The Role of Δ Subunit-Containing Γ-Aminobutyric Acid Type a Receptors

Total Page:16

File Type:pdf, Size:1020Kb

The Role of Δ Subunit-Containing Γ-Aminobutyric Acid Type a Receptors THE ROLE OF δ SUBUNIT-CONTAINING γ-AMINOBUTYRIC ACID TYPE A RECEPTORS IN MEMORY AND SYNAPTIC PLASTICITY by Paul David Whissell A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Institute of Medical Science University of Toronto © Copyright by Paul Whissell, 2014 Paul Whissell The role of δ subunit-containing γ-aminobutyric acid type A receptors in memory and synaptic plasticity Doctor of Philosophy, Institute of Medical Science, University of Toronto, 2014 Abstract Background: Extrasynaptic γ-aminobutyric acid type A receptors that contain the δ subunit (δGABAA receptors) are highly expressed in the dentate gyrus (DG) of the hippocampus, where they generate a tonic conductance that regulates activity. GABAA receptor-dependent signaling regulates memory and neurogenesis in the adult DG; however, the role of δGABAA receptors in these processes is unclear. Accordingly, it was postulated that δGABAA receptors regulate memory and neurogenesis in the DG. Methods: A combination of genetic and pharmacologic techniques was employed. Memory in wild-type (WT) and δ subunit null (Gabrd–/–) mice was assessed using object-place recognition, novel object recognition, contextual discrimination, fear conditioning, fear extinction and water maze tasks. Long-term potentiation, a molecular correlate of memory, was examined using the in vitro hippocampal slice preparation. To ascertain the effects of enhanced δGABAA receptor activity, the receptor-preferring agonist 4,5,6,7- tetrahydroisoxazolo[5,4-c]pyridin-3-ol (THIP; 4 mg/kg) was applied either as a pre-treatment (2 weeks prior to testing) or an acute treatment (30 min prior to testing). Results: Gabrd–/– mice exhibited impaired object-place recognition, novel object recognition and contextual discrimination relative to WT mice. Further, Gabrd–/– mice exhibited impaired fear extinction, although fear acquisition was enhanced. Pre-treatment with THIP improved memory in WT but not Gabrd–/– mice. Consistent with these behavioural findings, ii neurogenesis was impaired in Gabrd–/– mice and enhanced in WT mice by pre-treatment with THIP. In contrast to the beneficial effects of pre-treatment with THIP, acute THIP impaired memory and long-term potentiation in WT mice. Conclusions: These results indicate that δGABAA receptors promote memory and neurogenesis under baseline conditions. These processes may also be enhanced by long- term activation of δGABAA receptors with selective drugs, provided that these drug are absent during testing. Further, these findings show that acute activation of δGABAA receptors impairs memory and long-term potentiation. Implications: δGABAA receptors may be a therapeutic target for the long-term treatment of memory dysfunction during aging, injury and disease. These findings also have clinical implications, as δGABAA receptors are molecular targets for therapeutic and recreational drugs. The acute amnestic effects of these compounds may be partially explained by δGABAA receptor activity. iii Acknowledgements First and foremost, I would like to thank my supervisor and mentor, Dr. Beverley Orser, for her inspiration, dedication, integrity and patience throughout this auspicious journey. I am grateful to her for setting up an environment where success was not only possible, but also tremendously enjoyable. To all post-doctoral researchers and research associates who came through the lab (including Dian-Shi, Xuanamao, Hongbin, Michael, Sinziana, and Antonello) I would like to extend my thanks for their expertise, advice and uncompromising standards. A special thanks goes to Dian-Shi for doing it all with a smile. I am also very grateful to all Orser lab students (brothers- and sisters-in-arms). I would like to thank Loren, Rob, Agnes, Irene, Anine, Will and Dave for making research fun, thought-provoking and productive. I would like to personally thank Irene for her patience in enduring a painful saga of experiments that never seemed to end. To the Physiology student community, I'm grateful for the support, lunch room timbits and all the journal club cookies. To the summer students (Erica, Zeenia, Eric, Michael, Dave, Bonnie and Jane) I would like to say thanks for reminding me why I got into research. I'd like to thank the technical staff (Ella and Yao-Fang) as well as my committee members (Dr. Wojtowicz, Dr. Zhang, Dr. Feng, Dr. Yeomans, Dr. Frankland, Dr. Osborne and Dr. Smith) for their support and input. I'm particularly indebted to Dr. Wojtowicz and Shira Rosenzweig for the opportunity to be involved in such an exciting collaboration. Finally, I'd like to thank my girlfriend Heather, my family (4 brothers, 1 sister, 2 nieces and 1 nephew) and my mother, Dr. Cynthia