Literature Digest, May 2017
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Approach to Site-Selective Protein Modification JUSTIN M
A “Tag-and-Modify” Approach to Site-Selective Protein Modification JUSTIN M. CHALKER, GONC-ALO J. L. BERNARDES, AND BENJAMIN G. DAVIS* Department of Chemistry, University of Oxford, Chemistry Research Laboratory, 12 Mansfield Road, Oxford OX1 3TA, United Kingdom RECEIVED ON FEBRUARY 27, 2011 CONSPECTUS ovalent modification can expand a protein's functional capacity. Fluorescent or radioactive labeling, for instance, allows C imaging of a protein in real time. Labeling with an affinity probe enables isolation of target proteins and other interacting molecules. At the other end of this functional spectrum, protein structures can be naturally altered by enzymatic action. ProteinÀprotein interactions, genetic regulation, and a range of cellular processes are under the purview of these post- translational modifications. The ability of protein chemists to install these covalent additions selectively has been critical for elucidating their roles in biology. Frequently the transformations must be applied in a site-specific manner, which demands the most selective chemistry. In this Account, we discuss the development and application of such chemistry in our laboratory. A centerpiece of our strategy is a “tag-and-modify” approach, which entails sequential installation of a uniquely reactive chemical group into the protein (the “tag”) and the selective or specific modification of this group. The chemical tag can be a natural or unnatural amino acid residue. Of the natural residues, cysteine is the most widely used as a tag. Early work in our program focused on selective disulfide formation in the synthesis of glycoproteins. For certain applications, the susceptibility of disulfides to reduction was a limitation and prompted the development of several methods for the synthesis of more stable thioether modifications. -
A Transition-Metal-Free & Diazo-Free Styrene Cyclopropanation
Chemical Science View Article Online EDGE ARTICLE View Journal A transition-metal-free & diazo-free styrene cyclopropanation† Cite this: DOI: 10.1039/c9sc02749a ab a All publication charges for this article Ana G. Herraiz and Marcos G. Suero * have been paid for by the Royal Society of Chemistry An operationally simple and broadly applicable novel cyclopropanation of styrenes using gem-diiodomethyl Received 5th June 2019 carbonyl reagents has been developed. Visible-light triggered the photoinduced generation of iodomethyl Accepted 17th August 2019 carbonyl radicals, able to cyclopropanate a wide array of styrenes with excellent chemoselectivity and DOI: 10.1039/c9sc02749a functional group tolerance. To highlight the utility of our photocyclopropanation, we demonstrated the late-stage functionalization of biomolecule derivatives. rsc.li/chemical-science Introduction activated alkenes and showed an excellent functional group tolerance and chemoselectivity, however, the process was c Over the last few decades, one of the main challenges in the exclusively evaluated for methylene transfer via ( )CH2I. Creative Commons Attribution-NonCommercial 3.0 Unported Licence. synthesis of cyclopropane rings1 – a prevalent structural motif Moreover, Charette and co-workers developed a radical bor- in pharmaceutical agents2 and natural products3 – has been to ocyclopropanation enabled by ow techniques, UVA light and develop robust and general alkene cyclopropanations that avoid xanthone as photocatalyst.11 This reaction involved the gener- the use of -
Total Synthesis of the Phytopathogen (+)-Fomannosin
TOTAL SYNTHESIS OF THE PHYTOPATHOGEN (+)-FOMANNOSIN DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Xiaowen Peng, M. S. ***** The Ohio State University 2006 Dissertation Committee: Approved by Professor Leo A. Paquette, Advisor Professor David J. Hart _________________________________ Professor T. V. RajanBabu Advisor Graduate Program in Chemistry ABSTRACT Fomannosin (1) is a sesquiterpene metabolite isolated in 1967 from the medium of the still culture of the wood-rotting fungus, Fomes annosus (Kr.) Karst. It was found to be toxic toward 2-year-old pinus tadae seedlings, Chlorella pyrenoidose, and certain bacteria. Fomannosin features a unique highly strained methylenecyclobutene unit and a reactive doubly unsaturated lactone. It is very sensitive toward both acid and base, posing a