias elevadas de neonatos durante las fechas de nacimientos comunes para ambas especies, facilita el encuentro entre ellas. -
Comparison of Antivenom Effects Between Pediatric and Adult Patients Presented to Emergency Department with Scorpion Stings
Available online at www.medicinescience.org Medicine Science International ORIGINAL ARTICLE Medical Journal Medicine Science 2020;9(1):109-13 Comparison of antivenom effects between pediatric and adult patients presented to emergency department with scorpion stings Ertugrul Altinbilek1, Kaan Yusufoglu1, Abdullah Algin2, Sahin Colak3 1 University of Health Sciences Sisli Hamidiye Etfal Training and Research Hospital, Department of Emergency Medicine, Istanbul, Turkey 2University of Health Sciences Umraniye Training and Research Hospital, Department of Emergency Medicine, Istanbul, Turkey 3University of Health Sciences Haydarpasa Numune Training and Research Hospital, Department of Emergency Medicine, Istanbul, Turkey Received 15 August 2019; Accepted 23 September 2019 Available online 24.02.2020 with doi: 10.5455/medscience.2019.08.9148 Abstract The aim of this study was to compare the use of antivenom, and admission to ICU, scorpinism between adult and pediatric patients. This study included 99 patients who were admitted to the emergency department with scorpion sting within 1 year. Patients’ demographics including age and gender, and clinical findings such as ionized Ca values, body region of sting contact and complications were recorded from the patient files and hospital records. In addition, regarding management of patients with scorpionism the use of antivenoms, admission to intensive care unit and complications developed by the patients were also recorded. Patients were divided into two groups according to age as the pediatric group including patients aged ≤ 18 years (Group 1) old and the adult group consisting of patients aged> 18 years old (Group 2). Antivenom administration was performed in 12 patients (12.2%). Antivenom was administered in 38% (n=8) of the patients in Group 1 and 5.13% (n=4) of the patients in Group 2. -
Capacidades De Gestión De Conocimiento Y Formación
Capacidades de gestión de conocimiento y formación posgraduada para la salud en las universidades públicas de Centroamérica y República Dominicana Edmundo Torres Godoy noviembre de 2017 Capacidades de gestión de conocimiento y formación posgraduada para la salud en las universidades públicas de Centroamérica y República Dominicana © Edmundo Torres Godoy, 2017 © Organización Panamericana de la Salud, 2017 Este obra está bajo una licencia de Creative Commons Reconocimiento-NoComercial-CompartirIgual 4.0 Internacional. Usted es libre para: Compartir — copiar y redistribuir el material en cualQuier medio o formato Adaptar — remezclar, transformar y crear a partir del material Bajo los siguientes términos: Atribución — Usted debe darle crédito a esta obra de manera adecuada, proporcionando un enlace a la licencia, e indicando si se han realizado cambios. Puede hacerlo en cualQuier forma razonable, pero no de forma tal que sugiera que usted o su uso tienen el apoyo del licenciante. Forma sugerida de otorgar crédito por esta obra: Torres Godoy, E. (2017). Capacidades de gestión de conocimiento y formación posgraduada para la salud en las universidades públicas de Centroamérica y República Dominicana. Organización Panamericana de la Salud. No comercial — Usted no puede hacer uso del material con fines comerciales. Compartir igual — Si usted mezcla, transforma o crea nuevo material a partir de esta obra, usted podrá distribuir su contribución siempre que utilice la misma licencia Que la obra original. No hay restricciones adicionales — Usted no puede aplicar términos legales ni medidas tecnológicas Que restrinjan legalmente a otros hacer cualQuier uso permitido por la licencia. El licenciante no puede revocar estas libertades en tanto usted siga los términos de la licencia Contenido Introducción ....................................................................................................................................... -
