Chlorophyceae
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Green Algae in Tundra Soils Affected by Coal Mine Pollutions*
Biologia 63/6: 831—835, 2008 Section Botany DOI: 10.2478/s11756-008-0107-y Green algae in tundra soils affected by coal mine pollutions* Elena N. Patova 1 &MarinaF.Dorokhova2 1Institute of Biology, Komi Scientific Centre, Ural Division, Russian Academy of Sciences, Kommunisticheskaya st. 28, 167982, Syktyvkar, Komi Republic, Russia; e-mail: [email protected] 2Moscow State University, Faculty of Geography, Vorobievy Gory GSP-2, 119992, Moscow, Russia; e-mail: doro- [email protected] Abstract: Green algal communities were investigated in clean and pollution-impacted tundra soils around the large coal mine industrial complex of Vorkuta in the E. European Russian tundra. Samples were collected in three zones of open-cast coal mining with different degrees of pollution-impacted soil transformation. A total of 42 species of algae were found in all zones. The species richness decreased from 27 species in undisturbed zones to 19 species in polluted zones. Under open-cast coal mining impacts the community structure simplified, and the dominant algae complexes changed. Algae that are typical for clean soils disappeared from the communities. The total abundance of green algae (counted together with Xanthophyta) ranged between 100–120 × 103 (cells/g dry soils) in undisturbed zones and 0.5–50 × 103 in polluted zones. Soil algae appear to be better indicators of coal mine technogenic pollution than flowering plants and mosses. Key words: green algae; diversity; coal mine impact; soil; north-European Russian tundra Introduction tundra soils around the large industrial coal mine complex of Vorkuta in the north-European Russian tundra (Fig. 1). Soil algae are an important autotrophic component of This region is exposed to heavy air pollution. -
Community Characteristics Analysis of Eukaryotic Microplankton Via ITS Gene Metabarcoding Based on Environmental DNA in Lower Reaches of Qiantang River, China
Open Journal of Animal Sciences, 2021, 11, 105-124 https://www.scirp.org/journal/ojas ISSN Online: 2161-7627 ISSN Print: 2161-7597 Community Characteristics Analysis of Eukaryotic Microplankton via ITS Gene Metabarcoding Based on Environmental DNA in Lower Reaches of Qiantang River, China Aiju Zhang1, Jun Wang1, Yabin Hao1, Shanshi Xiao1, Wei Luo1, Ganxiang Wang2, Zhiming Zhou1 1Agriculture Ministry Key Laboratory of Healthy Freshwater Aquaculture, Key Laboratory of Freshwater Aquaculture Genetic and Breeding of Zhejiang Province, Zhejiang Research Center of East China Sea Fishery Research Institute, Zhejiang Institute of Freshwater Fisheries, Huzhou, China 2Pinghu Fisheries Technology Promotion Center, Pinghu, China How to cite this paper: Zhang, A.J., Wang, Abstract J., Hao, Y.B., Xiao, S.S., Luo, W., Wang, G.X. and Zhou, Z.M. (2021) Community Eukaryotic microplankton plays an important role in water biotic community Characteristics Analysis of Eukaryotic and in maintaining the stability of water ecosystems. Environmental DNA Microplankton via ITS Gene Metabarcod- metabarcoding provides the opportunity to integrate traditional and emerg- ing Based on Environmental DNA in Low- er Reaches of Qiantang River, China. Open ing approaches to discover more new species, and develop molecular biotic Journal of Animal Sciences, 11, 105-124. indices that can be more rapidly, frequently, and robustly used in water qual- https://doi.org/10.4236/ojas.2021.112009 ity assessments. In order to examine assemblages of eukaryotic microplank- ton in lower reaches of Qiantang River, ITS gene metabarcoding technology Received: January 13, 2021 based on environmental DNA was carried out. As a result, various species of Accepted: March 30, 2021 Published: April 2, 2021 phytoplankton, fungi and zooplankton were annotated on. -
