Unix Philosophy
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UNIX Cheat Sheet – Sarah Medland Help on Any Unix Command List a Directory Change to Directory Make a New Directory Remove A
THE 2013 INTERNATIONAL WORKSHOP ON STATISTICAL METHODOLOGY FOR HUMAN GENOMIC STUDIES UNIX cheat sheet – Sarah Medland Help on any Unix command man {command} Type man ls to read the manual for the ls command. which {command} Find out where a program is installed whatis {command} Give short description of command. List a directory ls {path} ls -l {path} Long listing, with date, size and permisions. ls -R {path} Recursive listing, with all subdirs. Change to directory cd {dirname} There must be a space between. cd ~ Go back to home directory, useful if you're lost. cd .. Go back one directory. Make a new directory mkdir {dirname} Remove a directory/file rmdir {dirname} Only works if {dirname} is empty. rm {filespec} ? and * wildcards work like DOS should. "?" is any character; "*" is any string of characters. Print working directory pwd Show where you are as full path. Copy a file or directory cp {file1} {file2} cp -r {dir1} {dir2} Recursive, copy directory and all subdirs. cat {newfile} >> {oldfile} Append newfile to end of oldfile. Move (or rename) a file mv {oldfile} {newfile} Moving a file and renaming it are the same thing. View a text file more {filename} View file one screen at a time. less {filename} Like more , with extra features. cat {filename} View file, but it scrolls. page {filename} Very handy with ncftp . nano {filename} Use text editor. head {filename} show first 10 lines tail {filename} show last 10 lines Compare two files diff {file1} {file2} Show the differences. sdiff {file1} {file2} Show files side by side. Other text commands grep '{pattern}' {file} Find regular expression in file. -
It's Complicated but It's Probably Already Booting Your Computer
FAQ SYSTEMD SYSTEMD It’s complicated but it’s probably already booting your computer. dynamically connect to your network, a runlevel of 1 for a single-user mode, GRAHAM MORRISON while syslogd pools all the system runlevel 3 for the same command messages together to create a log of prompt we described earlier, and Surely the ‘d’ in Systemd is everything important. Another daemon, runlevel 5 to launch a graphical a typo? though it lacks the ‘d’, is init – famous environment. Changing this for your No –it’s a form of Unix notation for being the first process that runs on next boot often involved editing the used to signify a daemon. your system. /etc/inittab file, and you’d soon get used to manually starting and stopping You mean like those little Isn’t init used to switch your own services simply by executing devils inhabiting Dante’s between the command-line the scripts you found. underworld? and the graphical desktop? There is a link in that Unix usage For many of us, yes. This was the You seem to be using the past of the term daemon supposedly main way of going from the tense for all this talk about the comes from Greek mythology, where desktop to a command line and back init daemon… daemons invisibly wove their magic again without trying to figure out which That’s because the and benign influence. The word is today processes to kill or start manually. aforementioned Systemd wants more commonly spelt ‘demon’, which Typing init 3 would typically close any to put init in the past. -
HEP Computing Part I Intro to UNIX/LINUX Adrian Bevan
HEP Computing Part I Intro to UNIX/LINUX Adrian Bevan Lectures 1,2,3 [email protected] 1 Lecture 1 • Files and directories. • Introduce a number of simple UNIX commands for manipulation of files and directories. • communicating with remote machines [email protected] 2 What is LINUX • LINUX is the operating system (OS) kernel. • Sitting on top of the LINUX OS are a lot of utilities that help you do stuff. • You get a ‘LINUX distribution’ installed on your desktop/laptop. This is a sloppy way of saying you get the OS bundled with lots of useful utilities/applications. • Use LINUX to mean anything from the OS to the distribution we are using. • UNIX is an operating system that is very similar to LINUX (same command names, sometimes slightly different functionalities of commands etc). – There are usually enough subtle differences between LINUX and UNIX versions to keep you on your toes (e.g. Solaris and LINUX) when running applications on multiple platforms …be mindful of this if you use other UNIX flavours. – Mac OS X is based on a UNIX distribution. [email protected] 3 Accessing a machine • You need a user account you should all have one by now • can then log in at the terminal (i.e. sit in front of a machine and type in your user name and password to log in to it). • you can also log in remotely to a machine somewhere else RAL SLAC CERN London FNAL in2p3 [email protected] 4 The command line • A user interfaces with Linux by typing commands into a shell. -
