Hindawi Oxidative Medicine and Cellular Longevity Volume 2019, Article ID 7283104, 20 pages https://doi.org/10.1155/2019/7283104

Research Article The Alexipharmic Mechanisms of Five Licorice Ingredients Involved in CYP450 and Nrf2 Pathways in Paraquat-Induced Mice Acute Lung Injury

Zi-Jing Liu,1,2 Jing Zhong,1 Mei Zhang,1 Ze-Hui Chen,1 Ji-Ye Wang,1 Han-Ying Chen,1,2 Xiao-Qin Wang,1,2 and Bo Zhang 1,2

1Key Laboratory of Xinjiang Endemic Phytomedicine Resources, Ministry of Education, School of Pharmacy, Shihezi University, Shihezi 832002, China 2Pharmacology Department, School of Pharmacy, Shihezi University, Shihezi 832002, China

Correspondence should be addressed to Bo Zhang; [email protected]

Received 21 May 2018; Revised 30 September 2018; Accepted 3 December 2018; Published 28 April 2019

Academic Editor: Pablo Muriel

Copyright © 2019 Zi-Jing Liu et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Oxidative stress is an important mechanism in acute lung injury (ALI) induced by paraquat (PQ), one of the most widely used herbicides in developing countries. In clinical prophylaxis and treatment, licorice is a widely used herbal medicine in China due to its strong alexipharmic characteristics. However, the corresponding biochemical mechanism of antioxidation and detoxification enzymes induced by licorice’s ingredients is still not fully demonstrated. In this study, the detoxification effect of licorice was evaluated in vivo and in vitro. The detoxification and antioxidation effect of its active ingredients involved in the treatment was screened systematically according to Absorption, Distribution, Metabolism, and Excretion (ADME): predictions and evidence-based literature mining methods in silico approach. Data shows that licorice alleviate pulmonary edema and fibrosis, decrease Malondialdehyde (MDA) contents and increase Superoxide Dismutase (SOD) activity in PQ-induced ALI mice, protect the morphologic appearance of lung tissues, induce 3A4 (CYA3A4) and Nuclear factor erythroid 2-related factor 2 (Nrf2) expression to active detoxification pathways, reduce the accumulation of PQ in vivo, protect or improve the liver and renal function of mice, and increase the survival rate. The 104 of PPI network contained all targets of licorice ingredients and PQ, which displayed the two redox regulatory enzymatic group modules (CYP450) and Nrf2 via a score-related graphic theoretic clustering algorithm in silico. According to ADME properties, glycyrol, isolicoflavonol, licochalcone A, 18beta-glycyrrhetinic acid, and licoisoflavone A were employed due to their oral bioavailability OB ≥ 30%, drug-likeness DL ≥ 0 1, and being highly associated with CYP450 and Nrf2 pathways, as potential activators to halt PQ-induced cells death in vitro. Both 3A4 inhibitor and silenced Nrf2 decreased the alexipharmic effects of those ingredients significantly. All these disclosed the detoxification and antioxidation effects of licorice on acute lung injury induced by PQ, and glycyrol, isolicoflavonol, licochalcone A, 18beta-glycyrrhetinic acid, and licoisoflavone A upregulated CYP450 and Nrf2 pathways underlying the alexipharmic mechanisms of licorice.