A Global Accounting of Medically Significant Scorpions
Toxicon 151 (2018) 137–155 Contents lists available at ScienceDirect Toxicon journal homepage: www.elsevier.com/locate/toxicon A global accounting of medically significant scorpions: Epidemiology, major toxins, and comparative resources in harmless counterparts T ∗ Micaiah J. Ward , Schyler A. Ellsworth1, Gunnar S. Nystrom1 Department of Biological Science, Florida State University, Tallahassee, FL 32306, USA ARTICLE INFO ABSTRACT Keywords: Scorpions are an ancient and diverse venomous lineage, with over 2200 currently recognized species. Only a Scorpion small fraction of scorpion species are considered harmful to humans, but the often life-threatening symptoms Venom caused by a single sting are significant enough to recognize scorpionism as a global health problem. The con- Scorpionism tinued discovery and classification of new species has led to a steady increase in the number of both harmful and Scorpion envenomation harmless scorpion species. The purpose of this review is to update the global record of medically significant Scorpion distribution scorpion species, assigning each to a recognized sting class based on reported symptoms, and provide the major toxin classes identified in their venoms. We also aim to shed light on the harmless species that, although not a threat to human health, should still be considered medically relevant for their potential in therapeutic devel- opment. Included in our review is discussion of the many contributing factors that may cause error in epide- miological estimations and in the determination of medically significant scorpion species, and we provide suggestions for future scorpion research that will aid in overcoming these errors. 1. Introduction toxins (Possani et al., 1999; de la Vega and Possani, 2004; de la Vega et al., 2010; Quintero-Hernández et al., 2013). -
Envenomation Caused by the Bite of the Snake Bothriechis Schlegelii. Report of Two Cases in Colombia
Case Reports 2017; 3(1) https://revistas.unal.edu.co/index.php/care/article/view/58625 ENVENOMATION CAUSED BY THE BITE OF THE SNAKE BOTHRIECHIS SCHLEGELII. REPORT OF TWO CASES IN COLOMBIA Palabras clave: Bothriechis schlegelii; Mordeduras de serpientes; Coagulación sanguínea; Colombia. Keywords: Bothriechis schlegelii; Snake bites; Blood coagulation; Colombia. Mario Galofre-Ruiz, MD, MSc Tox Centro de Información de Seguridad sobre Productos Químicos CISPROQUIM Consejo Colombiano de Seguridad Bogotá D.C. – Colombia Corresponding author [email protected] Phone number.: (057)3157261026 CASE REPORTS ABSTRACT brown and black), helps it mimic its surround- ings. It has prehensile tail, and from two to four The bite by snakes of the Bothriechis genus is small superciliar scales, in the way of “eye- common in certain areas of Colombia such as lashes”. It feeds on baby birds, lizards, frogs the Coffee-growing Region. Due to their arbo- and rodents, inhabits tropical forests and corn real habits and defensiveness, these snakes and coffee crops, at altitudes ranging from 0 usually bite farmers in their upper limbs and to 2600 m; the viper reaches the highest alti- face. In Colombia, the incidence of accidents tude in Colombia (2,3). caused by these snakes has not been accu- In the regions in which it inhabits, it is also rately estimated yet because of deficiencies in known as cabeza de candado, granadilla, ví- recording this type of cases, as well as of the bora de tierra fría, víbora de pestañas, ya- ignorance on this reptile by health personnel ruma, veinticuatro, guacamaya, víbora rayo, working in its area of influence. -
A New Species of Ananteris (Scorpiones: Buthidae) from Panama