Getting to Grips with Unix and the Linux Family
Getting to grips with Unix and the Linux family David Chiappini, Giulio Pasqualetti, Tommaso Redaelli Torino, International Conference of Physics Students August 10, 2017 According to the booklet At this end of this session, you can expect: • To have an overview of the history of computer science • To understand the general functioning and similarities of Unix-like systems • To be able to distinguish the features of different Linux distributions • To be able to use basic Linux commands • To know how to build your own operating system • To hack the NSA • To produce the worst software bug EVER According to the booklet update At this end of this session, you can expect: • To have an overview of the history of computer science • To understand the general functioning and similarities of Unix-like systems • To be able to distinguish the features of different Linux distributions • To be able to use basic Linux commands • To know how to build your own operating system • To hack the NSA • To produce the worst software bug EVER A first data analysis with the shell, sed & awk an interactive workshop 1 at the beginning, there was UNIX... 2 ...then there was GNU 3 getting hands dirty common commands wait till you see piping 4 regular expressions 5 sed 6 awk 7 challenge time What's UNIX • Bell Labs was a really cool place to be in the 60s-70s • UNIX was a OS developed by Bell labs • they used C, which was also developed there • UNIX became the de facto standard on how to make an OS UNIX Philosophy • Write programs that do one thing and do it well. -
Useful Tai Ls Dino
SCIENCE & NATURE Useful Tails Materials Pictures of a possum, horse, lizard, rattlesnake, peacock, fish, bird, and beaver What to do 1. Display the animal pictures so the children can see them. 2. Say the following sentences. Ask the children to guess the animal by the usefulness of its tail. I use my tail for hanging upside down. (possum) I use my tail as a fly swatter. (horse) When my tail breaks off, I grow a new one. (lizard) I shake my noisy tail when I am about to strike. (rattlesnake) My tail opens like a beautiful fan. (peacock) I use my tail as a propeller. I cannot swim without it. (fish) I can’t fly without my tail. (bird) I use my powerful tail for building. (beaver) More to do Ask the children if they can name other animals that have tails. Ask them how these animals’Downloaded tails might by [email protected] useful. from Games: Cut out the tailsProFilePlanner.com of each of the animals. Encourage the children to pin the tails on the pictures (like “Pin the Tail on the Donkey”). Dotti Enderle, Richmond, TX Dino Dig Materials Plastic or rubber dinosaurs or bones Sand Wide-tip, medium-sized paintbrushes Plastic sand shovels Small plastic buckets Clipboards Paper Pencil or pens 508 The GIANT Encyclopedia of Preschool Activities for Four-Year-Olds Downloaded by [email protected] from ProFilePlanner.com SCIENCE & NATURE What to do 1. Beforehand, hide plastic or rubber dinosaurs or bones in the sand. 2. Give each child a paintbrush, shovel, and bucket. 3. -
Shell Variables
Shell Using the command line Orna Agmon ladypine at vipe.technion.ac.il Haifux Shell – p. 1/55 TOC Various shells Customizing the shell getting help and information Combining simple and useful commands output redirection lists of commands job control environment variables Remote shell textual editors textual clients references Shell – p. 2/55 What is the shell? The shell is the wrapper around the system: a communication means between the user and the system The shell is the manner in which the user can interact with the system through the terminal. The shell is also a script interpreter. The simplest script is a bunch of shell commands. Shell scripts are used in order to boot the system. The user can also write and execute shell scripts. Shell – p. 3/55 Shell - which shell? There are several kinds of shells. For example, bash (Bourne Again Shell), csh, tcsh, zsh, ksh (Korn Shell). The most important shell is bash, since it is available on almost every free Unix system. The Linux system scripts use bash. The default shell for the user is set in the /etc/passwd file. Here is a line out of this file for example: dana:x:500:500:Dana,,,:/home/dana:/bin/bash This line means that user dana uses bash (located on the system at /bin/bash) as her default shell. Shell – p. 4/55 Starting to work in another shell If Dana wishes to temporarily use another shell, she can simply call this shell from the command line: [dana@granada ˜]$ bash dana@granada:˜$ #In bash now dana@granada:˜$ exit [dana@granada ˜]$ bash dana@granada:˜$ #In bash now, going to hit ctrl D dana@granada:˜$ exit [dana@granada ˜]$ #In original shell now Shell – p. -
What Is UNIX? the Directory Structure Basic Commands Find
