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Amphibia-Reptilia 38 (2017): 483-502 Resurrection of genus Nidirana (Anura: Ranidae) and synonymizing N. caldwelli with N. adenopleura, with description of a new species from China Zhi-Tong Lyu, Zhao-Chi Zeng, Jian Wang, Chao-Yu Lin, Zu-Yao Liu, Ying-Yong Wang∗ Abstract. The taxonomy of Babina sensu lato was controversial in the past decades. In this study, the phylogeny of genus Babina sensu lato was re-constructed based on genetic analysis, morphological comparison and advertisement call analysis. We found that Babina sensu stricto and previous subgenus Nidirana should be two distinct genera in the family Ranidae. N. caldwelli is confirmed to be a synonym of N. adenopleura because of the small genetic divergence and the lack of distinct morphological differences. A new species, Nidirana nankunensis sp. nov. is described based on a series of specimens collected from Mt. Nankun, Guangdong Province, China, which can be distinguished from other known congeners by having a behavior of nest construction, distinctive advertisement calls, significant divergence in the mitochondrial genes, and a combination of morphological characters. Currently, the genus Babina contains two species and the genus Nidirana contains eight species. Keywords: Babina, bioacoustic, mitochondrial DNA, morphology, Nidirana nankunensis sp. nov., phylogeny. Introduction folds (Dubois, 1992). Subsequently, Nidirana was recognized as a separate genus by Chen The ranid genus Babina was established and de- et al. (2005), based on a molecular phyloge- scribed on the basis of Rana holsti Boulenger, netic tree of Southeast Asian ranids that only 1892 (type species) and Rana subaspera Bar- included one Nidirana species – R. (N.) cha- bour, 1908 by Thompson (1912). -
Diversification of Afrobatrachian Frogs and the Herpetofauna of the Arabian Peninsula
Diversification of Afrobatrachian Frogs and the Herpetofauna of the Arabian Peninsula By Daniel Portik A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Dr. Jimmy A. McGuire, Chair Dr. Rauri Bowie Dr. David Blackburn Dr. Rosemary Gillespie Fall 2015 Abstract Diversification of Afrobatrachian Frogs and the Herpetofauna of the Arabian Peninsula by Daniel Portik Doctor of Philosophy in Biology University of California, Berkeley Dr. Jimmy A. McGuire, Chair The identification of biotic and abiotic factors that promote the diversification of clades across Africa and the Arabian Peninsula remains a difficult challenge. A variety of ecological and evolutionary processes can be driving such patterns, and clade-specific traits may also play a role in the evolution of these groups. Comparative evolutionary studies of particular clades, relying on a phylogenetic framework, can be used to investigate many of these topics. Beyond these mechanisms there are abiotic factors, such as geological events, that can drive vicariance and dispersal events for large sets of taxa. The investigation of historical biogeography in a comparative phylogenetic framework can be used to detect such patterns. My dissertation explores these topics using reptiles and amphibians as study systems, and I rely on the generation of molecular sequence data, phylogenetics, and the use of comparative phylogenetic methods to address a variety of questions. I provide the abstract for each chapter below. Chapter 1: The reproductive modes of anurans (frogs and toads) are the most diverse among all the terrestrial vertebrates, and a major challenge is identifying selective factors that promote the evolution or retention of reproductive modes across clades. -
Kenya Soe Ch4 A
PART 2 STATE OF THE ENVIRONMENT 61 CHAPTER BIODIVERSITY4 Introduction The Convention on Biological Diversity (CBD) defi nes biodiversity as Kenya’s rich biodiversity Lead Authors ‘the variability among living organisms from all sources including, can be attributed to a number Ali A. Ali and Monday S. Businge among others, terrestrial, marine and other aquatic ecosystems and of factors, including a long Contributing Authors S. M. Mutune, Jane Kibwage, Ivy Achieng, the ecological complexes of which they are part [and] includes diversity evolutionary history, variable Godfrey Mwangi, David Ongare, Fred Baraza, within species, between species and of ecosystems.’ Biodiversity climatic conditions, and diverse Teresa Muthui, Lawrence M. Ndiga, Nick Mugi therefore comprises genetic and species diversity of animals and plants habitat types and ecosystems. Reviewer as well as ecosystem diversity. Kenya is endowed with an enormous The major biodiversity Nathan Gichuki diversity of ecosystems and wildlife species which live in the terrestrial, concentration sites fall within aquatic and aerial environment. These biological resources are the existing protected areas fundamental to national prosperity as a source of food, medicines, network (national parks, reserves and sanctuaries) which are mostly energy, shelter, employment and foreign exchange. For instance, managed by the Kenya Wildlife Service (KWS). However, over 70 percent agricultural productivity and development are dependent on the of the national biodiversity occurs outside the protected areas. availability of a wide variety of plant and animal genetic resources and In spite of its immense biotic capital, Kenya experiences severe on the existence of functional ecological systems, especially those that ecological and socio-economic problems. -
Environment Statistics Report, 2017 Tanzania Mainland
The United Republic of Tanzania June, 2018 The United Republic of Tanzania National Environment Statistics Report, 2017 Tanzania Mainland The National Environment Statistics Report, 2017 (NESR, 2017) was compiled by the National Bureau of Statistics (NBS) in collaboration with National Technical Working Group on Environment Statistics. The compilation work of this report took place between December, 2016 to March, 2018. Funding for compilation and report writing was provided by the Government of Tanzania and the World Bank (WB) through the Tanzania Statistical Master Plan (TSMP) Basket Fund. Technical support was provided by the United Nations Statistics Division (UNSD) and the East African Community (EAC) Secretariat. Additional information about this report may be obtained from the National Bureau of Statistics through the following address: Director General, 18 Kivukoni Road, P.O.Box 796, 11992 Dar es Salaam, Tanzania (Telephone: 255-22-212-2724; email: [email protected]; website: www.nbs.go.tz). Recommended citation: National Bureau of Statistics (NBS) [Tanzania] 2017. National Environment Statistics Report, 2017 (NESR, 2017), Dar es Salaam, Tanzania Mainland. TABLE OF CONTENTS List of Tables ................................................................................................................................ vi List of Figures ............................................................................................................................... ix List of Maps .................................................................................................................................. -
Ontogenetic Diet Change in the Arthroleptid Frog Schoutedenella Xenodactyloides
SHORTER COMMUNICATIONS Journal of Herpetology, Vol. 40, No. 3, pp. 388–394, 2006 Copyright 2006 Society for the Study of Amphibians and Reptiles Ontogenetic Diet Change in the Arthroleptid Frog Schoutedenella xenodactyloides 1,2 3 DAVID C. BLACKBURN AND CORRIE S. MOREAU 1Department of Herpetology, Museum of Comparative Zoology, Harvard University, Cambridge, Massachussetts 02138, USA; E-mail: [email protected] 3Department of Entomology, Museum of Comparative Zoology, Harvard University, Cambridge, Massachussetts 02138, USA ABSTRACT.—Anuran amphibians are important consumers of arthropods in tropical ecosystems. Previous research has indicated that very small, terrestrial frogs, especially juveniles, largely consume small leaf litter arthropods. To date, few studies have examined diet in African anurans, and no studies exist of ontogenetic change in prey composition for any African frog. We investigated the change in diet that accompanies body size increase in the arthroleptid frog Schoutedenella xenodactyloides (Anura: Ranoidea) from a population located on the Mulanje Massif in Malawi, central Africa. Schoutedenella xenodactyloides is a miniature (, 22 mm snout–urostyle length; SUL), direct-developing frog that is often very abundant and is likely an important consumer of small leaf litter arthropods. Based on examination of stomach and intestinal contents from specimens that span the known range of posthatching body sizes, we document the taxonomic diversity of prey consumed by S. xenodactyloides. We present evidence that S. xenodactyloides exhibits a size-related ontogenetic change in the type and relative proportions of prey taxa. Small frogs (# 13 mm SUL) consume large numbers of collembolans and mites. As frogs attain larger body sizes; ants constitute a larger percentage of the total number of prey consumed; and collembolan and mite consumption falls below 10% of the total prey items. -