1. Introduction accounts for 300,000 deaths occurring in the Asia-Pacific region alone each year [1]. The diagnosis of PQ poisoning Paraquat (N,N-dimethyl-4,4′-bipyridinium dichloride; PQ) mainly is according to the PQ concentration in the blood, is one of the most widely used herbicides in developing coun- lung X-ray, and dithionite urine test [2]. With the develop- tries. However, it is also a highly toxic compound caused by ment of science, a GC-MS-based metabolomic approach pulmonary impairment, leading to irreversible pulmonary was applied to assess the metabolite changes in human fibrosis and characteristically occurred between several days plasma following PQ poisoning [3]. According to the litera- and 3 weeks after administration or ingestion, which ture, SVM discrimination model performed with high 2 Oxidative Medicine and Cellular Longevity classification accuracy can be applied to distinguish the PQ “Shang Han Za Bing Lun” and reduces toxicity of other drugs poisoned patients from a healthy person [3]. Also a potential in prescriptions. There are many active components in lico- use of ELM methods for PQ poisoning detection in biomed- rice, but the mechanism of detoxification is unknown. At ical applications, which possess high classification accuracy, present, many components have been proved to exhibit AUC, sensitivity, and specificity, can be applied in clinical detoxification activity; triterpenoids and flavonoids in the lic- practice to distinguish the PQ-poisoned patients from orice are responsible for combining with toxic substances as healthy persons [4]. But many of them require a long time, their alexipharmic mechanism [16]. Glycyrrhizin obviously money, or staff. At present, a simple but reliable highly sensi- induces CYP3A activity in vivo [17]. 18β-Glycyrrhizinate is tive fluorescence-enhancing method has been developed for responsible for the concentration-dependent induction of the detection of PQ concentration by using host-guest chem- CYP3A [18]. However, in vivo data disclosed medicagenin istry with cucurbit[8]uril [2]. Management strategies for PQ (II) and munchiwarin (III) showing low oral bioavailability; poisoning include extracorporeal elimination, immunosup- other active molecules should be searched to take the alexi- pressants, antioxidants, and hemoperfusion (HP) within pharmic role in licorice [19]. 2-4 h after intoxication [6–8]. However, there is no sufficient Nrf2 is a basic leucine zipper transcription factor and evidence indicating good clinical outcomes, and mortality plays a key role in cellular defenses against electrophile rates remain very high despite current treatment methods induced-oxidative stress [20]. According to the literature, [5, 9]. Thus, it is important to find an antidote and identify the active ingredients in licorice, such as isoliquiritigenin, a better therapeutic mechanism of PQ poisoning. stimulate detoxification system via Nrf2 activation, which Considering the strong detoxification of the liver, the could be a potential protective mechanism of licorice [21]. induction of drug-metabolizing enzymes and efflux trans- A number of compounds such as licochalcone A [22], porters promotes the detoxification and excretion of toxic licochalcone B, glycyrrhetinic acid, glycyrrhizin, and isoli- substances, which is considered to be one of the important quiritigenin significantly activate Nrf2 [23], induce Nrf2 pathways in drug detoxification [10]. Typical phase I meta- expression [21], and were potent Nrf2 activators. Further- bolic enzymes are cytochrome P450 (phase I metabolic more, drug-metabolizing enzymes are essential for most of enzymes), ALDH, and so on. In P450, the actual effects of the biotransformation steps involving xenobiotics and endog- the accumulation of toxic metabolic products of drugs and enous molecules [24]. Recent studies have found that Nrf2 the detoxification process depend on the balance between regulates the expressions of a variety of drug-metabolizing phase I and phase II enzymes. In the literature, acute