What is UNIX? UNIX is an operating system like Windows on our computers. By operating system, we mean the suite of programs which make the computer work. It is a stable, multi-user, multi-tasking system for servers, desktops and laptops. The Directory Structure All the files are grouped together in the directory structure. The file-system is arranged in a hierarchical structure, like an inverted tree. The top of the hierarchy is traditionally called root (written as a slash / ) Basic commands When you first login, your current working directory is your home directory. In UNIX (.) means the current directory and (..) means the parent of the current directory. find command The find command is used to locate files on a Unix or Linux system. find will search any set of directories you specify for files that match the supplied search criteria. The syntax looks like this: find where-to-look criteria what-to-do All arguments to find are optional, and there are defaults for all parts. where-to-look defaults to . (that is, the current working directory), criteria defaults to none (that is, select all files), and what-to-do (known as the find action) defaults to ‑print (that is, display the names of found files to standard output). Examples: find . –name *.txt (finds all the files ending with txt in current directory and subdirectories) find . -mtime 1 (find all the files modified exact 1 day) find . -mtime -1 (find all the files modified less than 1 day) find . -mtime +1 (find all the files modified more than 1 day) find . -
A Highly Configurable High-Level Synthesis Functional Pattern Library
electronics Article A Highly Configurable High-Level Synthesis Functional Pattern Library Lan Huang 1,2,‡, Teng Gao 1,‡, Dalin Li 1,†, Zihao Wang 1 and Kangping Wang 1,2,* 1 College of Computer Science and Technology, Jilin University, Changchun 130012, China; [email protected] (L.H.); [email protected] (T.G.); [email protected] (D.L.); [email protected] (Z.W.) 2 Key Laboratory of Symbolic Computation and Knowledge Engineering, Jilin University, Changchun 130012, China * Correspondence: [email protected] † Current address: Zhuhai Laboratory of Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, Department of Computer Science and Technology, Zhuhai College of Jilin University, Zhuhai 519041, China. ‡ These authors contributed equally to this work. Abstract: FPGA has recently played an increasingly important role in heterogeneous computing, but Register Transfer Level design flows are not only inefficient in design, but also require designers to be familiar with the circuit architecture. High-level synthesis (HLS) allows developers to design FPGA circuits more efficiently with a more familiar programming language, a higher level of abstraction, and automatic adaptation of timing constraints. When using HLS tools, such as Xilinx Vivado HLS, specific design patterns and techniques are required in order to create high-performance circuits. Moreover, designing efficient concurrency and data flow structures requires a deep understanding of the hardware, imposing more learning costs on programmers. In this paper, we propose a set of functional patterns libraries based on the MapReduce model, implemented by C++ templates, Citation: Huang, L.; Gao,T.; Li, D.; which can quickly implement high-performance parallel pipelined computing models on FPGA with Wang, Z.; Wang, K. -
Useful Commands in Linux and Other Tools for Quality Control
Useful commands in Linux and other tools for quality control Ignacio Aguilar INIA Uruguay 05-2018 Unix Basic Commands pwd show working directory ls list files in working directory ll as before but with more information mkdir d make a directory d cd d change to directory d Copy and moving commands To copy file cp /home/user/is . To copy file directory cp –r /home/folder . to move file aa into bb in folder test mv aa ./test/bb To delete rm yy delete the file yy rm –r xx delete the folder xx Redirections & pipe Redirection useful to read/write from file !! aa < bb program aa reads from file bb blupf90 < in aa > bb program aa write in file bb blupf90 < in > log Redirections & pipe “|” similar to redirection but instead to write to a file, passes content as input to other command tee copy standard input to standard output and save in a file echo copy stream to standard output Example: program blupf90 reads name of parameter file and writes output in terminal and in file log echo par.b90 | blupf90 | tee blup.log Other popular commands head file print first 10 lines list file page-by-page tail file print last 10 lines less file list file line-by-line or page-by-page wc –l file count lines grep text file find lines that contains text cat file1 fiel2 concatenate files sort sort file cut cuts specific columns join join lines of two files on specific columns paste paste lines of two file expand replace TAB with spaces uniq retain unique lines on a sorted file head / tail $ head pedigree.txt 1 0 0 2 0 0 3 0 0 4 0 0 5 0 0 6 0 0 7 0 0 8 0 0 9 0 0 10 -
Bash Guide for Beginners