Whissell, for being awesome. iv List of Contributors The majority of Chapter 4 was derived from the article, "δGABAA receptors promote memory and neurogenesis" in the journal Annals of Neurology (Whissell et al. 2013), which was the work of several investigators. I served as co-first author of this paper along with Dr. Shira Rosenzweig. Other authors include Irene Lecker (Ph.D. candidate), Dr. Dian-Shi Wang, Dr. Beverley Orser and Dr. J. Martin Wojtowicz. Irene Lecker also contributed to several behavioural experiments (Figure 4.6, Figure 4.7) by handling animals and performing drug injections. Dr. Rosenzweig collected and analyzed all data relating to neurogenesis (Figure 4.8, Figure 4.9) with the assistance of technician Yao-Fang Tan. Portions of this data have been presented previously (Rosenzweig 2011) but have not been published. I contributed to the presentation and interpretation of this data for the paper. Finally, Dr. Wang, Dr. Orser and Dr. Wojtowicz contributed to the writing of the paper. Technician Ella Czerwinska (M. Sc.) managed the animal population used in this study. The majority of Chapter 5 was derived from the article, "Acute activation of δGABAA receptors impairs memory and synaptic plasticity in the hippocampus" that is currently under review for publication in Frontiers in Neural Circuits. I served as first author of this paper. Other authors include Dave Eng (M.Sc.), Irene Lecker, Dr. Loren Martin, Dr. Wang and Dr. Orser. Dave Eng performed several behavioural experiments (Figure 5.1C, Figure 5.2B and Figure 5.2C) which are partly documented in his thesis (Eng 2008) but have not been published. I contributed to the collection, analysis and presentation of this data. Irene Lecker contributed to behavioural experiments by handling animals and performing drug injections (Figure 5.3) while the remaining authors contributed to writing. Technician Ella Czerwinska again managed the animal population used. v Table of Contents Abstract ..................................................................................................................................... ii Acknowledgements .................................................................................................................. iv List of Contributors .................................................................................................................... v Table of Contents .................................................................................................................... vi List of Figures .......................................................................................................................... ix List of Tables ...........................................................................................................................xii List of Abbreviations................................................................................................................ xiii Chapter 1. Thesis Structure ...................................................................................................... 1 1.1. Chapter Structure ....................................................................................................... 1 1.2. Overview ..................................................................................................................... 1 1.3. Hypothesis .................................................................................................................. 4 1.4. Specific aims............................................................................................................... 4 1.5. Results ........................................................................................................................ 4 1.6. Conclusions ................................................................................................................ 5 1.7. Implications ................................................................................................................. 5 Chapter 2. Introduction ............................................................................................................. 7 2.1. Overview ..................................................................................................................... 7 2.2. GABA .......................................................................................................................... 7 2.3. GABAA receptors ...................................................................................................... 11 2.4. GABA activation of GABAA receptor channels .......................................................... 34 vi 2.5. The hippocampal formation and memory ................................................................. 43 2.6. Anatomy of the hippocampal formation ...................................................................