Comparative Genomic View of the Inositol-1, 4, 5-Trisphosphate
Title Comparative Genomic View of The Inositol-1,4,5-Trisphosphate Receptor in Plants Author(s) Mikami, Koji Citation Journal of Plant Biochemistry & Physiology, 02(02) Issue Date 2014-9-15 Doc URL http://hdl.handle.net/2115/57862 Type article File Information comparative-genomic-view-of-the-inositoltrisphosphate-receptor.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP Mikami, J Plant Biochem Physiol 2014, 2:3 Plant Biochemistry & Physiology http://dx.doi.org/10.4172/2329-9029.1000132 HypothesisResearch Article OpenOpen Access Access Comparative Genomic View of The Inositol-1,4,5-Trisphosphate Receptor in Plants Koji Mikami* Faculty of Fisheries Sciences, Hokkaido University, 3-1-1 Minato-cho, Hakodate 041 - 8611, Japan Abstract 2+ Terrestrial plants lack inositol-1,4,5-trisphosphate (IP3) receptor regulating transient Ca increase to activate 2+- cellular Ca dependent physiological events. To understand an evolutional route of the loss of the IP3 receptor gene, conservation of the IP3 receptor gene in algae was examined in silico based on the accumulating information of genomes and expression sequence tags. Results clearly demonstrated that the lack of the gene was observed in Rhodophyta, Chlorophyta except for Volvocales and Streptophyta. It was therefore hypothesized that the plant IP3 receptor gene was eliminated from the genome at multiple occasions; after divergence of Chlorophyta and Rhodophyta and of Chlorophyta and Charophyta. Keywords: Alga; Ca2+; Comparative genomics; Gene; Inositol-1,4,5- was probably lost from lineages of red algae and green algae except for trisphosphate receptor Volvocales (Figure 1). In fact, the genomes of unicellular Aureococcus anophagefferrens and multicellular Ectocarpus siliculosus carry an IP3 Abbreviations: DAG: Diacylglycerol; IP3: Inositol-1,4,5- receptor gene homologue (Figure 1). -
Les Algues Du Fleuve Niger Et Des Milieux Humides Connexes De L’Ouest Du Niger
RÉPUBLIQUE DU NIGER N°………….. Fraternité-Travail-Progrès UNIVERSITÉ ABDOU MOUMOUNI Faculté des Sciences et Techniques Département de Biologie THÈSE UNIQUE DE DOCTORAT DE L’UNIVERSITÉ ABDOU MOUMOUNI Présentée par Monsieur Djima Idrissou Tahirou Pour obtenir le grade de DOCTEUR DE L’UNIVERSITÉ ABDOU MOUMOUNI DOMAINE Taxonomie, Morphologie et Biologie Végétales SPÉCIALITÉ Phycologie SUJET DE LA THÈSE LES ALGUES DU FLEUVE NIGER ET DES MILIEUX HUMIDES CONNEXES DE L’OUEST DU NIGER Thèse présentée et soutenue à Niamey le 28 Février 2013 devant le jury composé de : Monsieur AKÉ Assi Laurent, Professeur, Université Félix Houphouët-Boigny, Abidjan, Président Monsieur SAADOU Mahamane, Professeur, Université Abdou Moumouni, Niamey, Directeur de thèse Monsieur COUTÉ Alain, Professeur, Muséum National d’Histoire Naturelle, Paris, Rapporteur Monsieur DA Kouhété Philippe, Maître de Conférences, Université Félix Houphouët-Boigny, Abidjan, Rapporteur Monsieur MAHAMANE Ali, Professeur, Université Abdou Moumouni, Niamey, Examinateur Laboratoire de Biologie Végétale GARBA Mounkaïla Faculté des Sciences/Université ABDOU Moumouni/ Niamey/NIGER BP 10 662 Niamey-Niger Tél : +227 96 53 16 33 / +227 94 85 56 38 Table des matières Liste de figures ................................................................................................................... viii Liste des tableaux ...................................................................................................................x Principales Abréviations ...................................................................................................... -