para- enzymes (phase II metabolic enzymes) and transporters quat poisoning may induce the activities of CYP2C19 and in vivo and also the primary factor inducing the cell survival inhibit the activities of CYP2B6, CYP2C9, CYP2D6, and system under Glutathione (GSH) depletion [21, 25]. At pres- CYP3A4 in rats [11]. This may provide a reasonable ent, hundreds of active ingredients in licorice have been iso- suggestion for the development of new drugs for acute lated and identified. Many of those molecules have relatively paraquat poisoning. fast metabolism and low bioavailability in the liver, Oxidative stress is also thought to participate in the although their content is high, the final duration is short. mechanism of PQ-induced ALI [5]. PQ can enter cells and According to ADME, there are still many compounds participate in a series of redox reactions. In this process, PQ including 18beta-glycyrrhetinic acid, glycyrol, licoisoflavone consumes nicotinamide adenine dinucleotide phosphate A, and isolicoflavonol with high oral bioavailability values and cytochrome P450 reductase, causing oxidative stress in licorice. But there is hardly any research on the potential reaction. MDA level can indirectly reflect the degree of per- detoxification value of these molecules. Molecules with oxidation, and elevated MDA level also causes cell metabo- good ADME properties are the important standard for lism disorders. SOD is the main endogenous antioxidant drugs. It is urgent to find the active ingredients with relative ff ⋅- which can e ectively remove O2 and reduce oxidation reac- higher OB and higher activities targeting both CYP450 and tions, causing the subsequent acute inflammatory response. Nrf2/ARE metabolic pathways in the treatment of PQ When these antioxidants are imbalanced, there will be airway poisoning [24]. inflammation, airway hyperresponsiveness and tissue dam- Systems biology, such as network pharmacology, pro- age, neutrophil infiltration, and ultimately the formation of motes an understanding of the function and behavior of a bio- lung injury [12]. It has been found that Nrf2, an important logical system [26], so did the evidence-based analytic transcription factor of oxidative stress, is known to be essen- platforms and network science algorithm models [27, 28]. tial for the antioxidant responsive element-mediated induc- Those technological platforms provide holistic approaches tion of oxidative stress enzyme genes and plays an to study the essence of herb medicine and the functions of important role in the development of PQ-induced ALI. Many natural products in silico [26]. The liver is where drugs are studies showed their results by inhibiting oxidative stress to metabolized; it is the main active place of drug-metabolizing slow down the process of ALI [13]. enzymes, and HepG2-derived hepatocellular carcinoma is a Detoxification is an important mechanism involved in hepatoblastoma suitable for the study of hepatocyte metabo- polypharmacology [14]. And it may be beneficial for detoxi- lism and detoxification. A549 cells are widely used in the fication by reducing oxidative stress, minimizing toxicity by model of type II pulmonary epithelial cells in vitro and as regulating the expression CYP450 mRNAs [15]. Licorice is transfection hosts. The main target organ of PQ poisoning is one of the most widely used herbal medicines in China due the lung, and A549 cells are adenocarcinoma and human to its strong alexipharmic characteristics. It appeared in alveolar basal epithelial cells. And type II alveolar Oxidative Medicine and Cellular Longevity 3 epithelial cells are specific targets of paraquat toxicity [29]. 