Recommended publications
  • Cognition and Steroidogenesis in the Rhesus Macaque
    Cognition and Steroidogenesis in the Rhesus Macaque Krystina G Sorwell A DISSERTATION Presented to the Department of Behavioral Neuroscience and the Oregon Health & Science University School of Medicine in partial fulfillment of the requirements for the degree of Doctor of Philosophy November 2013 School of Medicine Oregon Health & Science University CERTIFICATE OF APPROVAL This is to certify that the PhD dissertation of Krystina Gerette Sorwell has been approved Henryk Urbanski Mentor/Advisor Steven Kohama Member Kathleen Grant Member Cynthia Bethea Member Deb Finn Member 1 For Lily 2 TABLE OF CONTENTS Acknowledgments ......................................................................................................................................................... 4 List of Figures and Tables ............................................................................................................................................. 7 List of Abbreviations ................................................................................................................................................... 10 Abstract........................................................................................................................................................................ 13 Introduction ................................................................................................................................................................. 15 Part A: Central steroidogenesis and cognition ............................................................................................................
    [Show full text]
  • Neonatal Clonazepam Administration Induced Long-Lasting Changes in GABAA and GABAB Receptors
    International Journal of Molecular Sciences Article Neonatal Clonazepam Administration Induced Long-Lasting Changes in GABAA and GABAB Receptors Hana Kubová 1,* , Zde ˇnkaBendová 2,3 , Simona Moravcová 2,3 , Dominika Paˇcesová 2,3, Luisa Rocha 4 and Pavel Mareš 1 1 Institute of Physiology, Academy of Sciences of the Czech Republic, 14220 Prague, Czech Republic; [email protected] 2 Faculty of Science, Charles University, 12800 Prague, Czech Republic; [email protected] (Z.B.); [email protected] (S.M.); [email protected] (D.P.) 3 National Institute of Mental Health, 25067 Klecany, Czech Republic 4 Pharmacobiology Department, Center of Research and Advanced Studies, Mexico City 14330, Mexico; [email protected] * Correspondence: [email protected]; Tel.: +420-2-4106-2565 Received: 31 March 2020; Accepted: 28 April 2020; Published: 30 April 2020 Abstract: Benzodiazepines (BZDs) are widely used in patients of all ages. Unlike adults, neonatal animals treated with BZDs exhibit a variety of behavioral deficits later in life; however, the mechanisms underlying these deficits are poorly understood. This study aims to examine whether administration of clonazepam (CZP; 1 mg/kg/day) in 7–11-day-old rats affects Gama aminobutyric acid (GABA)ergic receptors in both the short and long terms. Using RT-PCR and quantitative autoradiography, we examined the expression of the selected GABAA receptor subunits (α1, α2, α4, γ2, and δ) and the GABAB B2 subunit, and GABAA, benzodiazepine, and GABAB receptor binding 48 h, 1 week, and 2 months after treatment discontinuation. Within one week after CZP cessation, the expression of the α2 subunit was upregulated, whereas that of the δ subunit was downregulated in both the hippocampus and cortex.
    [Show full text]
  • Characterization of Zebrafish GABAA Receptor Subunits
    www.nature.com/scientificreports OPEN Characterization of zebrafsh GABAA receptor subunits Kenichiro Sadamitsu, Leona Shigemitsu, Marina Suzuki, Daishi Ito, Makoto Kashima & Hiromi Hirata* γ-Aminobutyric acid (GABA), the major inhibitory neurotransmitter in the central nervous system, exerts its efect through the activation of GABA receptors. GABAA receptors are ligand-gated chloride channels composed of fve subunit proteins. Mammals have 19 diferent GABAA receptor subunits (α1–6, β1–3, γ1–3, δ, ε, π, θ, and ρ1–3), the physiological properties of which have been assayed by electrophysiology. However, the evolutionary conservation of the physiological characteristics of diverged GABAA receptor subunits remains unclear. Zebrafsh have 23 subunits (α1, α2a, α2b, α3–5, α6a, α6b, β1–4, γ1–3, δ, π, ζ, ρ1, ρ2a, ρ2b, ρ3a, and ρ3b), but the electrophysiological properties of these subunits have not been explored. In this study, we cloned the coding sequences for zebrafsh GABAA receptor subunits and investigated their expression patterns in larval zebrafsh by whole- mount in situ hybridization. We also performed electrophysiological recordings of GABA-evoked currents from Xenopus oocytes injected with one or multiple zebrafsh GABAA receptor subunit cRNAs and calculated the half-maximal efective concentrations (EC50s) for each. Our results revealed the spatial expressions and electrophysiological GABA sensitivities of zebrafsh GABAA receptors, suggesting that the properties of GABAA receptor subunits are conserved among vertebrates. γ-Aminobutyric acid (GABA), the major inhibitory neurotransmitter in the central nervous system of vertebrates, 1 controls the excitability of neural networks mainly through GABA A receptors . Te GABAA receptor mediates two types of inhibition, known as phasic and tonic inhibition2.
