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New Insight Into the Phylogeographic Pattern Of
New insight into the phylogeographic pattern of Liriodendron chinense (Magnoliaceae) revealed by chloroplast DNA: east–west lineage split and genetic mixture within western subtropical China Aihong Yang, Yongda Zhong, Shujuan Liu, Lipan Liu, Tengyun Liu, Yanqiang Li and Faxin Yu The Key Laboratory of Horticultural Plant Genetic and Improvement of Jiangxi, Institute of Biological Resources, Jiangxi Academy of Sciences, Nanchang, Jiangxi, China ABSTRACT Background: Subtropical China is a global center of biodiversity and one of the most important refugia worldwide. Mountains play an important role in conserving the genetic resources of species. Liriodendron chinense is a Tertiary relict tree largely endemic to subtropical China. In this study, we aimed to achieve a better understanding of the phylogeographical pattern of L. chinense andtoexploretheroleofmountainsintheconservationofL. chinense genetic resources. Methods: Three chloroplast regions (psbJ-petA, rpl32-ndhF, and trnK5’-matK) were sequenced in 40 populations of L. chinense for phylogeographical analyses. Relationships among chloroplast DNA (cpDNA) haplotypes were determined using median-joining networks, and genetic structure was examined by spatial analysis of molecular variance (SAMOVA). The ancestral area of the species was reconstructed using the Bayesian binary Markov Chain Monte Carlo (BBM) method according to its geographic distribution and a maximum parsimony (MP) tree based on Bayesian methods. Results: Obvious phylogeographic structure was found in L. chinense. SAMOVA Submitted 13 September 2018 revealed seven groups matching the major landscape features of the L. chinense Accepted 26 December 2018 Published 1 February 2019 distribution area. The haplotype network showed three clades distributed in the eastern, southwestern, and northwestern regions. Separate northern and southern Corresponding author Faxin Yu, [email protected] refugia were found in the Wu Mountains and Yungui Plateau, with genetic admixture in the Dalou Mountains and Wuling Mountains. -
Dipterocarpaceae)
DNA Sequence-Based Identification and Molecular Phylogeny Within Subfamily Dipterocarpoideae (Dipterocarpaceae) Dissertation Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Ph.D.) at Forest Genetics and Forest Tree Breeding, Büsgen Institute Faculty of Forest Sciences and Forest Ecology Georg-August-Universität Göttingen By Essy Harnelly (Born in Banda Aceh, Indonesia) Göttingen, 2013 Supervisor : Prof. Dr. Reiner Finkeldey Referee : Prof. Dr. Reiner Finkeldey Co-referee : Prof. Dr. Holger Kreft Date of Disputation : 09.01.2013 2 To My Family 3 Acknowledgments First of all, I would like to express my deepest gratitude to Prof. Dr. Reiner Finkeldey for accepting me as his PhD student, for his support, helpful advice and guidance throughout my study. I am very grateful that he gave me this valuable chance to join his highly motivated international working group. I would like to thank Prof. Dr. Holger Kreft and Prof. Dr. Raphl Mitlöhner, who agreed to be my co-referee and member of examination team. I am grateful to Dr. Kathleen Prinz for her guidance, advice and support throughout my research as well as during the writing process. My deepest thankfulness goes to Dr. Sarah Seifert (in memoriam) for valuable discussion of my topic, summary translation and proof reading. I would also acknowledge Dr. Barbara Vornam for her guidance and numerous valuable discussions about my research topic. I would present my deep appreciation to Dr. Amarylis Vidalis, for her brilliant ideas to improve my understanding of my project. My sincere thanks are to Prof. Dr. Elizabeth Gillet for various enlightening discussions not only about the statistical matter, but also my health issues. -
Outline of Angiosperm Phylogeny