considerable challenge to synthetic chemists. The enantioselective total synthesis of (+)-fomannosin was completed in 35 steps starting from known tosylate 13. A zirconocene-mediated ring contraction reaction of vinylated furanosides 20 or 21 was utilized to construct the highly substituted cyclobutane 27. The cyclopentene ring was assembled through a ring-closing metathesis reaction. The lactone ring was then installed by a Knoevenagel condensation of thioester 54. Introduction of the cyclopentanone functionality was accomplished through a dihydroxylation, oxidation and SmI2-mediated -deoxygenation reaction sequence to provide lactones 61 and 62. After the PMB protecting group was removed by trifluoroacetic acid under anhydrous conditions, the first dehydration was effected through the formation of a cyclic ii sulfite. The second dehydration was achieved through the elimination of trifluoromethanesulfonic acid. Deprotection of the TBS ether led to the isolation of (+)- fomannosin. -
Ncomms12703.Pdf
ARTICLE Received 17 Feb 2016 | Accepted 26 Jul 2016 | Published 2 Sep 2016 DOI: 10.1038/ncomms12703 OPEN Chemoselective synthesis and analysis of naturally occurring phosphorylated cysteine peptides Jordi Bertran-Vicente1, Martin Penkert1,2, Olaia Nieto-Garcia1,2, Jean-Marc Jeckelmann3, Peter Schmieder1, Eberhard Krause1 & Christian P. R. Hackenberger1,2 In contrast to protein O-phosphorylation, studying the function of the less frequent N- and S-phosphorylation events have lagged behind because they have chemical features that prevent their manipulation through standard synthetic and analytical methods. Here we report on the development of a chemoselective synthetic method to phosphorylate Cys side-chains in unprotected peptides. This approach makes use of a reaction between nucleophilic phosphites and electrophilic disulfides accessible by standard methods. We achieve the stereochemically defined phosphorylation of a Cys residue and verify the modification using electron-transfer higher-energy dissociation (EThcD) mass spectrometry. To demonstrate the use of the approach in resolving biological questions, we identify an endogenous Cys phosphorylation site in IICBGlc, which is known to be involved in the carbohydrate uptake from the bacterial phosphotransferase system (PTS). This new chemical and analytical approach finally allows further investigating the functions and significance of Cys phosphorylation in a wide range of crucial cellular processes. 1 Leibniz-Institut fu¨r Molekulare Pharmakologie (FMP), Robert-Ro¨ssle-Str. 10, D-13125 Berlin, Germany. 2 Humboldt-Universita¨t zu Berlin, Institut fu¨r Chemie, Brook-Taylor-Str. 2, D-12489 Berlin, Germany. 3 Institute of Biochemistry and Molecular Medicine, University of Bern, 3012 Bern, Switzerland. Correspondence and requests for materials should be addressed to C.P.R.H. -
Organophosphate Insecticides
CHAPTER 4 HIGHLIGHTS Organophosphate Insecticides Acts through phosphorylation of the acetylcholinesterase enzyme Since the removal of organochlorine insecticides from use, organophosphate at nerve endings insecticides have become the most widely used insecticides available today. More Absorbed by inhalation, than forty of them are currently registered for use and all run the risk of acute ingestion, and skin and subacute toxicity. Organophosphates are used in agriculture, in the home, penetration in gardens, and in veterinary practice. All apparently share a common mecha- Muscarinic, nicotinic & CNS nism of cholinesterase inhibition and can cause similar symptoms. Because they effects share this mechanism, exposure to the same organophosphate by multiple routes or to multiple organophosphates by multiple routes can lead to serious additive Signs and Symptoms: toxicity. It is important to understand, however, that there is a wide range of Headache, hypersecretion, toxicity in these agents and wide variation in cutaneous absorption, making muscle twitching, nausea, specific identification and management quite important. diarrhea Respiratory depression, seizures, loss of consciousness Toxicology Miosis is often a helpful Organophosphates poison insects and mammals primarily by phosphory- diagnostic sign lation of the acetylcholinesterase enzyme (AChE) at nerve endings. The result is a loss of available AChE so that the effector organ becomes overstimulated by Treatment: the excess acetylcholine (ACh, the impulse-transmitting substance) in the nerve Clear airway, improve tissue ending. The enzyme is critical to normal control of nerve impulse transmission oxygenation from nerve fibers to smooth and skeletal muscle cells, glandular cells, and Administer atropine sulfate autonomic ganglia, as well as within the central nervous system (CNS). -