Amphibian Diversity in Shimba Hills National Reserve, Kenya: a Comprehensive List of Specimens and Species
Journal of East African Natural History 106(1): 19–46 (2017) AMPHIBIAN DIVERSITY IN SHIMBA HILLS NATIONAL RESERVE, KENYA: A COMPREHENSIVE LIST OF SPECIMENS AND SPECIES Beryl A. Bwong Biogeography Research Group, Department of Environmental Sciences University of Basel, 4056 Basel , Switzerland & Herpetology Section, Zoology Department, National Museums of Kenya P.O Box 40658, 00100 Nairobi, Kenya [email protected] Joash O. Nyamache, Patrick K. Malonza, Domnick V. Wasonga, Jacob M. Ngwava Herpetology Section, Zoology Department, National Museums of Kenya P.O Box 40658, 00100 Nairobi, Kenya [email protected]; [email protected]; [email protected], [email protected] Christopher D. Barratt, Peter Nagel Biogeography Research Group, Department of Environmental Sciences University of Basel, 4056 Basel , Switzerland [email protected]; [email protected] Simon P. Loader Biogeography Research Group, Department of Environmental Sciences University of Basel, 4056 Basel , Switzerland & Life Sciences, The Natural History Museum, London SW7 5BD, UK [email protected] ABSTRACT We present the first annotated amphibian checklist of Shimba Hills National Reserve (SHNR). The list comprises of 30 currently known amphibians (28 anurans and two caecilians), which includes 11 families and 15 genera. In addition, individual records per species, distribution in the reserve and brief remarks about the species are presented. The checklist is based on information from museum collections, field guides, unpublished reports and newly collected field data. We are able to confirm the presence of two Eastern Afromontane species in the SHNR: Scolecomorphus cf. vittatus and Callulina cf. kreffti. The latter has not been recorded since the original collection of a single specimen over 50 years ago. -
Bioseries12-Amphibians-Taita-English
0c m 12 Symbol key 3456 habitat pond puddle river stream 78 underground day / night day 9101112131415161718 night altitude high low vegetation types shamba forest plantation prelim pages ENGLISH.indd ii 2009/10/22 02:03:47 PM SANBI Biodiversity Series Amphibians of the Taita Hills by G.J. Measey, P.K. Malonza and V. Muchai 2009 prelim pages ENGLISH.indd Sec1:i 2009/10/27 07:51:49 AM SANBI Biodiversity Series The South African National Biodiversity Institute (SANBI) was established on 1 September 2004 through the signing into force of the National Environmental Management: Biodiversity Act (NEMBA) No. 10 of 2004 by President Thabo Mbeki. The Act expands the mandate of the former National Botanical Institute to include responsibilities relating to the full diversity of South Africa’s fauna and ora, and builds on the internationally respected programmes in conservation, research, education and visitor services developed by the National Botanical Institute and its predecessors over the past century. The vision of SANBI: Biodiversity richness for all South Africans. SANBI’s mission is to champion the exploration, conservation, sustainable use, appreciation and enjoyment of South Africa’s exceptionally rich biodiversity for all people. SANBI Biodiversity Series publishes occasional reports on projects, technologies, workshops, symposia and other activities initiated by or executed in partnership with SANBI. Technical editor: Gerrit Germishuizen Design & layout: Elizma Fouché Cover design: Elizma Fouché How to cite this publication MEASEY, G.J., MALONZA, P.K. & MUCHAI, V. 2009. Amphibians of the Taita Hills / Am bia wa milima ya Taita. SANBI Biodiversity Series 12. South African National Biodiversity Institute, Pretoria. -
Aspects of the Ecology and Conservation of Frogs in Urban Habitats of South Africa