Outline of angiosperm phylogeny: orders, families, and representative genera with emphasis on Oregon native plants Priscilla Spears December 2013 The following listing gives an introduction to the phylogenetic classification of the flowering plants that has emerged in recent decades, and which is based on nucleic acid sequences as well as morphological and developmental data. This listing emphasizes temperate families of the Northern Hemisphere and is meant as an overview with examples of Oregon native plants. It includes many exotic genera that are grown in Oregon as ornamentals plus other plants of interest worldwide. The genera that are Oregon natives are printed in a blue font. Genera that are exotics are shown in black, however genera in blue may also contain non-native species. Names separated by a slash are alternatives or else the nomenclature is in flux. When several genera have the same common name, the names are separated by commas. The order of the family names is from the linear listing of families in the APG III report. For further information, see the references on the last page. Basal Angiosperms (ANITA grade) Amborellales Amborellaceae, sole family, the earliest branch of flowering plants, a shrub native to New Caledonia – Amborella Nymphaeales Hydatellaceae – aquatics from Australasia, previously classified as a grass Cabombaceae (water shield – Brasenia, fanwort – Cabomba) Nymphaeaceae (water lilies – Nymphaea; pond lilies – Nuphar) Austrobaileyales Schisandraceae (wild sarsaparilla, star vine – Schisandra; Japanese -
THE Magnoliaceae Liriodendron L. Magnolia L
THE Magnoliaceae Liriodendron L. Magnolia L. VEGETATIVE KEY TO SPECIES IN CULTIVATION Jan De Langhe (1 October 2014 - 28 May 2015) Vegetative identification key. Introduction: This key is based on vegetative characteristics, and therefore also of use when flowers and fruits are absent. - Use a 10× hand lens to evaluate stipular scars, buds and pubescence in general. - Look at the entire plant. Young specimens, shade, and strong shoots give an atypical view. - Beware of hybridisation, especially with plants raised from seed other than wild origin. Taxa treated in this key: see page 10. Questionable/frequently misapplied names: see page 10. Names referred to synonymy: see page 11. References: - JDL herbarium - living specimens, in various arboreta, botanic gardens and collections - literature: De Meyere, D. - (2001) - Enkele notities omtrent Liriodendron tulipifera, L. chinense en hun hybriden in BDB, p.23-40. Hunt, D. - (1998) - Magnolias and their allies, 304p. Bean, W.J. - (1981) - Magnolia in Trees and Shrubs hardy in the British Isles VOL.2, p.641-675. - or online edition Clarke, D.L. - (1988) - Magnolia in Trees and Shrubs hardy in the British Isles supplement, p.318-332. Grimshaw, J. & Bayton, R. - (2009) - Magnolia in New Trees, p.473-506. RHS - (2014) - Magnolia in The Hillier Manual of Trees & Shrubs, p.206-215. Liu, Y.-H., Zeng, Q.-W., Zhou, R.-Z. & Xing, F.-W. - (2004) - Magnolias of China, 391p. Krüssmann, G. - (1977) - Magnolia in Handbuch der Laubgehölze, VOL.3, p.275-288. Meyer, F.G. - (1977) - Magnoliaceae in Flora of North America, VOL.3: online edition Rehder, A. - (1940) - Magnoliaceae in Manual of cultivated trees and shrubs hardy in North America, p.246-253. -
Redalyc.CYSTOPTERIS (CYSTOPTERIDACEAE) DEL
Darwiniana ISSN: 0011-6793 [email protected] Instituto de Botánica Darwinion Argentina Arana, Marcelo D.; Mynssen, Claudine M. CYSTOPTERIS (CYSTOPTERIDACEAE) DEL CONO SUR Y BRASIL Darwiniana, vol. 3, núm. 1, 2015, pp. 73-88 Instituto de Botánica Darwinion Buenos Aires, Argentina Disponible en: http://www.redalyc.org/articulo.oa?id=66940406003 Cómo citar el artículo Número completo Sistema de Información Científica Más información del artículo Red de Revistas Científicas de América Latina, el Caribe, España y Portugal Página de la revista en redalyc.org Proyecto académico sin fines de lucro, desarrollado bajo la iniciativa de acceso abierto DARWINIANA, nueva serie 3(1): 73-88. 2015 Versión final, efectivamente publicada el 31 de julio de 2015 DOI: 10.14522/darwiniana.2015.31.639 ISSN 0011-6793 impresa - ISSN 1850-1699 en línea CYSTOPTERIS (CYSTOPTERIDACEAE) DEL CONO SUR Y BRASIL Marcelo D. Arana1 & Claudine M. Mynssen2 1 Orientación Plantas Vasculares, Departamento de Ciencias Naturales, Facultad de Ciencias Exactas, Físico-Quími- cas y Naturales, Universidad Nacional de Río Cuarto, Ruta 36 km 601, X5804ZAB Río Cuarto, Córdoba, Argentina; [email protected] (autor corresponsal). 2 Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Diretoria de Pesquisa Científica, Rua Pacheco Leão 915, CEP 22460-030 Rio de Janeiro; Rio de Janeiro, Brasil; [email protected] Abstract. Arana, M. D. & C. M. Mynssen. 2015. Revision of Cystopteris (Cystopteridaceae) from South Cone and Brazil. Darwiniana, nueva serie 3(1): 73-88. A taxonomical treatment of the representatives of Cystopteris (Cystopteridaceae) occurring in Argen- tina, Bolivia, Brazil, Chile and Uruguay is presented. In this region, the genus is represented by three species: Cystopteris apiiformis from Argentina and Chile, C. -