Asymmetric Synthesis of Organophosphates and Their
ASYMMETRIC SYNTHESIS OF ORGANOPHOSPHATES AND THEIR DERIVATIVES Thesis Submitted to The College of Arts and Sciences of the UNIVERSITY OF DAYTON In Partial Fulfillment of the Requirements for The Degree of Master of Science in Chemistry By Batool J. Murtadha Dayton, Ohio May 2020 ASYMMETRIC SYNTHESIS OF ORGANOPHOSPHATES AND THEIR DERIVATIVES Name: Murtadha, Batool J. APPROVED BY: __________________________________ Jeremy Erb, Ph.D. Research Advisor Assistant Professor Department of Chemistry University of Dayton ___________________________________ Vladimir Benin, Ph.D. Professor of Chemistry Department of Chemistry University of Dayton ___________________________________ Justin C. Biffinger, Ph.D. Committee Member Assistant Professor Department of Chemistry University of Dayton ii © Copyright by Batool J. Murtadha All rights reserved 2020 iii ABSTRACT ASYMMETRIC SYNTHESIS OF ORGANOPHOSPHATES AND THEIR DERIVATIVES Name: Murtadha, Batool J. University of Dayton Advisor: Dr. Jeremy Erb Organophosphorus compounds (OPs) are widely used in the agricultural industry especially in the pesticide market. Phosphates play a huge role as biological compounds in the form of energy carrier compounds like ATP, and medicine as antivirals. OPs have become increasingly important as evidenced by the publication of new methods devoted to their uses and synthesis. These well-established studies lay the basis for industrial organic derivatives of phosphorus preparations. The current work explored methods of synthesizing chiral organophosphate triesters. We experimented with different processes roughly divided into either an electrophilic or nucleophilic strategy using chiral Lewis acids, organocatalysts (HyperBTM), activating agents, and chiral auxiliaries with the goal of control stereoselectivity. These methods were explored through the use of different starting materials like POCl3, triethyl phosphate, methyl phosphordichloradate, and PSCl3. -
Environmental Health Criteria 63 ORGANOPHOSPHORUS
Environmental Health Criteria 63 ORGANOPHOSPHORUS INSECTICIDES: A GENERAL INTRODUCTION Please note that the layout and pagination of this web version are not identical with the printed version. Organophophorus insecticides: a general introduction (EHC 63, 1986) INTERNATIONAL PROGRAMME ON CHEMICAL SAFETY ENVIRONMENTAL HEALTH CRITERIA 63 ORGANOPHOSPHORUS INSECTICIDES: A GENERAL INTRODUCTION This report contains the collective views of an international group of experts and does not necessarily represent the decisions or the stated policy of the United Nations Environment Programme, the International Labour Organisation, or the World Health Organization. Published under the joint sponsorship of the United Nations Environment Programme, the International Labour Organisation, and the World Health Organization World Health Orgnization Geneva, 1986 The International Programme on Chemical Safety (IPCS) is a joint venture of the United Nations Environment Programme, the International Labour Organisation, and the World Health Organization. The main objective of the IPCS is to carry out and disseminate evaluations of the effects of chemicals on human health and the quality of the environment. Supporting activities include the development of epidemiological, experimental laboratory, and risk-assessment methods that could produce internationally comparable results, and the development of manpower in the field of toxicology. Other activities carried out by the IPCS include the development of know-how for coping with chemical accidents, coordination -
A DFT Study on Sumanene, Corannulene and Nanosheet As the Anodes in Li−Ion Batteries