Frogs about town: Aspects of the ecology and conservation of frogs in urban habitats of South Africa DJD Kruger 20428405 Thesis submitted for the degree Philosophiae Doctor in Zoology at the Potchefstroom Campus of the North-West University Supervisor: Prof LH du Preez Co-supervisor: Prof C Weldon September 2014 i In loving memory of my grandmother, Kitty Lombaard (1934/07/09 – 2012/05/18), who has made an invaluable difference in all aspects of my life. ii Acknowledgements A project with a time scale and magnitude this large leaves one indebted by numerous people that contributed to the end result of this study. I would like to thank the following people for their invaluable contributions over the past three years, in no particular order: To my supervisor, Prof. Louis du Preez I am indebted, not only for the help, guidance and support he has provided throughout this study, but also for his mentorship and example he set in all aspects of life. I also appreciate the help of my co-supervisor, Prof. Ché Weldon, for the numerous contributions, constructive comments and hours spent on proofreading. I owe thanks to all contributors for proofreading and language editing and thereby correcting my “boerseun” English grammar but also providing me with professional guidance. Prof. Louis du Preez, Prof. Ché Weldon, Dr. Andrew Hamer, Dr. Kirsten Parris, Prof. John Malone and Dr. Jeanne Tarrant are all dearly thanked for invaluable comments on earlier drafts of parts/the entirety of this thesis. For statistical contributions I am especially also grateful to Dr. Andrew Hamer for help with Bayesian analysis and to the North-West Statistical Services consultant, Dr. -
Sequencing of Mitochondrial DNA with Long Repetitive Regions and Detection of the Frog Lineages of Large Mt Genome Showing Reduction of Purifying Selection
Prime Archives in Genetics: 2nd Edition Book Chapter Sequencing of Mitochondrial DNA with Long Repetitive Regions and Detection of the Frog Lineages of Large mt Genome Showing Reduction of Purifying Selection Ryosuke Kakehashi1, Keitaro Hemmi2, Chiaki Kambayashi1 and Atsushi Kurabayashi1* 1Faculty of Bio-Science, Nagahama Institute of Bio-Science and Technology, Japan 2Amphibian Research Center, Hiroshima University, Japan *Corresponding Author: Atsushi Kurabayashi, Faculty of Bio- Science, Nagahama Institute of Bio-Science and Technology, Japan Published July 12, 2021 This Book Chapter is a republication of an article published by Atsushi Kurabayashi, et al. at International Journal of Genomics in January 2020. (Keitaro Hemmi, Ryosuke Kakehashi, Chiaki Kambayashi, Louis Du Preez, Leslie Minter, Nobuaki Furuno, Atsushi Kurabayashi. Exceptional Enlargement of the Mitochondrial Genome Results from Distinct Causes in Different Rain Frogs (Anura: Brevicipitidae: Breviceps). International Journal of Genomics. Volume 2020, Article ID 6540343, 12 pages. https://doi.org/10.1155/2020/6540343) How to cite this book chapter: Ryosuke Kakehashi, Keitaro Hemmi, Chiaki Kambayashi, Atsushi Kurabayashi. Sequencing of Mitochondrial DNA with Long Repetitive Regions and Detection of the Frog Lineages of Large mt Genome Showing Reduction of Purifying Selection. In: Fekadu Gadissa, editor. Prime Archives in Genetics: 2nd Edition. Hyderabad, India: Vide Leaf. 2021. 1 www.videleaf.com Prime Archives in Genetics: 2nd Edition © The Author(s) 2021. This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract The mitochondrial (mt) genome of the bushveld rain frog (Breviceps adspersus, family Brevicipitidae, Afrobatrachia) is the largest (28.8 kbp) among the vertebrates investigated to date. -
Nansei Islands Biological Diversity Evaluation Project Report 1 Chapter 1
Introduction WWF Japan’s involvement with the Nansei Islands can be traced back to a request in 1982 by Prince Phillip, Duke of Edinburgh. The “World Conservation Strategy”, which was drafted at the time through a collaborative effort by the WWF’s network, the International Union for Conservation of Nature (IUCN), and the United Nations Environment Programme (UNEP), posed the notion that the problems affecting environments were problems that had global implications. Furthermore, the findings presented offered information on precious environments extant throughout the globe and where they were distributed, thereby providing an impetus for people to think about issues relevant to humankind’s harmonious existence with the rest of nature. One of the precious natural environments for Japan given in the “World Conservation Strategy” was the Nansei Islands. The Duke of Edinburgh, who was the President of the WWF at the time (now President Emeritus), naturally sought to promote acts of conservation by those who could see them through