Phylogenomic Approach
Toward the ultimate phylogeny of Magnoliaceae: phylogenomic approach Sangtae Kim*1, Suhyeon Park1, and Jongsun Park2 1 Sungshin University, Korea 2 InfoBoss Co., Korea Mr. Carl Ferris Miller Founder of Chollipo Arboretum in Korea Chollipo Arboretum Famous for its magnolia collection 2020. Annual Meeting of Magnolia Society International Cholliop Arboretum in Korea. April 13th~22th, 2020 http://WWW.Chollipo.org Sungshin University, Seoul, Korea Dr. Hans Nooteboom Dr. Liu Yu-Hu Twenty-one years ago... in 1998 The 1st International Symposium on the Family Magnoliaceae, Gwangzhow Dr. Hiroshi Azuma Mr. Richard Figlar Dr. Hans Nooteboom Dr. Qing-wen Zeng Dr. Weibang Sun Handsome young boy Dr. Yong-kang Sima Dr. Yu-wu Law Presented ITS study on Magnoliaceae - never published Ten years ago... in 2009 Presented nine cp genome region study (9.2 kbp) on Magnoliaceae – published in 2013 2015 1st International Sympodium on Neotropical Magnoliaceae Gadalajara, 2019 3rd International Sympodium and Workshop on Neotropical Magnoliaceae Asterales Dipsacales Apiales Why magnolia study is Aquifoliales Campanulids (Euasterids II) Garryales Gentianales Laminales Solanales Lamiids important in botany? Ericales Asterids (Euasterids I) Cornales Sapindales Malvales Brassicales Malvids Fagales (Eurosids II) • As a member of early-diverging Cucurbitales Rosales Fabales Zygophyllales Celestrales Fabids (Eurosid I) angiosperms, reconstruction of the Oxalidales Malpighiales Vitales Geraniales Myrtales Rosids phylogeny of Magnoliaceae will Saxifragales Caryphyllales -
Study on the Genetic Structure Based on Geographic Populations of the Endangered Tree Species: Liriodendron Chinense
Article Study on the Genetic Structure Based on Geographic Populations of the Endangered Tree Species: Liriodendron chinense Peng-Yan Zhou 1,† , Li-Xing Hui 1,†, Shu-Jing Huang 1, Zhou-Xian Ni 1 , Fa-Xin Yu 2 and Li-An Xu 1,* 1 Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China; [email protected] (P.-Y.Z.); [email protected] (L.-X.H.); [email protected] (S.-J.H.); [email protected] (Z.-X.N.) 2 The Key Laboratory of Horticultural Plant Genetic and Improvement of Jiangxi Province, Institute of Biological Resources, Jiangxi Academy of Sciences, Nanchang 330096, China; [email protected] * Correspondence: [email protected]; Tel.: +86-025-8542-7882 † Peng-Yan Zhou and Li-Xing Hui contributed equal. Abstract: Liriodendron chinense (Hemsley) Sargent is a Class II protected plant in China as natural populations are on the verge of extinction. There is still a lack of systematic research on the genetic resources of its geographic populations. In this study, we used 20 pairs of SSR markers with high polymorphism to analyze a total of 808 L. chinense samples from 22 regions, and 63 Liriodendron tulipifera Linn samples from 2 regions were used as a comparison group. The results revealed a total of 78 alleles in L. chinense, and the average expected heterozygosity (He) was 0.558, showing a low level of genetic diversity. The degree of differentiation of L. chinense was high, with the differentiation coefficient (Fst) as high as 0.302, which is related to the low gene flow (Nm = 0.578). -
Arborerum Spring Planting Notes
ARNOLDIA A continuation of the BULLETIN OF POPULAR INFORMATION _ of the Arnold Arboretum, Harvard University VOLUME 16 .