A new species of Ananteris (Scorpiones: Buthidae) from Panama Roberto J. Miranda & Luis F. de Armas February 2020 — No. 297 Euscorpius Occasional Publications in Scorpiology EDITOR: Victor Fet, Marshall University, ‘[email protected]’ ASSOCIATE EDITOR: Michael E. Soleglad, ‘[email protected]’ Euscorpius is the first research publication completely devoted to scorpions (Arachnida: Scorpiones). Euscorpius takes advantage of the rapidly evolving medium of quick online publication, at the same time maintaining high research standards for the burgeoning field of scorpion science (scorpiology).Euscorpius is an expedient and viable medium for the publication of serious papers in scorpiology, including (but not limited to): systematics, evolution, ecology, biogeography, and general biology of scorpions. Review papers, descriptions of new taxa, faunistic surveys, lists of museum collections, and book reviews are welcome. Derivatio Nominis The name Euscorpius Thorell, 1876 refers to the most common genus of scorpions in the Mediterranean region and southern Europe (family Euscorpiidae). Euscorpius is located at: https://mds.marshall.edu/euscorpius/ Archive of issues 1-270 see also at: http://www.science.marshall.edu/fet/Euscorpius (Marshall University, Huntington, West Virginia 25755-2510, USA) ICZN COMPLIANCE OF ELECTRONIC PUBLICATIONS: Electronic (“e-only”) publications are fully compliant with ICZN (International Code of Zoological Nomenclature) (i.e. for the purposes of new names and new nomenclatural acts) when properly archived and registered. All Euscorpius issues starting from No. 156 (2013) are archived in two electronic archives: • Biotaxa, http://biotaxa.org/Euscorpius (ICZN-approved and ZooBank-enabled) • Marshall Digital Scholar, http://mds.marshall.edu/euscorpius/. (This website also archives all Euscorpius issues previously published on CD-ROMs.) Between 2000 and 2013, ICZN did not accept online texts as “published work” (Article 9.8). -
Porthidium Lansbergii Rozei) Snake´S Venom Causing Human Accidents in Eastern Venezuela Investigación Clínica, Vol
Investigación Clínica ISSN: 0535-5133 Universidad del Zulia Girón, María E.; Ramos, María I.; Cedeño, Luisneidys; Carrasquel, Axl; Sánchez, Elda E.; Navarrete, Luis F.; Rodríguez-Acosta, Alexis Exploring the biochemical, haemostatic and toxinological aspects of mapanare dry-tail (Porthidium lansbergii rozei) snake´s venom causing human accidents in Eastern Venezuela Investigación Clínica, vol. 59, no. 3, 2018, July-September, pp. 260-277 Universidad del Zulia DOI: https://doi.org/10.22209/IC.v59n3a06 Available in: https://www.redalyc.org/articulo.oa?id=372960219007 How to cite Complete issue Scientific Information System Redalyc More information about this article Network of Scientific Journals from Latin America and the Caribbean, Spain and Journal's webpage in redalyc.org Portugal Project academic non-profit, developed under the open access initiative Invest Clin 59(3): 260 - 277, 2018 https://doi.org/10.22209/IC.v59n3a06 Exploring the biochemical, haemostatic and toxinological aspects of mapanare dry-tail (Porthidium lansbergii rozei) snake´s venom causing human accidents in Eastern Venezuela María E. Girón1, María I. Ramos1, Luisneidys Cedeño1, Axl Carrasquel1, Elda E. Sánchez2, Luis F. Navarrete1 and Alexis Rodríguez-Acosta1 1Laboratorio de Inmunoquímica y Ultraestructura, Instituto Anatómico “José Izquierdo”, Facultad de Medicina, Universidad Central de Venezuela, Caracas, Venezuela. 2National Natural Toxins Research Center (NTRC), Texas A&M University-Kingsville, MSC 158, Kingsville, TX, USA. Key words: Porthidium lansbergii rozei; fibrinolysis; haemorrhages; lethality; venom. Abstract. Porthidium lansbergii rozei (P.l.rozei) is a snake species belonging to the Venezuelan ophidian-fauna causing relatively frequent human accidents. This study has been developed to enrich the medical information about this snake´s accident, which is often handled with difficulties due to the ignorance about its toxic activities. -