The Symbiotic Green Algae, Oophila (Chlamydomonadales
University of Connecticut OpenCommons@UConn Master's Theses University of Connecticut Graduate School 12-16-2016 The yS mbiotic Green Algae, Oophila (Chlamydomonadales, Chlorophyceae): A Heterotrophic Growth Study and Taxonomic History Nikolaus Schultz University of Connecticut - Storrs, [email protected] Recommended Citation Schultz, Nikolaus, "The yS mbiotic Green Algae, Oophila (Chlamydomonadales, Chlorophyceae): A Heterotrophic Growth Study and Taxonomic History" (2016). Master's Theses. 1035. https://opencommons.uconn.edu/gs_theses/1035 This work is brought to you for free and open access by the University of Connecticut Graduate School at OpenCommons@UConn. It has been accepted for inclusion in Master's Theses by an authorized administrator of OpenCommons@UConn. For more information, please contact [email protected]. The Symbiotic Green Algae, Oophila (Chlamydomonadales, Chlorophyceae): A Heterotrophic Growth Study and Taxonomic History Nikolaus Eduard Schultz B.A., Trinity College, 2014 A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science at the University of Connecticut 2016 Copyright by Nikolaus Eduard Schultz 2016 ii ACKNOWLEDGEMENTS This thesis was made possible through the guidance, teachings and support of numerous individuals in my life. First and foremost, Louise Lewis deserves recognition for her tremendous efforts in making this work possible. She has performed pioneering work on this algal system and is one of the preeminent phycologists of our time. She has spent hundreds of hours of her time mentoring and teaching me invaluable skills. For this and so much more, I am very appreciative and humbled to have worked with her. Thank you Louise! To my committee members, Kurt Schwenk and David Wagner, thank you for your mentorship and guidance. -
Dynamics of Phytoplankton Communities in Eutrophying Tropical Shrimp Ponds Affected by Vibriosis
1 Marine Pollution Bulletin Achimer September 2016, Volume 110, Issue 1, Pages 449-459 http://dx.doi.org/10.1016/j.marpolbul.2016.06.015 http://archimer.ifremer.fr http://archimer.ifremer.fr/doc/00343/45411/ © 2016 Elsevier Ltd. All rights reserved. Dynamics of phytoplankton communities in eutrophying tropical shrimp ponds affected by vibriosis Lemonnier Hugues 1, *, Lantoine François 2, Courties Claude 2, Guillebault Delphine 2, 3, Nézan Elisabeth 4, Chomérat Nicolas 4, Escoubeyrou Karine 5, Galinié Christian 6, Blockmans Bernard 6, Laugier Thierry 1 1 IFREMER LEAD, BP 2059, 98846 Nouméa cedex, New Caledonia, France 2 Sorbonne Universités, UPMC Univ Paris 06, UMR 8222, LECOB, Observatoire Océanologique, F- 66650 Banyuls/mer, France 3 Microbia Environnement, Observatoire Océanologique de Banyuls, 66650 Banyuls-sur mer, France 4 IFREMER, LER BO, Station de Biologie Marine, Place de la Croix, BP 40537, 29185 Concarneau Cedex, France 5 Sorbonne Universités, UPMC Univ Paris 06, CNRS, Plate-forme Bio2Mar, Observatoire Océanologique, F-66650 Banyuls/Mer, France 6 GFA, Groupement des Fermes Aquacoles, ORPHELINAT, 1 rue Dame Lechanteur, 98800 Nouméa cedex, New Caledonia, France * Corresponding author : Hugues Lemonnier, email address : [email protected] Abstract : Tropical shrimp aquaculture systems in New Caledonia regularly face major crises resulting from outbreaks of Vibrio infections. Ponds are highly dynamic and challenging environments and display a wide range of trophic conditions. In farms affected by vibriosis, phytoplankton biomass and composition are highly variable. These conditions may promote the development of harmful algae increasing shrimp susceptibility to bacterial infections. Phytoplankton compartment before and during mortality outbreaks was monitored at a shrimp farm that has been regularly and highly impacted by these diseases. -