2.3. Network Construction of Interaction in Licorice So, A549 cells and HepG2 cells were chosen to explore the Ingredients and Paraquat. The ingredients of OB ≥ 30% and detoxification properties of licorice in vitro. In the present DL ≥ 0 1 in licorice through TCMSP database (Supplemen- study, we aim to evaluate the detoxification and antioxida- tary Table 1) and PQ were submitted to the Agilent tion effects of licorice in vivo and characterize the active Literature Search software v.3.1.1 (http://www.agilent.com/ ingredients and their pharmacological actions in silico and labs/research/litsearch.html), which is a powerful automatic in vitro underlying the mechanism of licorice detoxification. metasearch tool for querying multiple text-based PubMed and USPTO, for associations among genes of interest and constructing a network. A graph theoretic clustering 2. Methods and Materials algorithm, MCODE (Molecular Complex Detection), was used to analyze the characteristics of the networks. The 2.1. Materials. Licorice extract (Cat#L9030) is a water-soluble equation i =2n/ ki ki − 1 was used, where ki is the vertex powder, extracted from the dried roots and stems of size of the neighborhood of vertex i and n is the number of G. uralensis Fisch., G. inflate Bat., and G. glabra L. edges in the neighborhood [28]. Interactomes with a (Glycyrrhiza Linn., Leguminosae) by water; glycyrol (GLL, module score ≥ 3.3 and at least two nodes were selected as purity ≥ 99%, PubChem CID: 5320083), isolicoflavonol significant predictions [27]. STRING (accessed on May 1, (ILF, purity ≥ 98%, PubChem CID: 5318585), licochalcone 2015, http://string-db.org/) was used to analyze the results A (LCA, purity ≥ 99%, PubChem CID: 5318998), licoisofla- of oxidoreductase. vone A (LIA, purity ≥ 98%, PubChem CID: 5281789), 18beta-glycyrrhetinic acid (18β-GA, purity ≥ 99%, PubChem 2.4. ADME Property Prediction of Licorice Ingredients. To CID: 10114), and MTT [3-(4.5-dimethylthiazol-2-yl)-2.5- identify the detoxifying active ingredients of licorice, we used diphenyl tetrazolium bromide] and Modified Masson’s the TCMSP database to predict OB in vivo (%F) and DL of Trichrome Stain Kit were purchased from Solarbio Co. Ltd. the ingredients. Using this database, we chose those with (Beijing, China). The cDNA amplification kit, primers, and OB ≥ 30% and DL ≥ 0 1 as the candidate ingredients, thus RNA extraction kit were purchased from Shanghai Sangon reducing the number of original chemicals from the lico- Co. Ltd. (Shanghai, China). Dulbecco’s Modified Eagle’s rice to a smaller subset significantly [31]. Medium Nutrient Mixture F-12 (DMEM/F12) and Mini- mum Essential Medium (MEM) were purchased from Gibco 2.5. Evidence-Based Finding of Potential Molecules by BRL (Grand Island, NY, USA). All of the primary antibodies QSAR and Molecular Docking Study. The quantitative CYP3A4, Nrf2, glyceraldehyde-3-phosphate dehydrogenase structure-activity relationship (QSAR) model was used as (GAPDH), anti-mouse, and anti-rabbit secondary antibodies a tool to screen for ingredients depleted of GSH. Organiza- were purchased from Cell Signaling Technology Inc. tion for Economic Cooperation and Development QSAR (Danvers, MA, USA). Ketoconazole (KZ, purity ≥ 98%, (v. 3.2.0, 2013, http://www.qsartoolbox.org/) was used to PubChem CID: 3823) was purchased from Shanghai Yuanye quantitatively research the interactions of small organic Biological Industries Co. Ltd. (Shanghai, China). The human molecular substance with biomacromolecules. The module type II alveolar adenocarcinomic basal epithelial cells (A549) of protein-binding potency was used in the current study [32]. and Human hepatocellular liver carcinoma cell (HepG2) Molecular docking was used as a tool to screen for ingre- were purchased from the Cancer Cell Repository (Shanghai dients that have strong energy binding to CYP3A4, which is a Cell Bank, Shanghai, China). Nrf2 knockdown A549 cells member of the cytochrome P450 family of oxidizing were transfected with Nrf2shRNA [30]. Paraquat (PQ, enzymes. Several other members of this family are also Sigma-Aldrich Company) (PubChem CID: 15938) and involved in drug metabolism, but CYP3A4 is the most com- methylene blue (MB) were purchased from Sigma-Aldrich. mon and the most versatile one [33]. Ingredients in licorice, The MDA kit, SOD kit, AST/GOT kit, ALT/GPT kit, CRE together with CYP3A4 to carry out virtual molecular dock- kit, and BUN kit were purchased