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A Visualization Quality Evaluation Method for Multiple Sequence Alignments

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A Visualization Quality Evaluation Method for Multiple Sequence Alignments 2011 5th International Conference on Bioinformatics and Biomedical Engineering (iCBBE 2011) Wuhan, China 10 - 12 May 2011 Pages 1 - 867 IEEE Catalog Number: CFP1129C-PRT ISBN: 978-1-4244-5088-6 1/7 TABLE OF CONTENTS ALGORITHMS, MODELS, SOFTWARE AND TOOLS IN BIOINFORMATICS: A Visualization Quality Evaluation Method for Multiple Sequence Alignments ............................................................1 Hongbin Lee, Bo Wang, Xiaoming Wu, Yonggang Liu, Wei Gao, Huili Li, Xu Wang, Feng He A New Promoter Recognition Method Based On Features Optimal Selection.................................................................5 Lan Tao, Huakui Chen, Yanmeng Xu, Zexuan Zhu A Center Closeness Algorithm For The Analyses Of Gene Expression Data ...................................................................9 Huakun Wang, Lixin Feng, Zhou Ying, Zhang Xu, Zhenzhen Wang A Novel Method For Lysine Acetylation Sites Prediction ................................................................................................ 11 Yongchun Gao, Wei Chen Weighted Maximum Margin Criterion Method: Application To Proteomic Peptide Profile ....................................... 15 Xiao Li Yang, Qiong He, Si Ya Yang, Li Liu Ectopic Expression Of Tim-3 Induces Tumor-Specific Antitumor Immunity................................................................ 19 Osama A. O. Elhag, Xiaojing Hu, Weiying Zhang, Li Xiong, Yongze Yuan, Lingfeng Deng, Deli Liu, Yingle Liu, Hui Geng Small-World Network Properties Of Protein Complexes: Node Centrality And Community Structure .................... 23 Gouchol Pok, Ho Sun Shon, Kyung-Ah Kim, Ken Ho Ryu A Solution To Integrate Data For Phylogenetic Research................................................................................................ 27 Yanping Gao, Xing He, Yong Liu, Yanping Gao, Zhen Meng, Xing He, Yong Liu, Yunchun Zhou, Jianhui Li, Yunchun Zhou , Jianhui Liu Application Of Improved Fuzzy C-Means Clustering In Cell Image Segmentation...................................................... 31 Peng Ren, Shangliang Hu, Huiping Zhu, Ying Cao Design And Implementation Of Multimedia Control System Based On Bluetooth And Electrooculogram (EOG) .................................................................................................................................................... 35 Lian Li, Xiaopei Wu Proteasomes Cleavage Sites Prediction By Using Rough Set Theory.............................................................................. 39 Xinghuo Ye, Juan Liu Protein Biological Function Clustering With Go And Ko................................................................................................ 43 Meichen Zhou, Fei Zhu Named Entity Recognition From Biomedical Text Using Svm ........................................................................................ 47 Zhenfei Ju, Jian Wang, Fei Zhu Predicting The Risk Type Of Human Papillomaviruses Based On Sequence-Derived Features.................................. 51 Wang Pu, Xiao Xuan Genomedesign: A Bioinformatics Program For Genome And Multiplex Gene Synthesis ............................................ 55 Chun Yew Cheong, Mo-Huang Li, Rick Siow Mong Goh Dynamics And Distribution Of Chlorophyll-A Off The Changjiang Estuary In Late Summer ................................... 59 Jun Lin, Jianrong Zhu, Jing Zhang Integrated Analysis Of Gene Expression And Gene Copy Number For Gene Shaving Based On ICA Approach .................................................................................................................................................... 63 Yu-Ping Wang Microarray Image Gridding By Using Self-Organizing Maps......................................................................................... 67 David Q. Moena Genomic Islands Analysis Of Three Actinobacillus Pleuropneumoniae Strains By Comparative Genomic Methods ................................................................................................................................................................ 71 Ren-Feng Li, Xiang-Qin Tian, Jin-Qing Jiang, Xue-Bin Li, San-Hu Wang Cell Culture Microfluidic Biochips: Experimental Throughput Maximization ............................................................. 75 Wajid Hassan Minhass, Paul Pop, Jan Madsen, Mette Hemmingsen, Peder Skafte-Pedersen, Martin Dufva Numerical Simulation Of The River Plumes In The Bohai Sea....................................................................................... 81 Hao Liu, Wen-Shan Xu, Ming-Xin Dai, Shi-Tao Peng Homology Modeling And Expression Analysis Of Sterol 14alpha-Demethylase From Ustilago Maydis..................... 