Reptiles Del Bosque Seco Estacional En El Caribe
ACTA BIOLÓGICA COLOMBIANA http://www.revistas.unal.edu.co/index.php/actabiol SEDE BOGOTÁ FACULTAD DE CIENCIAS ARTÍCULODEPARTAMENTO DE DE INVESTIGACIÓN/RESEARCH BIOLOGÍA ARTICLE REPTILES DEL BOSQUE SECO ESTACIONAL EN EL CARIBE COLOMBIANO: DISTRIBUCIÓN DE LOS HÁBITATS Y DEL RECURSO ALIMENTARIO Reptiles from the Seasonal Dry Forest the Caribbean Region: Distribution of Habitat and use of Food Resource Luis Eduardo ROJAS MURCIA1, Juan E. CARVAJAL COGOLLO1, Javier Alejandro CABREJO BELLO1. 1 Grupo Biología de la Conservación, Laboratorio Museo de Historia Natural Luis Gonzalo Andrade. Universidad Pedagógica y Tecnológica de Colombia, Av. Central del Norte. Tunja, Colombia. 2 Grupo Biodiversidad y Conservación, Línea Reptiles, Instituto de Ciencias Naturales, Universidad Nacional de Colombia. Bogotá, D.C., Colombia. For correspondence. [email protected] Received: 4th March 2015, Returned for revision: 18th April 2015, Accepted: 30th November 2015. Associate Editor: Martha Ramírez Pinilla. Citation / Citar este artículo como: Rojas Murcia LE, Carvajal Cogollo JE, Cabrejo Bello JA. Reptiles del bosque seco estacional en el Caribe Colombiano: distribución de los hábitats y del recurso alimentario. Acta biol. Colomb. 2016;21(2):365-377. doi: http://dx.doi.org/10.15446/abc.v21n2.49393 RESUMEN Con el fin de caracterizar la distribución horizontal (repartición de los hábitats) y la utilización del recurso alimentario (tipo y tamaño de las presas) del ensamblaje de reptiles del bosque seco estacional al norte de la región Caribe de Colombia, en el departamento del Cesar, se realizaron cinco salidas de campo con una duración de doce días cada una. Los muestreos se realizaron en jornadas diurnas y nocturnas, en un diseño de transectos replicados a lo largo de diferentes hábitats que incluyeron: pastizales, bordes e interiores de bosque. -
Snake Venomics of Bothrops Punctatus, a Semi-Arboreal Pitviper Species from Antioquia, Colombia
Snake venomics of Bothrops punctatus, a semi-arboreal pitviper species from Antioquia, Colombia Maritza Fernandez´ Culma1, Jaime Andres´ Pereanez˜ 1,2, Vitelbina Nu´ nez˜ Rangel1,3 and Bruno Lomonte4 1 Programa de Ofidismo/Escorpionismo, Universidad de Antioquia UdeA, Medell´ın, Colombia 2 Facultad de Qu´ımica Farmaceutica,´ Universidad de Antioquia UdeA, Medell´ın, Colombia 3 Escuela de Microbiolog´ıa, Universidad de Antioquia UdeA, Medell´ın, Colombia 4 Instituto Clodomiro Picado, Facultad de Microbiolog´ıa, Universidad de Costa Rica, San Jose,´ Costa Rica ABSTRACT Bothrops punctatus is an endangered, semi-arboreal pitviper species distributed in Panama,´ Colombia, and Ecuador, whose venom is poorly characterized. In the present work, the protein composition of this venom was profiled using the ‘snake venomics’ analytical strategy. Decomplexation of the crude venom by RP-HPLC and SDS-PAGE, followed by tandem mass spectrometry of tryptic digests, showed that it consists of proteins assigned to at least nine snake toxin families. Metalloproteinases are predominant in this secretion (41.5% of the total proteins), followed by C-type lectin/lectin-like proteins (16.7%), bradykinin-potentiating peptides (10.7%), phos- pholipases A2 (9.3%), serine proteinases (5.4%), disintegrins (3.8%), L-amino acid oxidases (3.1%), vascular endothelial growth factors (1.7%), and cysteine- rich secretory proteins (1.2%). Altogether, 6.6% of the proteins were not identified. In vitro, the venom exhibited proteolytic, phospholipase A2, and L-amino acid oxi- dase activities, as well as angiotensin-converting enzyme (ACE)-inhibitory activity, in agreement with the obtained proteomic profile. Cytotoxic activity on murine C2C12 myoblasts was negative, suggesting that the majority of venom phospholipases A2 Submitted 11 December 2013 likely belong to the acidic type, which often lack major toxic eVects.