Comparative Genomic View of the Inositol-1,4,5-Trisphosphate Receptor in Plants
Title Comparative Genomic View of The Inositol-1,4,5-Trisphosphate Receptor in Plants Author(s) Mikami, Koji Journal of Plant Biochemistry & Physiology, 02(02) Citation https://doi.org/10.4172/2329-9029.1000132 Issue Date 2014-9-15 Doc URL http://hdl.handle.net/2115/57862 Type article File Information comparative-genomic-view-of-the-inositoltrisphosphate-receptor.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP Mikami, J Plant Biochem Physiol 2014, 2:3 Plant Biochemistry & Physiology http://dx.doi.org/10.4172/2329-9029.1000132 HypothesisResearch Article OpenOpen Access Access Comparative Genomic View of The Inositol-1,4,5-Trisphosphate Receptor in Plants Koji Mikami* Faculty of Fisheries Sciences, Hokkaido University, 3-1-1 Minato-cho, Hakodate 041 - 8611, Japan Abstract 2+ Terrestrial plants lack inositol-1,4,5-trisphosphate (IP3) receptor regulating transient Ca increase to activate 2+- cellular Ca dependent physiological events. To understand an evolutional route of the loss of the IP3 receptor gene, conservation of the IP3 receptor gene in algae was examined in silico based on the accumulating information of genomes and expression sequence tags. Results clearly demonstrated that the lack of the gene was observed in Rhodophyta, Chlorophyta except for Volvocales and Streptophyta. It was therefore hypothesized that the plant IP3 receptor gene was eliminated from the genome at multiple occasions; after divergence of Chlorophyta and Rhodophyta and of Chlorophyta and Charophyta. Keywords: Alga; Ca2+; Comparative genomics; Gene; Inositol-1,4,5- was probably lost from lineages of red algae and green algae except for trisphosphate receptor Volvocales (Figure 1). -
Molecular Phylogeny and Taxonomic Revision of Chaetophoralean Algae (Chlorophyta)
University of South Bohemia in České Budějovice Faculty of Science Molecular phylogeny and taxonomic revision of chaetophoralean algae (Chlorophyta) Ph.D. Thesis Mgr. Lenka Caisová Supervisor RNDr. Jiří Neustupa, Ph.D. Department of Botany, Faculty of Sciences, Charles University in Prague Formal supervisor Prof. RNDr. Jiří Komárek, DrSc. University of South Bohemia, Faculty of Science, Institute of Botany, Academy of Sciences, Třeboň Consultants Prof. Dr. Michael Melkonian Biozentrum Köln, Botanisches Institut, Universität zu Köln, Germany Mgr. Pavel Škaloud, Ph.D. Department of Botany, Faculty of Sciences, Charles University in Prague České Budějovice, 2011 Caisová, L. 2011: Molecular phylogeny and taxonomic revision of chaetophoralean algae (Chlorophyta). PhD. Thesis, composite in English. University of South Bohemia, Faculty of Science, České Budějovice, Czech Republic, 110 pp, shortened version 30 pp. Annotation Since the human inclination to estimate and trace natural diversity, usable species definitions as well as taxonomical systems are required. As a consequence, the first proposed classification schemes assigned the filamentous and parenchymatous taxa to the green algal order Chaetophorales sensu Wille. The introduction of ultrastructural and molecular methods provided novel insight into algal evolution and generated taxonomic revisions based on phylogenetic inference. However, until now, the number of molecular phylogenetic studies focusing on the Chaetophorales s.s. is surprisingly low. To enhance knowledge about phylogenetic -