Iran. J. Chem. Chem. Eng. Research Article Vol. 39, No. 6, 2020 Archive of SID A DFT study on Sumanene, Corannulene and Nanosheet as the Anodes in Li−Ion Batteries Gharibzadeh, Fatemeh Department of Chemistry, Tabriz Branch, Islamic Azad University, Tabriz, I.R. IRAN Vessally, Esmail Department of Chemistry, Payame Noor University, Tehran, I.R. IRAN Edjlali, Ladan*+; Es’haghi, Moosa Department of Chemistry, Tabriz Branch, Islamic Azad University, Tabriz, I.R. IRAN Mohammadi, Robab Department of Chemistry, Payame Noor University, Tehran, I.R. IRAN ABSTRACT: Herein, we studied interactions between the Li neutral atom and Li+ ion and three types of nanoparticles including sumanene (Sum), corannulene (Cor), and nanosheet to obtain the cell voltage (V) for Li−ion batteries (LIBs). Total energies, geometry optimizations, Frontier Molecular Orbital (FMO), and Density of States (DOS) analyses have been obtained using M06−2X level of theory and 6−31+G (d,p) basis set. DFT calculations clarified that the changes of energy + adsorption between Li ion and nanoparticles, Ead, are in the order: Sheet > Sum−I > Cor > Cor−I > Sum. However, the Vcell for Sum is the highest. The changes in Vcell of Li−ion batteries (LIBs) are in the order: Sum > Sheet > Sum−i > Cor > Cor−i. This study theoretically indicates the possibility of Li as the anode in the battery field. KEYWORDS: DFT study; Sumanene; Corannulene; Nanosheet; Li−ion Batteries. INTRODUCTION Rechargeable batteries are very important to batteries due to its low density, high specific capacity, generation the electricity. The dry batteries, such as Zn−C, and the lowest electrochemical potential of the periodic table [1]. -
Enantioselective Synthesis of a Chiral Nitrogen-Doped Buckybowl
ARTICLE Received 9 Mar 2012 | Accepted 9 May 2012 | Published 12 Jun 2012 DOI: 10.1038/ncomms1896 Enantioselective synthesis of a chiral nitrogen- doped buckybowl Qitao Tan1, Shuhei Higashibayashi1,2, Sangita Karanjit2 & Hidehiro Sakurai1,2 Bowl-shaped aromatic compounds, namely buckybowls constitute a family of curved polycyclic aromatic carbons along with fullerenes and carbon nanotubes. Doping of heteroatoms to the carbon frameworks of such aromatic compounds drastically modulates their physical and chemical properties. In contrast to nitrogen-doped azafullerenes or carbon nanotubes, synthesis of azabuckybowls, nitrogen-doped buckybowls, remains an unsolved challenging task. Here we report the first enantioselective synthesis of a chiral azabuckybowl, triazasumanene. X-ray crystallographic analysis confirmed that the doping of nitrogen induces a more curved and deeper bowl structure than in all-carbon buckybowls. As a result of the deeper bowl structure, the activation energy for the bowl inversion (thermal flipping of the bowl structure) reaches an extraordinarily high value (42.2 kcal per mol). As the bowl inversion corresponds to the racemization process for chiral buckybowls, this high bowl inversion energy leads to very stable chirality of triazasumanene. 1 Research Center for Molecular Scale Nanoscience, Institute for Molecular Science, Myodaiji, Okazaki 444-8787, Japan. 2 School of Physical Sciences, the Graduate University for Advanced Studies, Myodaiji, Okazaki 444-8787, Japan. Correspondence and requests for materials should be addressed to S.H. (email: [email protected]). NATURE COMMUNICATIONS | 3:891 | DOI: 10.1038/ncomms1896 | www.nature.com/naturecommunications © 2012 Macmillan Publishers Limited. All rights reserved. ARTICLE NatUre cOMMUNicatiONS | DOI: 10.1038/ncomms1896 olycyclic aromatic carbons with curved π-conjugated struc- R N tures, such as fullerenes and carbon nanotubes (CNTs), exhibit Pfascinating physicochemical properties especially in material science1–3. -
Annual Review 2018 from the DIRECTOR GENERAL
Published by Institute for Molecular Science National Institutes of Natural Sciences Myodaiji, Okazaki 444-8585, Japan Phone: +81-564-55-7418 (Secretary Room) Fax: +81-564-54-2254 (Secretary Room) URL: http://www.ims.ac.jp/en/ Editorial Committee 2018 Chairperson MASAOKA, Shigeyuki Vice-Chairperson TANAKA, Kiyohisa NGUYEN, Thanh Phuc ITO, Soichi EHARA, Masahiro FUJIMOTO, Masaki IZAWA, Seiichiro ANDO, Jun KONDO, Mio FURUIKE, Yoshihiko KOSUGI, Takahiro YOSHIZAWA, Daichi NAGASONO, Hisayo NAKAMURA, Rie Annual Review 2018 FROM THE DIRECTOR GENERAL Institute for Molecular Science (IMS) is one of the world’s core research facilities for molecular science and is also a center for inter-university joint research in Japan. It sets an extremely wide range of research goals, from understanding the behavior of individual molecules to that of collective molecular systems. These molecular systems have close relation to scientific understanding of biology, engineering and space sciences. Currently, IMS is engaged in six (four plus two) areas of research: Theoretical and computational