from Nanjing Jiancheng ing, use carbamazepine as a positive control. Docking and Bioengineering Institute (Jiangsu, China). Dexamethasone scoring of the ingredients in licorice were performed using Sodium Phosphate Injection was purchased from Tianjin Surflex-Dock in SYBYL -X 2.0. The models of the ingredients King York Group Co. Ltd. Cucurbit[8]uril was obtained by were then docked into the crystal structure protein model Prof. Shiguo Sun. with Surflex-Dock (default settings with reign flexibility sampled), and the resulting 10 best poses were sorted by the fl 2.2. Collection and Library Construction of Active Ingredients Sur ex-Dock scoring function in -log10(Kd) units to simulate of Licorice. The list of licorice chemicals used in the treatment binging affinities [34]. Four ingredients were selected accord- of respiratory diseases was collected from the literature, the ing to these filtering criteria. Traditional Chinese Medicine Systems Pharmacology Data- base and Analysis Platform (TCMSP, accessed on May 1, 2.6. Cell Lines, Culture, and Treatment. A549 and HepG2 2015, http://lsp.nwu.edu.cn/tcmsp.php), and the Chinese cells were maintained in DMEM/F12 and MEM, respectively, Academy of Sciences’ Chemistry Database (accessed on containing 10% fetal bovine serum, 100 U/mL penicillin, and ° May 1, 2015, http://www.organchem.csdb.cn). The chemical 100 U/mL streptomycin at 37 C and 5% CO2 in a suitable structures were obtained from the Chemical Book (http:// incubator. A549 cells and Nrf2 knockdown A549 cells were www.chemicalbook.com). seeded in 96-well cell plates (5×104/well), respectively, and 4 Oxidative Medicine and Cellular Longevity grown for 12 h. PQ (0-40 μM) was mixed with the cells and 2016-0003). The animals were randomly divided into 6 incubated for 24 h. KZ was the CYP3A4 inhibitor. HepG2 groups (n =8) as follows: (1) control group, (2) PQ group, cells were seeded in 96-well cell plates (5×104/well) and (3) dexamethasone group, (4) licorice extract (20 mg/kg), grown for 12 h. After that they were pretreated with 10 μM (5) licorice extract (40 mg/kg), and (6) licorice extract KZ for 4 h and exposed to 0-40 μM PQ for 24 h. Cell prolifer- (60 mg/kg). The animals were housed in a ventilated room ° ation was determined by MTT assay. at 22 ± 2 C with a 12 h dark/12 h light cycle and provided A549 cells and HepG2 cells were seeded in 96-well cell with free access to fresh water and standard rodent chow. plates, respectively (5 × 104/well), and grown for 12 h, after Mice in the control group received saline solution. In the they were pretreated with 10 μM GLL, ILF, LCA, LIA, and PQ group, mice received PQ (45 mg/kg, i.g.). Licorice extract 18β-GA for 4 h and exposed to 0-40 μM PQ for 24 h. Cell (20, 40, and 60 mg/kg) groups were treated with licorice proliferation was determined by MTT assay. extract (20, 40, and 60 mg/kg/d, i.g.) 1 h before mice received A549 and HepG2 cells were seeded in 96-well cell plates PQ. The dexamethasone (DXMS) group was treated with (5×104/well) and grown for 12 h, after which 0–100 μM DXMS (0.5 mg/kg/d, ip) 1 h before mice received PQ. The GLL, ILF, LCA, LIA, and 18β-GA were separately mixed with PQ group, PQ+licorice extract group, and DXMS group were the cells and incubated for 24 h. Cell proliferation was deter- treated once with an intragastric infusion of PQ solution mined by MTT assay. (40 mg/kg); licorice extract and DXMS were dissolved in Survival fraction = mean OD in text wells - mean OD in saline (NaCl 0.9%). free cell wells/mean OD in control wells - mean OD in free The survival of the mice in each group was observed over wells [35]. eight observation periods: 0, 1, 2, 3, 4, 5, 6, and 7 days after treatment administration. Mice were anaesthetized after 2.7. Reverse Transcription Polymerase Chain Reaction and treatment for 7 days; lung tissues, liver tissues, and renal tis- Western Blot Analysis. A549 cells were plated in six-well tis- sues were collected. And blood samples were then collected sue culture plates. 