First Report of Root Rot Caused by Phytophthora Bilorbang on Olea Europaea in Italy
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Plant, Microbiology and Genetic Science and Technology Duccio
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Florence Research DOCTORAL THESIS IN Plant, Microbiology and Genetic Science and Technology section of " Plant Protection" (Plant Pathology), Department of Agri-food Production and Environmental Sciences, University of Florence Phytophthora in natural and anthropic environments: new molecular diagnostic tools for early detection and ecological studies Duccio Migliorini Years 2012/2015 DOTTORATO DI RICERCA IN Scienze e Tecnologie Vegetali Microbiologiche e genetiche CICLO XXVIII COORDINATORE Prof. Paolo Capretti Phytophthora in natural and anthropic environments: new molecular diagnostic tools for early detection and ecological studies Settore Scientifico Disciplinare AGR/12 Dottorando Tutore Dott. Duccio Migliorini Dott. Alberto Santini Coordinatore Prof. Paolo Capretti Anni 2012/2015 1 Declaration I hereby declare that this submission is my own work and that, to the best of my knowledge and belief, it contains no material previously published or written by another person nor material which to a substantial extent has been accepted for the award of any other degree or diploma of the university or other institute of higher learning, except where due acknowledgment has been made in the text. Duccio Migliorini 29/11/2015 A copy of the thesis will be available at http://www.dispaa.unifi.it/ Dichiarazione Con la presente affermo che questa tesi è frutto del mio lavoro e che, per quanto io ne sia a conoscenza, non contiene materiale precedentemente pubblicato o scritto da un'altra persona né materiale che è stato utilizzato per l’ottenimento di qualunque altro titolo o diploma dell'Università o altro istituto di apprendimento, a eccezione del caso in cui ciò venga riconosciuto nel testo. -
Background: Threat Abatement Plan for Disease in Natural Ecosystems Caused by Phytophthora Cinnamomi
Background: Threat abatement plan for disease in natural ecosystems caused by Phytophthora cinnamomi January 2014 Background: Threat abatement plan for disease in natural ecosystems caused by Phytophthora cinnamomi © Copyright Commonwealth of Australia, 2014 ISBN: 978-1-921733-94-9 Background: Threat abatement plan for disease in natural ecosystems caused by Phytophthora cinnamomi is licensed by the Commonwealth of Australia for use under a Creative Commons By Attribution 3.0 Australia licence with the exception of the Coat of Arms of the Commonwealth of Australia, the logo of the agency responsible for publishing the report, content supplied by third parties, and any images depicting people. For licence conditions see: http://creativecommons.org/licenses/by/3.0/au/. This report should be attributed as ‘Background: Threat abatement plan for disease in natural ecosystems caused by Phytophthora cinnamomi, Commonwealth of Australia, 2014’. The views and opinions expressed in this publication are those of the authors and do not necessarily reflect those of the Australian Government or the Minister for the Environment. The contents of this document have been compiled using a range of source materials and are valid as at August 2013. While reasonable efforts have been made to ensure that the contents of this publication are factually correct, the Commonwealth does not accept responsibility for the accuracy or completeness of the contents, and shall not be liable for any loss or damage that may be occasioned directly or indirectly through the use of, or reliance on, the contents of this publication. Photo credits Front cover: Mondurup Peak, Stirling Range, 2010 (Department of Parks and Wildlife, Western Australia) Back cover: Wildflowers on Mondurup Peak, Stirling Range, 1993 (Rob Olver) ii / Background: Threat abatement plan for disease in natural ecosystems caused by Phytophthora cinnamomi Contents 1. -
Aquatic Assemblages from Edna Metabarcoding 1 Casting a Broader
1 Running Head: Aquatic assemblages from eDNA metabarcoding 2 Casting a broader net: Using microfluidic metagenomics to capture aquatic biodiversity data from 3 diverse taxonomic targets 4 Laura L. Hauck1†, Kevin A. Weitemier2†, Brooke E. Penaluna1, Tiffany Garcia2, and Richard Cronn1* 5 1U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station, 3200 SW Jefferson Way, 6 Corvallis, OR 97331, email: [email protected] 7 2Oregon State University, Department of Fisheries and Wildlife, 104 Nash Hall, Corvallis, OR 97331 8 Tel: 1 (541) 737-7291 Fax: 1 (541) 750-7329 *Author for correspondence 9 †L. Hauck and K. Weitemier should be considered joint first author. 10 11 Abstract 12 Environmental DNA (eDNA) assays for single- and multi-species detection show promise for providing 13 standardized assessment methods for diverse taxa, but techniques for evaluating multiple taxonomically- 14 divergent assemblages are in their infancy. We evaluated whether microfluidic multiplex metabarcoding and 15 high-throughput sequencing could identify diverse aquatic and riparian assemblages from 48 taxon-general and 16 taxon-specific metabarcode primers. eDNA screening was paired with electrofishing along a stream continuum 17 to evaluate congruence between methods. A fish hatchery located midway along the stream continuum 18 provided a dispersal barrier, and a point source for non-native White Sturgeon (Acipencer transmontanus). 19 Microfluidic metabarcoding detected all 13 species observed by electrofishing, with overall accuracy of 86%. 20 Taxon-specific barcoding primers were more successful than taxon-general universal metabarcoding primers at 21 classifying sequences to species. Both types of markers detected a transition from downstream sites dominated 22 by multiple fish species, to upstream sites dominated by a single species; however, we failed to detect a 23 transition in amphibian population structure. -