    [Show full text]
  • Molecular Mechanisms Driving Prostate Cancer Neuroendocrine Differentiation
    Molecular mechanisms driving prostate cancer neuroendocrine differentiation Submitted by Joseph Edward Sutton Supervisory team: Dr Amy Poole (DoS) Dr Jennifer Fraser Dr Gary Hutchison A thesis submitted in partial fulfilment of the requirements of Edinburgh Napier University, for the award of Doctor of Philosophy. October 2019 School of Applied Sciences Edinburgh Napier University Edinburgh Declaration It is hereby declared that this thesis is the result of the author’s original research. It has been composed by the author and has not been previously submitted for examination which has led to the award of a degree. Signed: II Dedication This thesis is dedicated to my grandfather William ‘Harry’ Russell, who died of stomach cancer in 2014. Thank you for always encouraging me to achieve my ambitions, believing in me and for retaining your incredible positivity and sense of humour, even at the very end of your life. III Acknowledgements First of all, I would like to acknowledge my parents, who dedicated so much effort and energy into helping me to achieve my lifelong ambition of becoming a scientist. From taking me to the Natural History and Science Museums in London as a child, to tolerating my obsession with Jurassic Park and continuing to support me in both of your unique yet equally important ways, thank you. I would also like to thank my PhD supervisors Dr Amy Poole and Dr Jenny Fraser, not only for their excellent scientific guidance but also for their great banter and encouragement along the way. Thank you for seeing some potential in me, taking a chance on me and for helping me to continue my scientific journey.
    [Show full text]
  • The Regulation of Neuronal Excitability and Nociception by Tonic Gabaergic Inhibition
    THE REGULATION OF NEURONAL EXCITABILITY AND NOCICEPTION BY TONIC GABAERGIC INHIBITION by Robert Paul Bonin A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Department of Physiology University of Toronto © Copyright by Robert P. Bonin 2011 The Regulation of Neuronal Excitability and Nociception by Tonic GABAergic Inhibition Robert Paul Bonin Doctor of Philosophy Department of Physiology University of Toronto 2011 Abstract The mammalian central nervous system maintains a delicate balance between neuronal excitation and inhibition. Conventional synaptic inhibition is mediated through the transient activity of postsynaptic γ-aminobutyric acid (GABA) at type A GABA (GABAA) receptors. A subset of GABAA receptors is also located outside of inhibitory synapses. These extrasynaptic receptors generate a tonic inhibitory conductance in response to low concentrations of extracellular GABA. Tonic inhibition broadly suppresses neuronal activity and regulates many vital processes such as sleep, consciousness and memory formation. This thesis examines the physiological effects of tonic inhibition at the cellular level and in the behaving animal. This thesis also explores whether gabapentin, a commonly used sedative, anxiolytic, and analgesic drug, enhances tonic GABAergic inhibition. I hypothesize that: (1) tonic GABAA receptor activity reduces the intrinsic excitability of neurons; (2) the activity of tonically active GABAA receptors in spinal pain pathways attenuates nociception; and (3) tonic inhibition can be upregulated by gabapentin. ii The results show that a tonic inhibitory current generated by α5 subunit-containing GABAA (α5GABAA) receptors reduces the excitability of hippocampal pyramidal neurons excitability by increasing the rheobase, but does not change the gain of action potential firing.