most effectively, i.e. pertinent conservation parties in the area, a mandate which naturally fell on the shoulders of WWF Japan with regard to nature conservation activities concerning the Nansei Islands. This marked the beginning of the Nansei Islands initiative of WWF Japan, and ever since, WWF Japan has not only consistently performed globally-relevant environmental studies of particular areas within the Nansei Islands during the 1980’s and 1990’s, but has put pressure on the national and local governments to use the findings of those studies in public policy. Unfortunately, like many other places throughout the world, the deterioration of the natural environments in the Nansei Islands has yet to stop. -
Ecology and Demography of the Critically Endangered Kandian Torrent Toad Adenomus Kandianus: a Long-Lost Endemic Species of Sri Lanka
Ecology and demography of the Critically Endangered Kandian torrent toad Adenomus kandianus: a long-lost endemic species of Sri Lanka S URANJAN K ARUNARATHNA,SUJAN H ENKANATHTHEGEDARA,DINESH G ABADAGE M ADHAVA B OTEJUE,MAJINTHA M ADAWALA and T HILINA D. SURASINGHE Abstract The tropical island nation of Sri Lanka is a bio- Keywords Adenomus kandianus, Amphibia, Bufonidae, diversity hotspot with a high diversity and endemism of am- conservation, Critically Endangered, montane streams, phibians. The endemic, stream-dwelling Kandian torrent Sri Lanka, tropical rainforests toad Adenomus kandianus is Critically Endangered and was considered to be extinct until its rediscovery in . The species is now known from two localities in tropical Introduction montane forests. We conducted a -year study using tran- sect surveys and opportunistic excursions to assess habitat he South Asian tropical island of Sri Lanka is rich in associations, demographics and abundance of A. kandianus Tamphibian diversity (Meegaskumbura et al., ). in and around Pidurutalagala Conservation Forest. We re- Of the country’s described amphibian species corded a mean of . post-metamorphs per year, with a (c. %) are endemic and . % are restricted to rainforests density of , individual per m , with occurrence within (Surasinghe, ; Wickramasinghe et al., ). Sri Lanka’s a narrow extent (c. km ) of the stream channel. amphibians are threatened by deforestation, environmental Behaviour and microhabitat selection varied depending on pollution and road traffic (Pethiyagoda et al., ; sex and stage of maturity. The species preferred moderately Karunarathna et al., ). These anthropogenic stressors have sized montane streams with rocky substrates and woody contributed to the extinction of amphibian species, and de- debris, colder temperatures, and closed-canopy, intact ri- clining populations of nearly half of the extant species (MOE, parian forests. -
Real-Time DNA Barcoding in a Remote Rainforest Using Nanopore Sequencing
bioRxiv preprint doi: https://doi.org/10.1101/189159; this version posted September 15, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Real-time DNA barcoding in a remote rainforest using nanopore sequencing 2 3 Aaron Pomerantz1,*, Nicolás Peñafiel2, Alejandro Arteaga3, Lucas Bustamante3, Frank Pichardo3, 4 Luis A. Coloma4, César L. Barrio-Amorós5, David Salazar-Valenzuela2, Stefan Prost 1,6,* 5 6 1 Department of Integrative Biology, University of California, Berkeley, CA, USA 7 2 Centro de Investigación de la Biodiversidad y Cambio Climático (BioCamb) e Ingeniería en 8 Biodiversidad y Recursos Genéticos, Facultad de Ciencias de Medio Ambiente, Universidad 9 Tecnológica Indoamérica, Machala y Sabanilla, Quito, Ecuador 10 3 Tropical Herping, Quito, Ecuador 11 4 Centro Jambatu de Investigación y Conservación de Anfibios, Fundación Otonga, Quito, 12 Ecuador 13 5 Doc Frog Expeditions, Uvita, Costa Rica 14 6 Program for Conservation Genomics, Department of Biology, Stanford University, Stanford, CA, 15 USA 16 17 * Corresponding authors: [email protected] (A. Pomerantz) and 18 [email protected] (S. Prost) 19 20 Abstract 21 Advancements in portable scientific instruments provide promising avenues to expedite 22 field work in order to understand the diverse array of organisms that inhabit our planet. 23 Here we tested the feasibility for in situ molecular analyses of endemic fauna using a 24 portable laboratory fitting within a single backpack, in one of the world’s most imperiled 25 biodiversity hotspots: the Ecuadorian Chocó rainforest.