molecular science, Photo-molecular science, Materials molecular science, and Life and coordination-complex molecular science. Research Center of Integrative Molecular Systems (CIMoS), the fifth research division of IMS, has started from April, 2013 to develop the highly functional molecular systems such as molecular rhythms, sensing and response, and even self-repair. Starting from April 2017, Center for Mesoscopic Sciences (CMS) is launched to develop innovative methodology of studying mesoscopic molecular systems, covering from theoretical methods to leading-edge measurement methods. In addition to these research divisions, IMS has three research facilities; UVSOR Synchrotron Facility, Instrument Center facilitated with various molecular detectors, and Equipment Development Center. -
Optoelectronic Properties of Higher Acenes, Their BN Analogue and Substituted Derivatives
Materials Chemistry and Physics 170 (2016) 210e217 Contents lists available at ScienceDirect Materials Chemistry and Physics journal homepage: www.elsevier.com/locate/matchemphys Optoelectronic properties of higher acenes, their BN analogue and substituted derivatives * Stevan Armakovic a, , Sanja J. Armakovic b, Vladimir Holodkov c, Svetlana Pelemis d a University of Novi Sad, Faculty of Sciences, Department of Physics, Trg Dositeja Obradovica 4, 21000, Novi Sad, Serbia b University of Novi Sad, Faculty of Sciences, Department of Chemistry, Biochemistry and Environmental Protection, Trg Dositeja Obradovica 3, 21000, Novi Sad, Serbia c Educons University, Faculty of Sport and Tourism - TIMS, Radnicka 30a, 21000, Novi Sad, Serbia d University of East Sarajevo, Faculty of Technology, Karakaj bb, 75400, Zvornik, Republic of Srpska, Bosnia and Herzegovina highlights Optoelectronic properties of structures based on higher acenes have been investigated. Oxidation and reduction potentials together with reorganization energies are calculated. TADF is analyzed through calculation of DE(S1ÀT1), which is much better for BN analogues. Reorganization energies of acenes improve with the increase of number of benzene rings. article info abstract Article history: We have investigated optoelectronic properties of higher acenes: pentacene, hexacene, heptacene, Received 18 March 2015 octacene, nonacene, decacene and their boron-nitride (BN) analogues, within the framework of density Received in revised form functional theory (DFT). We have also investigated the optoelectronic properties of acenes modified by 4 November 2015 BN substitution. Calculated optoelectronic properties encompasses: oxidation and reduction potentials, Accepted 19 December 2015 electron and hole reorganization energies and energy difference between excited first singlet and triplet Available online 28 December 2015 states DE(S1ÀT1). -
Synthesis and Properties of Graphene Quantum Dots and Nanomeshes
Synthesis and properties of graphene quantum dots and 370 S nanomeshes Thèse de doctorat de l'Université Paris-Saclay 2018SACL préparée à l’Université Paris-Sud NNT : École doctorale n°571 Sciences chimiques : molécules, matériaux, instrumentation et biosystèmes (2MIB) Spécialité de doctorat: Chimie Thèse présentée et soutenue à Saint-Aubin, le 08 octobre 2018, par M. Julien Lavie Composition du Jury : M. Alain Pénicaud Directeur de Recherche, CNRS (– CRPP) Président du jury Mme Stéphanie Legoupy Directeur de Recherche, CNRS (– MOLTECH ANJOU) Rapporteur M. Jean Weiss Directeur de Recherche, CNRS (– Institut de Chimie de Strasbourg) Rapporteur M. Vincent Huc Chargé de Recherche, CNRS (– ICMMO) Examinateur M. Jean-Sébastien Lauret Professeur, Université Paris-Sud (– LAC) Examinateur M. Stéphane Campidelli Chercheur, CEA (– NIMBE) Directeur de thèse Index of abbreviations 2D Two-dimensional 2-TBQP 2,7,13,18-Tetrabromodibenzo[a,c]dibenzo[5,6:7,8]quinoxalino- [2,3-i]phenazine AC Armchair AFM Atomic force microscopy C78 C78H26 C78C12 C126H122 C78Cl C78Cl26 C96 C96H30 C96C12 C168H174 C96Cl C96Cl27H3 C96L Linear C96H30 C96LC12 Linear C144H126 C96LCl Linear C96Cl30 C132 C132H34 C132C12 C240H250 C132Cl C132H2Cl32 C162 C162H38 C162C12 C258H230 C162Cl C162H2Cl36 CDHC Photochemical cyclodehydrochlorination C-dots Carbon dots CHmP Cyclohexa-m-phenylene CHP Cyclohexyl pyrrolidone CNT Carbon nanotube CQD Carbon quantum dots CVD Chemical vapor deposition DCE 1,2-Dichloroethane DCM Dichloromethane DCTB Trans-2-[3-(4-tert-Butylphenyl)-2-methyl-2- propenylidene]malononitrile