Rike Bacteria Protozoa Chromista Plantae
Svenska art projekt et Forskningsprioriteringar 2017 2017-03-21 RIKE UNDERRIKE INFRARIKE ÖVERSTAM DIVISION/STAM Ordning KLASS UNDERKLASS INFRAKLASS ÖVERORDNING Underordning "Infraordning" Familj SUBDIVISION/UNDERSTAM INFRASTAM ÖVERKLASS Överfamilj Underfamilj Forskningsprioritet Forskningsprioritet: 1= Mycket hög; 2= Hög; 3. Medelhög; 4= Låg; 5= Mycket låg BACTERIA 5 CYANOBACTERIA 5 PROTOZOA 5 EBRIOPHYCEAE 5 CILIOPHORA 5 FORAMINIFERA 5 CHOANOZOA 5 CHOANOFLAGELLIDA 5 MESOMYCETOZOEA 5 MYZOZOA 5 ELLOBIOPSEA 5 DINOPHYCEAE 5 EUGLENOZOA 5 EUGLENOPHYCEAE 5 Euglenales 5 Eutreptiales (syn. Sphenomonadales) 5 CERCOZOA 5 ASCETOSPOREA 5 PHYTOMYXEA (syn. PLASMODIOPHOROMYCETES) 5 LABYRINTHISTA ( syn. LABYRINTHULOMYCOTA) 5 APICOMPLEXA 5 PERCOLOZOA 5 HETEROLOBOSEA 5 Acrasida (syn. Acrasiomycetes) 5 SARCOMASTIGOPHORA 5 MYCETOZOA 3 DICTYOSTELIOMYCETES 5 MYXOMYCETES 3 PROTOSTELIOMYCETES 3 CHROMISTA CRYPTOPHYTA 5 HETEROKONTOPHYTA PHAEOPHYCEAE 3 Övriga klasser 5 BACILLARIOPHYTA 5 HAPTOPHYTA 5 HYPHOCHYTRIOMYCOTA 5 OOMYCOTA 3 PLANTAE BILIPHYTA RHODOPHYTA 2 VIRIDIPLANTAE CHLOROPHYTA CHLOROPHYTA CHLOROPHYCEAE Chaetophorales 3 Microsporales 3 1 Svenska art projekt et Forskningsprioriteringar 2017 2017-03-21 RIKE UNDERRIKE INFRARIKE ÖVERSTAM DIVISION/STAM Ordning KLASS UNDERKLASS INFRAKLASS ÖVERORDNING Underordning "Infraordning" Familj SUBDIVISION/UNDERSTAM INFRASTAM ÖVERKLASS Överfamilj Underfamilj Forskningsprioritet Oedogoniales 4 Övriga ordningar 5 ULVOPHYCEAE 3 TREBOUXIOPHYCEAE Prasiolales 3 Microthamniales 3 Övriga ordningar 5 PEDINOPHYCEAE 5 PRASINOPHYCEAE -
2010 South Fork Holston River Environmental Monitoring Studies
2010 South Fork Holston River Environmental Monitoring Studies Patrick Center for Environmental Research 2010 South Fork Holston River Environmental Monitoring Studies Report No. 10-04F Submitted to: Eastman Chemical Company Tennessee Operations Submitted by: Patrick Center for Environmental Research 1900 Benjamin Franklin Parkway Philadelphia, PA 19103-1195 April 20, 2012 Executive Summary he 2010 study was the seventh in a series of comprehensive studies of aquatic biota and Twater chemistry conducted by the Academy of Natural Sciences of Drexel University in the vicinity of Kingsport, TN. Previous studies were conducted in 1965, 1967 (cursory study, primarily focusing on al- gae), 1974, 1977, 1980, 1990 and 1997. Elements of the 2010 study included analysis of land cover, basic environmental water chemistry, attached algae and aquatic macrophytes, aquatic insects, non-insect macroinvertebrates, and fish. For each study element, field samples were collected and analyzed from Scientists from the Academy's Patrick Center for Environmental Research zones located on the South Fork Holston River have conducted seven major environmental monitoring studies on the (Zones 2, 3 and 5), Big Sluice (Zone 4), mainstem South Fork Holston River since 1965. Holston River (Zone 6), and Horse Creek (Zones HC1and HC2), the approximate locations of which are shown below. The design of the 2010 study was very similar to that of previous surveys, allowing comparisons among surveys. In addition, two areas of potential local impacts were assessed for the first time: Big Tree Spring (BTS, located on the South Fork within Zone 2) and Kit Bottom (KU and KL in the Big Sluice, upstream of Zone 4). -