Agnes Virginia Simamora
The description, pathogenicity and epidemiology of Phytophthora boodjera, a new nursery pathogen of Eucalyptus from Western Australia by Agnes Virginia Simamora B.Sc. Agriculture (Universitas Nusa Cendana) MCP (Adelaide University) The thesis is submitted for the degree of Doctor of Philosophy School of Veterinary and Life Sciences Murdoch University Perth, Western Australia October 2016 Declaration I hereby declare that the work in this thesis is my own account of my research and contains as its main content work, which has not previously been submitted for a degree at any tertiary education institution. To the best of my knowledge, all work performed by others, published or unpublished, has been acknowledged. Agnes V. Simamora October 2016 ii Acknowledgments First and foremost I praise the Almighty God, my creator, the one who gives me strength and knows the plans intended for me; thank you for your graciousness and love. You are the one who gives me power to be successful. Many people have vitally assisted in making this PhD possible and pleasurable and I will be eternally grateful to you all. It is my great pleasure to express my gratitude to all those who have supported me and helped me during the past four years. Personally, I would like to especially thank my three supervisors (Prof. Giles Hardy, Assoc. Prof. Treena Burges, and Mike Stukely), whom I think had the hardest job. Thank you for giving me this opportunity, providing me with countless valuable guidance, and supporting me on my experiments and writing skills especially in times of adversity. Thank you so much for being patient with me when I still had much to learn. -
Canker and Decline Diseases Caused by Soil- and Airborne Phytophthora Species in Forests and Woodlands
Persoonia 40, 2018: 182–220 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj REVIEW ARTICLE https://doi.org/10.3767/persoonia.2018.40.08 Canker and decline diseases caused by soil- and airborne Phytophthora species in forests and woodlands T. Jung1,2, A. Pérez-Sierra 3, A. Durán4, M. Horta Jung1,2, Y. Balci 5, B. Scanu 6 Key words Abstract Most members of the oomycete genus Phytophthora are primary plant pathogens. Both soil- and airborne Phytophthora species are able to survive adverse environmental conditions with enduring resting structures, mainly disease management sexual oospores, vegetative chlamydospores and hyphal aggregations. Soilborne Phytophthora species infect fine epidemic roots and the bark of suberized roots and the collar region with motile biflagellate zoospores released from sporangia forest dieback during wet soil conditions. Airborne Phytophthora species infect leaves, shoots, fruits and bark of branches and stems invasive pathogens with caducous sporangia produced during humid conditions on infected plant tissues and dispersed by rain and wind nursery infestation splash. During the past six decades, the number of previously unknown Phytophthora declines and diebacks of root rot natural and semi-natural forests and woodlands has increased exponentially, and the vast majority of them are driven by introduced invasive Phytophthora species. Nurseries in Europe, North America and Australia show high infestation rates with a wide range of mostly exotic Phytophthora species. Planting of infested nursery stock has proven to be the main pathway of Phytophthora species between and within continents. This review provides in- sights into the history, distribution, aetiology, symptomatology, dynamics and impact of the most important canker, decline and dieback diseases caused by soil- and airborne Phytophthora species in forests and natural ecosystems of Europe, Australia and the Americas. -
Download Report