85 Jianhua Zhang, Shuxiang Li, Rui Han, Qian Li, Lingfu Deng, Jin-Long Wang, Yongze Yuan, Deli Liu Optimization Of Tryptophan Enantiomers Separation By Capillary Electrophoresis With Cyclodextrins ....................................................................................................................................................................... 89 Yugui Tao, Qijin Wang, Qiang Wang, Hao Gu, Changyun Qin A Comparison Of Power Among Analytical Methods Of Gene-Environment Interactions.......................................... 93 Jie Wei, Lianguo Fu, Xuesen Wu Median-Joining Network Analysis Of Phylogeny Of Goat Breeds From South China ................................................. 96 Xin Cai, Tserangdonko Mipam Research On ARMA Model In The Prediction Of Prevalent Trend Of Rabies ........................................................... 100 Yajun Hou, Xinyi Gao A Novel Strategy For Identification Of Biosynthesis Pathway Of Emodin In Aspergillus Ochraceus By Stable-Isotope Labeling And HPLC-ESI/APCI-MS....................................................................................................... 104 Pei Qin, Ping Lv, Yuan Zhen Li, Yi Wei Tang, Yu Wang A Growing Model For Biological Networks On Recombination And Divergence Principle ....................................... 107 Xueying Xie, Xin Li Subcellular Phenotype Images Classification By Mlp Ensembles With Random Linear Oracle................................ 111 Bai-Ling Zhang, Guoxia Han Post-Treatment Of Cotton Fabrics With PVA (Polyvinyl Alcohol) Nanofibers Using Electrospinning Process ................................................................................................................................................................................ 115 Wei Nie, Deng-Guang Yu, Yuan-Qing Lin, Yan Li, Christopher J. Branford-White, Li-Min Zhu Quantification Of Overlapping Components In Medicine By Using Partial Least Squares From The Capillary Electrophoresis.................................................................................................................................................. 118 Suya Gao, Tao Fan, Lining Yang, Suya Gao, Hua Li Simulation Of Ultrasound Vibrometry Using Kevin-Voigt's Model ............................................................................. 122 Ke Chen, Jiangli Lin, Yuanwen Zou, Guangfu Yin, Yi Zheng Application Of Reversal Operation In Optimizing Synthesis Strategy For DNA Microarrays .................................. 126 Fei-Peng Yang, Yan-Qi Wu, Shan Lin, Shu-Jie Zhang, Yu-Jiao Huang, Xiao-Min Zhou, Zheng-Chun Liu Accelerating Smith-Waterman On Heterogeneous CPU-GPU Systems ....................................................................... 129 Jaideep Singh, Ipseeta Aruni Research Of Quick Developing Model In The Medical Clinical Data Management System....................................... 133 Xiufeng Liu, Jiangning Zhao, Jisheng Huang, Xiuju Zhan, Fukang Long, Chaofan Yu ABCC8 And Type 2 Diabetes: A Global Meta-Analysis................................................................................................. 137 Yi Lv, Lulu Cui, M. A. S. Dehwah, Meng Gao, Jie Wen, Qingyang Huang Heterogeneous Patient Information Acquisition And Normalization For Shareable, Executable Clinical Decision Support System..................................................................................................................................... 141 Xiaorong Wu, Shan Nan, Xudong Lu, Huilong Duan The Attachment To Maternal Womb: The Initial Attachment Of The Infant............................................................. 145 Chuanhua Gu Statistical Analysis Of Gas Chromatography Retention Index Database ..................................................................... 148 Yu-Ting Chen, Jun Zhang, Xiang Zhang, Seongho Kim Comparison Of Spectral Similarity Measures For Compound Identification.............................................................. 152 Imhoi Koo, Xiang Zhang, Seongho Kim Multi-Label Learning For Prediction Of Subcellular Localization Of Human Proteins............................................. 156 Zhicheng Wu, Xuan Xiao GENE, DNA AND PROTEIN: Production, Purification And Characterization Of Lipase From Serratia Sp. Sl-11 ................................................... 160 Jianrong Liang, Yu Deng, Haiming Jing, Lili Cheng, Xin Zhao, Yunming Tang Class Conditional Distance Metric For 3d Protein Structure Classification ................................................................ 164 Jingyan Wang, Yongping Li, Ying Zhang, Ning Tang, Chao Wang Construction Of cDNA Library And Preliminary Screening Of Immune-Related Genes In Cyclina Sinensis ............................................................................................................................................................................... 168 Baoping Pan, Liyan Zhang, Weiwei
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