Peres Ck Dr Rcla.Pdf (2.769Mb)
UNIVERSIDADE ESTADUAL PAULISTA unesp “JÚLIO DE MESQUITA FILHO” INSTITUTO DE BIOCIÊNCIAS – RIO CLARO PROGRAMA DE PÓS-GRADUAÇÃO EM CIÊNCIAS BIOLÓGICAS (BIOLOGIA VEGETAL) TAXONOMIA, DISTRIBUIÇÃO AMBIENTAL E CONSIDERAÇÕES BIOGEOGRÁFICAS DE ALGAS VERDES MACROSCÓPICAS EM AMBIENTES LÓTICOS DE UNIDADES DE CONSERVAÇÃO DO SUL DO BRASIL CLETO KAVESKI PERES Tese apresentada ao Instituto de Biociências do Câmpus de Rio Claro, Universidade Estadual Paulista, como parte dos requisitos para obtenção do título de Doutor em Ciências Biológicas (Biologia Vegetal). Rio Claro Junho - 2011 CLETO KAVESKI PERES TAXONOMIA, DISTRIBUIÇÃO AMBIENTAL E CONSIDERAÇÕES BIOGEOGRÁFICAS DE ALGAS VERDES MACROSCÓPICAS EM AMBIENTES LÓTICOS DE UNIDADES DE CONSERVAÇÃO DO SUL DO BRASIL ORIENTADOR: Dr. CIRO CESAR ZANINI BRANCO Comissão Examinadora: Prof. Dr. Ciro Cesar Zanini Branco Departamento de Ciências Biológicas – Unesp/ Assis Prof. Dr. Carlos Eduardo de Mattos Bicudo Seção de Ecologia – Instituto de Botânica de São Paulo Prof. Dr. Orlando Necchi Júnior Departamento de Zoologia e Botânica/ IBILCE – UNESP/ São José do Rio Preto Profa. Dra. Ina de Souza Nogueira Departamento de Biologia – Universidade Federal de Goiás Profa. Dra. Célia Leite Sant´Anna Seção de Ficologia – Instituto de Botânica de São Paulo RIO CLARO 2011 AGRADECIMENTOS Muitas pessoas contribuíram com o desenvolvimento desse trabalho e com a minha formação pessoal e gostaria de deixar a todos meu reconhecimento e um sincero agradecimento. Porém, algumas pessoas/instituições foram fundamentais nestes quatro anos de doutorado, sendo imprescindível agradecê-las nominalmente: Aos meus pais, Euclinir e Lidia, por terem sempre acreditado em mim e por me incentivarem a continuar na área que escolhi. Agradeço imensamente pela melhor herança que uma pessoa pode receber que é o exemplo de humildade e dignidade que vocês têm. -
The Catalytic Core of DEMETER Guides Active DNA Demethylation in Arabidopsis
The catalytic core of DEMETER guides active DNA demethylation in Arabidopsis Changqing Zhanga,b,1, Yu-Hung Hunga,b,1, Hyun Jung Rimc,d,e,1, Dapeng Zhangf, Jennifer M. Frostg,2, Hosub Shinc,d,e, Hosung Jangc,d,e, Fang Liua,b,h, Wenyan Xiaof, Lakshminarayan M. Iyeri, L. Aravindi, Xiang-Qian Zhanga,b,j,3, Robert L. Fischerg,3, Jin Hoe Huhc,d,e,3, and Tzung-Fu Hsieha,b,3 aDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27695; bPlants for Human Health Institute, North Carolina State University, North Carolina Research Campus, Kannapolis, NC 28081; cDepartment of Plant Science, Seoul National University, 08826 Seoul, Republic of Korea; dResearch Institute for Agriculture and Life Sciences, Seoul National University, 08826 Seoul, Republic of Korea; ePlant Genomics and Breeding Institute, Seoul National University, 08826 Seoul, Republic of Korea; fDepartment of Biology, St. Louis University, St. Louis, MO 63103; gDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720; hState Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, Guangxi University, 530004 Nanning, China; iNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894; and jCollege of Forestry and Landscape Architecture, South China Agricultural University, 510642 Guangzhou, China Contributed by Robert L. Fischer, July 12, 2019 (sent for review April 29, 2019; reviewed by James J. Giovannoni and Julie A. Law) The Arabidopsis DEMETER (DME) DNA glycosylase demethylates DME encodes a bifunctional 5mC DNA glycosylase/lyase that the maternal genome in the central cell prior to fertilization and is is essential for reproduction (9, 15).