final report Project code: B.WBC.0030 Prepared by: Louise Morin CSIRO Health and Biosecurity Date published: 1 September 2018 PUBLISHED BY Meat and Livestock Australia Limited Locked Bag 1961 NORTH SYDNEY NSW 2059 Blackberry Biological Control RnD4Profit-14-01-040 Meat & Livestock Australia acknowledges the matching funds provided by the Australian Government to support the research and development detailed in this publication. This publication is published by Meat & Livestock Australia Limited ABN 39 081 678 364 (MLA). Care is taken to ensure the accuracy of the information contained in this publication. However MLA cannot accept responsibility for the accuracy or completeness of the information or opinions contained in the publication. You should make your own enquiries before making decisions concerning your interests. Reproduction in whole or in part of this publication is prohibited without prior written consent of MLA. B.WBC.0030 - Blackberry Plain English Summary European blackberry (Rubus fruticosus agg.) is an important invader of southern Australia pastures and natural ecosystems. The goal of this project was to explore new avenues for blackberry biocontrol. The project primarily focused on determining if the blackberry decline syndrome, observed in south-west Western Australia over the last 10 years, could be manipulated and developed as an effective and safe biocontrol tool. Results from glasshouse experiments revealed that Phytophthora pseudocryptogea, but not Phytophthora bilorbang, could kill or adversely affect different species of blackberry, when plants were exposed to fortnightly 72-h simulated flooding treatments. In host-specificity tests, P. pseudocryptogea did not significantly affect pasture species, but killed or considerably reduced growth of several native species, including many in the Acacia and Eucalyptus genera. -
Phytophthora Species and Riparian Alder Tree Damage in Western Oregon
AN ABSTRACT OF THE DISSERTATION OF Laura L. Sims for the degree of Doctor of Philosophy in Botany and Plant Pathology presented on February 13, 2014. Title: Phytophthora Species and Riparian Alder Tree Damage in Western Oregon Abstract approved: Everett M. Hansen The genus Phytophthora contains some of the most destructive pathogens of forest trees, including the most destructive pathogen of alder in recent times, Phytophthora alni. Alder trees were reported to be suffering from canopy dieback in riparian ecosystems in western Oregon, which prompted a survey of alder health and monitoring for P. alni. In 2010 surveys in western Oregon riparian ecosystems were initiated to gather baseline data on damage and on the Phytophthora species associated with alder. Damage was recorded and analyzed from transects containing alder trees with canopy dieback symptoms according to damage type: (1) pathogen, (2) insect, or (3) wound. Phytophthora species from western Oregon riparian ecosystems were systematically sampled, isolated, identified, stored and compared. Koch’s Postulates were evaluated for three key Phytophthora species recovered: P. alni, P. siskiyouensis and P. taxon Oaksoil, and alder disease in the western United States was described. Then, the ecological role of the most abundant Phytophthora species from streams was evaluated. The data indicated that many of the same agents reported causing damage to alder trees in the western United States were also damaging alder trees in western Oregon including the alder flea beetle, sawflies, flood debris, Septoria alnifolia, and Mycopappus alni. The most important damage correlated with canopy dieback was incidence of Phytophthora cankers, and isolation of Phytophthora siskiyouensis. -
New Species and Phylogeny of the Genus Phytophthora Xiao Yang
New Species and Phylogeny of the Genus Phytophthora Xiao Yang Dissertation submitted to the faculty of the Virginia Polytechnic Institute and State University in partial fulfillment of the requirements for the degree of Doctor of Philosophy In Plant Pathology, Physiology, and Weed Science Chuanxue Hong, Chair Anton B. Baudoin Warren E. Copes Erik L. Stromberg Brett M. Tyler December 9th, 2014 Blacksburg, VA Keywords: Phytophthora, aquatic species, novel species, morphology, taxonomy, phylogeny, systematics New Species and Phylogeny of the Genus Phytophthora Xiao Yang ABSTRACT The genus Phytophthora includes many agriculturally and ecologically important plant pathogens. Characterization of new Phytophthora species is the first and a most critical step to understanding their biology, ecology and economic importance. Six novel Phytophthora species recovered from irrigation systems at ornamental plant nurseries in Mississippi and Virginia were described based on morphological, physiological and molecular characters: 1. Phytophthora mississippiae sp. nov. produces a mix of non-papillate and semi- papillate sporangia, and catenulate hyphal swellings. It is a heterothallic species. All examined isolates of P. mississippiae are A1. When paired with A2 mating type testers, P. mississippiae produces ornamented oogonia and amphigynous antheridia. It is phylogenetically grouped in Phytophthora subclade 6b based on sequences of the rRNA internal transcribed spacer (ITS) region and the mitochondrially encoded cytochrome c oxidase 1 (cox 1) gene. 2. Phytophthora hydrogena sp. nov. is heterothallic. It produces non-caducous and non-papillate sporangia. It is characterized by frequently producing widening at the pedicel tip of sporangiophores or tapered sporangial based toward the point of attachment. This species is phylogenetically placed in a high-temperature tolerant cluster in Phytophthora clade 9. -
Of Phytophthora Cinnamomi (Rands) in Soil