Bash Guide for Beginners Machtelt Garrels Garrels BVBA <tille wants no spam _at_ garrels dot be> Version 1.11 Last updated 20081227 Edition Bash Guide for Beginners Table of Contents Introduction.........................................................................................................................................................1 1. Why this guide?...................................................................................................................................1 2. Who should read this book?.................................................................................................................1 3. New versions, translations and availability.........................................................................................2 4. Revision History..................................................................................................................................2 5. Contributions.......................................................................................................................................3 6. Feedback..............................................................................................................................................3 7. Copyright information.........................................................................................................................3 8. What do you need?...............................................................................................................................4 9. Conventions used in this -
Official Standard of the Portuguese Water Dog General Appearance
Page 1 of 3 Official Standard of the Portuguese Water Dog General Appearance: Known for centuries along Portugal's coast, this seafaring breed was prized by fishermen for a spirited, yet obedient nature, and a robust, medium build that allowed for a full day's work in and out of the water. The Portuguese Water Dog is a swimmer and diver of exceptional ability and stamina, who aided his master at sea by retrieving broken nets, herding schools of fish, and carrying messages between boats and to shore. He is a loyal companion and alert guard. This highly intelligent utilitarian breed is distinguished by two coat types, either curly or wavy; an impressive head of considerable breadth and well proportioned mass; a ruggedly built, well-knit body; and a powerful, thickly based tail, carried gallantly or used purposefully as a rudder. The Portuguese Water Dog provides an indelible impression of strength, spirit, and soundness. Size, Proportion, Substance: Size - Height at the withers - Males, 20 to 23 inches. The ideal is 22 inches. Females, 17 to 21 inches. The ideal is 19 inches. Weight - For males, 42 to 60 pounds; for females, 35 to 50 pounds. Proportion - Off square; slightly longer than tall when measured from prosternum to rearmost point of the buttocks, and from withers to ground. Substance - Strong, substantial bone; well developed, neither refined nor coarse, and a solidly built, muscular body. Head: An essential characteristic; distinctively large, well proportioned and with exceptional breadth of topskull. Expression - Steady, penetrating, and attentive. Eyes - Medium in size; set well apart, and a bit obliquely. -
If Data Is Confidential and Available but Altered Decryption of Altered Data Usually Gives Garbage Exception: Electronic-Codeboo
38 40 If Data is Confidential and Available but Altered Encryption • do not use ECB–Mode • use CBC– or CTR–mode (recommendation Schneier/Ferguson) • use AES or one of the finalists – Twofish (Schneier, Ferguson, Kelsey, Whiting, Wagner, Hall) decryption of altered data usually gives garbage – Serpent (Anderson, Biham, Knudsen) – MARS (Coppersmith et al., IBM) exception: electronic-codebook-mode (ECB) (uses independent blocks) – RC6 (Rivest, patented by RSA) 39 41 ECB-Mode Encrypted Penguin If Data is Non-Alterable and Confidential but not Available ,,Your message with authenticator 08931281763e1de003e5f930c449bf791c9f0db6 encryption is block by block has been received, but unfortunately the server is down. ❀ every block gets another color Your mail-service will never be accessible.” Example: lavabit.com, Snowden’s e-Mail-Provider 42 44 Authorization: Who is Allowed to Do All This? Problem: Person/Process/Role ⇐⇒ String (2) How to link a person to a string? • Person knows something (password, secret cryptographic key). • Person has something (token, USB–key, chipcard). Authorized entities only. • Person is something (biometrics, fingerprint etc.). Only Bob is allowed to enter here. We have to identify persons, processes and their roles. 43 45 Problem: Person/Process/Role ⇐⇒ String (1) Proof of Identity is Called Authentication Person identified by picture String identified by equality relation. 46 48 Proof of Identity: Links Person to a String Third party guarantees real identity. Has something: ID–card. 47 49 Proof of True Source is Called Authenticity