    [Show full text]
  • Research Article Microarray-Based Comparisons of Ion Channel Expression Patterns: Human Keratinocytes to Reprogrammed Hipscs To
    Hindawi Publishing Corporation Stem Cells International Volume 2013, Article ID 784629, 25 pages http://dx.doi.org/10.1155/2013/784629 Research Article Microarray-Based Comparisons of Ion Channel Expression Patterns: Human Keratinocytes to Reprogrammed hiPSCs to Differentiated Neuronal and Cardiac Progeny Leonhard Linta,1 Marianne Stockmann,1 Qiong Lin,2 André Lechel,3 Christian Proepper,1 Tobias M. Boeckers,1 Alexander Kleger,3 and Stefan Liebau1 1 InstituteforAnatomyCellBiology,UlmUniversity,Albert-EinsteinAllee11,89081Ulm,Germany 2 Institute for Biomedical Engineering, Department of Cell Biology, RWTH Aachen, Pauwelstrasse 30, 52074 Aachen, Germany 3 Department of Internal Medicine I, Ulm University, Albert-Einstein Allee 11, 89081 Ulm, Germany Correspondence should be addressed to Alexander Kleger; [email protected] and Stefan Liebau; [email protected] Received 31 January 2013; Accepted 6 March 2013 Academic Editor: Michael Levin Copyright © 2013 Leonhard Linta et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Ion channels are involved in a large variety of cellular processes including stem cell differentiation. Numerous families of ion channels are present in the organism which can be distinguished by means of, for example, ion selectivity, gating mechanism, composition, or cell biological function. To characterize the distinct expression of this group of ion channels we have compared the mRNA expression levels of ion channel genes between human keratinocyte-derived induced pluripotent stem cells (hiPSCs) and their somatic cell source, keratinocytes from plucked human hair. This comparison revealed that 26% of the analyzed probes showed an upregulation of ion channels in hiPSCs while just 6% were downregulated.
    [Show full text]
  • Assessment of Molecular Action of Direct Gating and Allosteric Modulatory Effects of Carisoprodol (Somartm) on GABA a Receptors
    Graduate Theses, Dissertations, and Problem Reports 2015 Assessment of molecular action of direct gating and allosteric modulatory effects of carisoprodol (SomaRTM) on GABA A receptors Manoj Kumar Follow this and additional works at: https://researchrepository.wvu.edu/etd Recommended Citation Kumar, Manoj, "Assessment of molecular action of direct gating and allosteric modulatory effects of carisoprodol (SomaRTM) on GABA A receptors" (2015). Graduate Theses, Dissertations, and Problem Reports. 6022. https://researchrepository.wvu.edu/etd/6022 This Dissertation is protected by copyright and/or related rights. It has been brought to you by the The Research Repository @ WVU with permission from the rights-holder(s). You are free to use this Dissertation in any way that is permitted by the copyright and related rights legislation that applies to your use. For other uses you must obtain permission from the rights-holder(s) directly, unless additional rights are indicated by a Creative Commons license in the record and/ or on the work itself. This Dissertation has been accepted for inclusion in WVU Graduate Theses, Dissertations, and Problem Reports collection by an authorized administrator of The Research Repository @ WVU. For more information, please contact [email protected]. ASSESSMENT OF MOLECULAR ACTION OF DIRECT GATING AND ALLOSTERIC MODULATORY EFFECTS OF MEPROBAMATE (MILTOWN®) ON GABAA RECEPTORS Manish Kumar, MD, MS Dissertation submitted to the School of Pharmacy at West Virginia University in partial fulfillment of Requirements
    [Show full text]
  • Cross-Tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues Received: 20 January 2016 Idit Kosti, Nishant Jain, Dvir Aran, Atul J
    www.nature.com/scientificreports OPEN Cross-tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues Received: 20 January 2016 Idit Kosti, Nishant Jain, Dvir Aran, Atul J. Butte & Marina Sirota Accepted: 30 March 2016 The central dogma of molecular biology describes the translation of genetic information from mRNA Published: 04 May 2016 to protein, but does not specify the quantitation or timing of this process across the genome. We have analyzed protein and gene expression in a diverse set of human tissues. To study concordance and discordance of gene and protein expression, we integrated mass spectrometry data from the Human Proteome Map project and RNA-Seq measurements from the Genotype-Tissue Expression project. We analyzed 16,561 genes and the corresponding proteins in 14 tissue types across nearly 200 samples. A comprehensive tissue- and gene-specific analysis revealed that across the 14 tissues, correlation between mRNA and protein expression was positive and ranged from 0.36 to 0.5. We also identified 1,012 genes whose RNA and protein expression was correlated across all the tissues and examined genes and proteins that were concordantly and discordantly expressed for each tissue of interest. We extended our analysis to look for genes and proteins that were differentially correlated in cancer compared to normal tissues, showing higher levels of correlation in normal tissues. Finally, we explored the implications of these findings in the context of biomarker and drug target discovery. In recent years, techniques used to conduct tissue-wide analysis of gene expression, such as microarrays and RNA sequencing technologies (RNA-Seq), have become widely used1,2.