~Z.41~ 4, 1956 NUMBERS 4-5 ARBORETUM SPRING PLANTING NOTES planting at the Arnold Arboretum goes on year after year, unheralded Sand PRING unsung, yet many extremely interesting plants will eventually grow into the public’s notice. Young plants are necessarily pruned very heavily when they are transplanted to the grounds here, so that frequently several years elapse be- fore such plants eventually reach any real size and become noticeable to the horticultural-minded visitor. However, a close scrutiny of any year’s planting list will show many an old variety being replaced in young form (making it pos- sible to remove diseased or damaged specimens), and many new plants being placed that have never been in the Arboretum collections before. Some are prob- ably new to any American planting. Brief information concerning a few of the trees and shrubs planted out this spring will be of interest m this respect. It should be pointed out that to reach planting size, these plants ha~ e been growing in the nurseries of the Arnold Arboretum anywhere from one to sixteen years. Some must be tested for hardiness before they are planted in the perma- nent collections ; others must be checked when they flower to make certain they are named correctly. So, although they may be noted in the following pages as "new" to the permanent collections, they have all been growing in the Arbore- tum nurseries for several years. This is only part of a lengthy testing program for new plants which is going on continually, year after year. -
A Revised Family-Level Classification for Eupolypod II Ferns (Polypodiidae: Polypodiales)
TAXON — 11 May 2012: 19 pp. Rothfels & al. • Eupolypod II classification A revised family-level classification for eupolypod II ferns (Polypodiidae: Polypodiales) Carl J. Rothfels,1,7 Michael A. Sundue,2,7 Li-Yaung Kuo,3 Anders Larsson,4 Masahiro Kato,5 Eric Schuettpelz6 & Kathleen M. Pryer1 1 Department of Biology, Duke University, Box 90338, Durham, North Carolina 27708, U.S.A. 2 The Pringle Herbarium, Department of Plant Biology, University of Vermont, 27 Colchester Ave., Burlington, Vermont 05405, U.S.A. 3 Institute of Ecology and Evolutionary Biology, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 10617, Taiwan 4 Systematic Biology, Evolutionary Biology Centre, Uppsala University, Norbyv. 18D, 752 36, Uppsala, Sweden 5 Department of Botany, National Museum of Nature and Science, Tsukuba 305-0005, Japan 6 Department of Biology and Marine Biology, University of North Carolina Wilmington, 601 South College Road, Wilmington, North Carolina 28403, U.S.A. 7 Carl J. Rothfels and Michael A. Sundue contributed equally to this work. Author for correspondence: Carl J. Rothfels, [email protected] Abstract We present a family-level classification for the eupolypod II clade of leptosporangiate ferns, one of the two major lineages within the Eupolypods, and one of the few parts of the fern tree of life where family-level relationships were not well understood at the time of publication of the 2006 fern classification by Smith & al. Comprising over 2500 species, the composition and particularly the relationships among the major clades of this group have historically been contentious and defied phylogenetic resolution until very recently. -
Phyllodoce Glanduliflora Yellow Mountainheath (Ericaceae)
68Plant Propagation Protocol for [Phyllodoce glanduliflora] ESRM 412 – Native Plant Production Protocol URL: https://courses.washington.edu/esrm412/protocols/PHGL6.PDF Washington distribution North America distribution TAXONOMY Plant Family Scientific Name Ericaceae Common Name Heath family Species Scientific Name Scientific Name Phyllodoce glanduliflora (hook.) Coville yellow mountainheath (1) Varieties Phyllodoce aleutica (Spreng.) A. Heller ssp. glanduliflora (Hook.) Hultén (1) Sub-species N/A Cultivar Phyllodoce empetriformis (pink mountain heather) Phyllodoce caerula (purple mountain heather) Phyllodoce breweri (brewer’s mountain-heather) (1) Common Synonym(s) Menziesia glanduliflora Hook. Phyllodoce aleutica (Spreng.) Heller Phyllodoce aleutica (Spreng.) Heller ssp. glanduliflora(Hook.) Hultén (1) Common Name Yellow mountain heath (1) Species Code (as per PHGL6 (1) USDA Plants database) GENERAL INFORMATION Geographical range Alaska, Canada, Washington, Oregon, Idaho, Montana, Wyoming. (7) Ecological distribution Dry to moist open forest, meadows, upper montane to alpine zones. (7) Climate and elevation Found at high elevations ranging from Alaska, British Columbia to Oregon range and Wyoming.(7) Local habitat and Common at higher elevations. (2) abundance Plant strategy type / Stress-tolerator. (2) successional stage Plant characteristics Low-growing shrub with mulch-branched erect stems from 4-15 in. tall and the alternating evergreen leaves are small and needle-like and grow to less than 1 in long. The edges of the leaves have tiny glands, and the underside of the leaves are grooved. The yellow flowers are distinguishing feature of yellow mountain- heather; they are pale yellow to greenish, urn-shapes at less than 1 cm. Both flowers and stalks are sticky and hairy. (7) (4) PROPAGATION DETAILS Ecotype N/A Propagation Goal Plants Propagation Method Seeds Product Type Plants Stock Type Seeds Time to Grow 1 year Target Specifications Seeds Propagule Collection Seed collection should occur from late summer to early fall. -