SURVIVAL OF DIFFERENT LIFE STAGES OF PHYTOPHTHORA CINNAMOMI (RANDS) IN SOIL AND PLANT ROOTS UNDER MINE SITE CONDITIONS By JAMBA GYELTSHEN B.Sc. Agri. (Kerela Agrl. Uni., India); M.Sc. Crop Protection (Uni. of Reading, U.K.); Doctor of Plant Medicine (Uni. of Florida, U.S.A.) A thesis presented to Murdoch University for the degree of Doctor of Philosophy May 2, 2018 DECLARATION I declare that this thesis is my own account of research, and contains as its main content, work which has not previously been submitted for a degree at any tertiary education institution. Jamba Gyeltshen ii ACKNOWLEDGEMENTS I would like to express my deepest gratitude to my supervisors, Professor Giles Hardy, Dr. Treena Burgess, and Dr. Bill Dunstan for their profound inspiration, guidance, and support during the course of this study. Without that kind of support, it would not have been possible to complete this work on time. Their accessibility at all times and the wholehearted willingness to help was a humbling experience. Thanks are also due to Dr. Navid Moheimani (Supervisory Committee Chair) for his time and advice. I am particularly grateful for the whole-hearted support received from Diane White and Briony Williams in the laboratory, Dr. Mike Calver and Chris Shaw for statistical analysis, and all my graduate fellow-mates for various other support and cooperation. My special thanks to my wife, Kunzang Chhoden; daughters, Thinley Yangzom and Jamba Chhoden; and son, Tashi Tenzin, for their moral support, encouragement, and sacrifices. I also wish to thank Kuenga Nidup for the help rendered with photoshop to put together the pictures and graphs. -
The Phytophthora Species Assemblage and Diversity in Riparian Alder Ecosystems of Western Oregon, USA
The Phytophthora species assemblage and diversity in riparian alder ecosystems of western Oregon, USA Sims, L. L., Sutton, W., Reeser, P., & Hansen, E. M. (2015). The Phytophthora species assemblage and diversity in riparian alder ecosystems of western Oregon, USA. Mycologia, 107(5), 889-902. doi:10.3852/14-255 10.3852/14-255 Mycological Society of America Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Mycologia, 107(5), 2015, pp. 889–902. DOI: 10.3852/14-255 # 2015 by The Mycological Society of America, Lawrence, KS 66044-8897 Issued 13 OCTOBER 2015 The Phytophthora species assemblage and diversity in riparian alder ecosystems of western Oregon, USA Laura Lee Sims1 (Alnus rhombifolia Nutt.) is less frequent in the same Oregon State University, Department of Botany and riparian ecosystems (Johnson 1968). In 2009 an Plant Pathology, Corvallis, Oregon 97330, and unusual amount of alder mortality was observed University of California, Berkeley, Department of along the Smith River in Douglas County, Oregon. Environmental Science, Policy and Management, Berkeley, California 94704 Alder trees with Phytophthora-type cankers and canopy dieback were reported and a preliminary survey of Wendy Sutton above ground symptoms suggested the dieback might Paul Reeser be more widespread (Sims et al. 2014). In Europe Everett M Hansen (Gibbs et al. 1999, Streito et al. 2002, Webber et al. Oregon State University, Department of Botany and 2004), in Australia (Smith et al. 2006) and in the Plant Pathology, Corvallis, Oregon 97330 United States (Rooney-Latham et al. 2007) alarming new diseases of alder caused by species of Phy- tophthora recently had been reported. -
Multiple Phytophthora Species Associated with a Single Riparian Ecosystem in South Africa
Mycologia, 107(5), 2015, pp. 915–925. DOI: 10.3852/13-380 # 2015 by The Mycological Society of America, Lawrence, KS 66044-8897 Multiple Phytophthora species associated with a single riparian ecosystem in South Africa Jan H. Nagel1 caused by P. alni, is much more common in trees that Bernard Slippers are within 1 m of a river (Gibbs et al. 1999). Riparian Michael J. Wingfield alder stands are more likely to become diseased if Department of Genetics, Forestry and Agricultural they share catchment areas with diseased stands (Jung Biotechnology Institute (FABI), University of Pretoria, and Blaschke 2004). When P. lateralis, which causes Pretoria 0001, South Africa a lethal disease of Port Orford cedar (Chamaecyparis Marieka Gryzenhout lawsoniana) in Oregon and California, is present in Department of Plant Sciences, University of the Free a stream C. lawsoniana trees with roots exposed to the State, Bloemfontein 9300, South Africa river die within a few years (Hansen et al. 2000). Likewise Phytophthora diseases in agricultural and horticultural nurseries are closely linked to the Abstract: The diversity of Phytophthora spp. in rivers presence of Phytophthora spp. present in irrigation and riparian ecosystems has received considerable water (Oudemans 1999, Yamak et al. 2002, Gevens et international attention, although little such research al. 2007, Werres et al. 2007, Ghimire et al. 2009, has been conducted in South Africa. This study Orlikowski et al. 2009). Although the incidence of determined the diversity of Phytophthora spp. within sudden oak death caused by P. ramorum appears a single river in Gauteng province of South Africa. unlinked to rivers and streams (Davidson and Shaw Samples were collected over 1 y including biweekly 2003), riparian systems play an important role in early river baiting with Rhododendron indicum leaves.