    [Show full text]
  • Expression of GABAA Α2-, Β1- And
    OPEN Citation: Transl Psychiatry (2013) 3, e303; doi:10.1038/tp.2013.64 & 2013 Macmillan Publishers Limited All rights reserved 2158-3188/13 www.nature.com/tp ORIGINAL ARTICLE Expression of GABAA a2-, b1- and e-receptors are altered significantly in the lateral cerebellum of subjects with schizophrenia, major depression and bipolar disorder SH Fatemi1,2,3, TD Folsom1, RJ Rooney4 and PD Thuras5 There is abundant evidence that dysfunction of the g-aminobutyric acid (GABA)ergic signaling system is implicated in the pathology of schizophrenia and mood disorders. Less is known about the alterations in protein expression of GABA receptor subunits in brains of subjects with schizophrenia and mood disorders. We have previously demonstrated reduced expression of GABAB receptor subunits 1 and 2 (GABBR1 and GABBR2) in the lateral cerebella of subjects with schizophrenia, bipolar disorder and major depressive disorder. In the current study, we have expanded these studies to examine the mRNA and protein expression of 12 GABAA subunit proteins (a1, a2, a3, a5, a6, b1, b2, b3, d, e, g2 and g3) in the lateral cerebella from the same set of subjects with schizophrenia (N ¼ 9–15), bipolar disorder (N ¼ 10–15) and major depression (N ¼ 12–15) versus healthy controls (N ¼ 10–15). We found significant group effects for protein levels of the a2-, b1- and e-subunits across treatment groups. We also found a significant group effect for mRNA levels of the a1-subunit across treatment groups. New avenues for treatment, such as the use of neurosteroids to promote GABA modulation, could potentially ameliorate GABAergic dysfunction in these disorders.
    [Show full text]
  • Ion Channels
    UC Davis UC Davis Previously Published Works Title THE CONCISE GUIDE TO PHARMACOLOGY 2019/20: Ion channels. Permalink https://escholarship.org/uc/item/1442g5hg Journal British journal of pharmacology, 176 Suppl 1(S1) ISSN 0007-1188 Authors Alexander, Stephen PH Mathie, Alistair Peters, John A et al. Publication Date 2019-12-01 DOI 10.1111/bph.14749 License https://creativecommons.org/licenses/by/4.0/ 4.0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2019/20: Ion channels. British Journal of Pharmacology (2019) 176, S142–S228 THE CONCISE GUIDE TO PHARMACOLOGY 2019/20: Ion channels Stephen PH Alexander1 , Alistair Mathie2 ,JohnAPeters3 , Emma L Veale2 , Jörg Striessnig4 , Eamonn Kelly5, Jane F Armstrong6 , Elena Faccenda6 ,SimonDHarding6 ,AdamJPawson6 , Joanna L Sharman6 , Christopher Southan6 , Jamie A Davies6 and CGTP Collaborators 1School of Life Sciences, University of Nottingham Medical School, Nottingham, NG7 2UH, UK 2Medway School of Pharmacy, The Universities of Greenwich and Kent at Medway, Anson Building, Central Avenue, Chatham Maritime, Chatham, Kent, ME4 4TB, UK 3Neuroscience Division, Medical Education Institute, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK 4Pharmacology and Toxicology, Institute of Pharmacy, University of Innsbruck, A-6020 Innsbruck, Austria 5School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol, BS8 1TD, UK 6Centre for Discovery Brain Science, University of Edinburgh, Edinburgh, EH8 9XD, UK Abstract The Concise Guide to PHARMACOLOGY 2019/20 is the fourth in this series of biennial publications. The Concise Guide provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to the open access knowledgebase source of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties.