Nazrin Full Phd Thesis (150246576
Maintenance and conservation of Dipterocarp diversity in tropical forests _______________________________________________ Mohammad Nazrin B Abdul Malik A thesis submitted in partial fulfilment of the degree of Doctor of Philosophy Faculty of Science Department of Animal and Plant Sciences November 2019 1 i Thesis abstract Many theories and hypotheses have been developed to explain the maintenance of diversity in plant communities, particularly in hyperdiverse tropical forests. Maintenance of the composition and diversity of tropical forests is vital, especially species of high commercial value. I focus on the high value dipterocarp timber species of Malaysia and Borneo as these have been extensive logged owing to increased demands from global timber trade. In this thesis, I explore the drivers of diversity of this group, as well as the determinants of global abundance, conservation and timber value. The most widely supported hypothesis for explaining tropical diversity is the Janzen Connell hypothesis. I experimentally tested the key elements of this, namely density and distance dependence, in two dipterocarp species. The results showed that different species exhibited different density and distance dependence effects. To further test the strength of this hypothesis, I conducted a meta-analysis combining multiple studies across tropical and temperate study sites, and with many species tested. It revealed significant support for the Janzen- Connell predictions in terms of distance and density dependence. Using a phylogenetic comparative approach, I highlight how environmental adaptation affects dipterocarp distribution, and the relationships of plant traits with ecological factors and conservation status. This analysis showed that environmental and ecological factors are related to plant traits and highlights the need for dipterocarp conservation priorities. -
Pollen Morphology of the Tribe Phyllodoceae (Ericoideae, Ericaceae) and Its Taxonomic Significance
Title Pollen morphology of the tribe Phyllodoceae (Ericoideae, Ericaceae) and its taxonomic significance Author(s) Sarwar, A.K.M. Golam; Takahashi, Hideki Bangladesh journal of plant taxonomy, 21(2), 129-137 Citation https://doi.org/10.3329/bjpt.v21i2.21351 Issue Date 2014-12 Doc URL http://hdl.handle.net/2115/57636 Type article File Information manuscript.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP Bangladesh J. Plant Taxon. 21(2): 129-137, 2014 (December) © 2014 Bangladesh Association of Plant Taxonomists POLLEN MORPHOLOGY OF THE TRIBE PHYLLODOCEAE (ERICOIDEAE, ERICACEAE) AND ITS TAXONOMIC SIGNIFICANCE1 2 A. K. M. GOLAM SARWAR AND HIDEKI TAKAHASHI Laboratory of Systematic Botany, Graduate School of Agriculture, Hokkaido University, Japan Keywords: Pollen morphology; Exine sculpture; Phyllodoceae; Taxonomic significance. Abstract Pollen morphology of 13 taxa belonging to 5 genera of the tribe Phyllodoceae (Ericaceae) was examined by means of light and scanning electron microscopy (LM and SEM, respectively), or SEM alone. In Phyllodoceae, 3-colpor(oid)ate, minute to medium, oblate pollen grains are united usually in tetrahedral tetrads. Pollen tetrads are generally characterized by the presence of viscin threads except Elliottia pyroliflora, Epigaea asiatica and Phyllodoce caerulea. The absence of viscin threads might indicate to a secondary loss, since these are present at least in some species within all the genera of Phyllodoceae. The pollen morphological data confirm the infra- and inter-generic relationships as identified by molecular phylogeny of Phyllodoceae and/or vice-versa. Although various palynological characters were found to be taxonomically important at different taxonomic levels, the apocolpial exine sculpture is emerged as one of the most important palynological features of systematic importance.