    [Show full text]
  • Replicated Risk Nicotinic Cholinergic Receptor Genes for Nicotine Dependence
    G C A T T A C G G C A T genes Article Replicated Risk Nicotinic Cholinergic Receptor Genes for Nicotine Dependence Lingjun Zuo 1, Rolando Garcia-Milian 2, Xiaoyun Guo 1,3,4,*, Chunlong Zhong 5,*, Yunlong Tan 6, Zhiren Wang 6, Jijun Wang 3, Xiaoping Wang 7, Longli Kang 8, Lu Lu 9,10, Xiangning Chen 11,12, Chiang-Shan R. Li 1 and Xingguang Luo 1,6,* 1 Department of Psychiatry, Yale University School of Medicine, New Haven, CT 06510, USA; [email protected] (L.Z.); [email protected] (C.-S.R.L.) 2 Curriculum & Research Support Department, Cushing/Whitney Medical Library, Yale University School of Medicine, New Haven, CT 06510, USA; [email protected] 3 Shanghai Mental Health Center, Shanghai 200030, China; [email protected] 4 Department of Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, CT 06510, USA 5 Department of Neurosurgery, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200127, China 6 Biological Psychiatry Research Center, Beijing Huilongguan Hospital, Beijing 100096, China; [email protected] (Y.T.); [email protected] (Z.W.) 7 Department of Neurology, Shanghai First People’s Hospital, Shanghai Jiao Tong University, Shanghai 200080, China; [email protected] 8 Key Laboratory for Molecular Genetic Mechanisms and Intervention Research on High Altitude Diseases of Tibet Autonomous Region, Xizang Minzu University School of Medicine, Xianyang, Shanxi 712082, China; [email protected] 9 Provincial Key Laboratory for Inflammation and Molecular Drug Target, Medical
    [Show full text]
  • A Network Integration Approach for Drug-Target Interaction Prediction and Computational Drug Repositioning from Heterogeneous Information
    bioRxiv preprint doi: https://doi.org/10.1101/100305; this version posted January 13, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. A Network Integration Approach for Drug-Target Interaction Prediction and Computational Drug Repositioning from Heterogeneous Information Yunan Luo1,3,y, Xinbin Zhao2,y, Jingtian Zhou2,y, Jinling Yang1, Yanqing Zhang1, Wenhua Kuang2, Jian Peng3,*, Ligong Chen2,*, and Jianyang Zeng1,* 1Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China 2School of Pharmaceutical Sciences, Tsinghua University, Beijing, China 3Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, IL, USA yThese authors contributed equally to this work *Corresponding authors: [email protected], [email protected] and [email protected] Abstract The emergence of large-scale genomic, chemical and pharmacological data provides new opportunities for drug discovery and repositioning. Systematic integration of these heterogeneous data not only serves as a promising tool for identifying new drug-target interactions (DTIs), which is an important step in drug development, but also provides a more complete understanding of the molecular mechanisms of drug action. In this work, we integrate diverse drug-related information, including drugs, proteins, diseases and side-effects, together with their interactions, associations or similarities, to construct a heterogeneous network with 12,015 nodes and 1,895,445 edges. We then develop a new computational pipeline, called DTINet, to predict novel drug-target interactions from the constructed heterogeneous network.
    [Show full text]