5 μM and 10 μM GLL, ILF, LCA, and from the inferior vena cava from each group and stored at ° LIA and 50 μM and 100 μM18β-GA were separately incu- 4 C overnight for serum preparation and PQ concentration bated with the cells for 8 h. The levels of Nrf2, glutathione detection. Weighing the lung tissue of mice, use lung reductase (GR), glutathione peroxidase (GPX), and NAD W/D = wet weight/dry weight to calculate the lung W/D (P)H:quinone oxidoreductase (NQO1) mRNA were analyzed in mice. Histological examination of the lung, liver, and by Real-Time PCR (RT-PCR). renal tissues from each group was performed to evaluate Nrf2 knockdown A549 cells were plated in six-well tissue tissue damage. culture plates, after which 10 μM GLL, ILF, LCA, and LIA Parts of lung tissues were used for measuring oxidative and 50 μM18β-GA were separately incubated with the cells stress biomarkers. Malondialdehyde (MDA) level and Super- for 8.0 h. The levels of glutamate cysteine ligase modifier oxide Dismutase (SOD) activity were determined according (GCLM) and NQO1 mRNA were analyzed using RT-PCR. to the thiobarbituric acid (TBA) method and xanthine HepG2 cells were plated in six-well tissue culture plates oxidase method as manufacturer’s instructions (Nanjing and grown for 12 h, after which 10 μM GLL, ILF, LCA, and Jiancheng Bioengineering Institute, China). The levels of LIA and 50 μM18β-GA were separately incubated with the CYP3A4 and Nrf2 were analyzed by western blotting cells for 24 h. The levels of CYP3A4 mRNA were analyzed according to manufacturer’s instructions [36]. Serum was by RT-PCR [36]. used for measuring renal and liver function evaluation. Quantitative real-time RT-PCR was performed using a Urea nitrogen (BUN), creatinine (CRE), aspartate amino- single-tube SYBR Green kit (QIAGEN, USA), Rotor Gene transferase (AST/GOT), and alanine aminotransferase Q Real-Time PCR system (Rotor Gene Q, QIAGEN, USA), (ALT/GPT) levels were determined according to the urease and specific primer sets (the same primers used in the con- and sarcosine oxidase methods as manufacturer’s instruc- ventional RT-PCR). Only experiments in which a distinct tions (Nanjing Jiancheng Bioengineering Institute, China). single peak was observed with a melting temperature According to the literature, for fluorescence detecting of different from that of the no-template control were ana- paraquat using host-guest chemistry with cucurbit[8]uril, lyzed. The relative amount of target mRNA was calcu- we used the methods in [2]; 2MB@CB[8] (200 μL, 5 μM) –△△ lated by the 2 Ct method. Each sample was analyzed was added into 0.1 mL serum of mice to determine the con- using glyceraldehyde-3-phosphate dehydrogenase (GAPDH) centration of PQ in serum. According to the literature, the as an endogenous reference gene for mRNA normalization. fluorescence reaction of 2MB@CB[8] and PQ also occurs in HepG2 cell was treated with 10 μM GLL, ILF, LCA, and live mice. After injecting 2MB@CB[8] solution into mice LIA and 50 μM18β-GA separately for 24 h, after which the (0.1-0.2 mL), real-time fluorescence imaging of PQ in vivo cells were harvested and lysed in RIPA buffer. The levels of was carried out to demonstrate the residual of PQ in each CYP3A4 were analyzed by western blot with primary anti- group of mice by using a NightOWL II LB 983 system body (1 : 1000) and its corresponding secondary antibody equipped with a NC 100 CCD deep-cooled camera (Berthold (1 : 10000) according to manufacturer’s instructions [36]. Technologies, Bad Wildbad, Germany).

2.8. Animal Treatments. KM mice (6-8 weeks old) were purchased from Xinjiang Medical University (Xinjiang, 2.9. Statistical Analysis. Statistical analysis was conducted China), weighing 18-25 g (animal qualified number: SCXK with SPSS version 18.0 software and GraphPad Prism 5, Oxidative Medicine and Cellular Longevity 5 using one-way analysis of variance (ANOVA) for multiple 1.0 group comparisons or Student’s t-test for two-group com- parisons. All data are expressed as the mean ± standard error 0.8 [37]. P <005 was considered statically significant. 0.6 ## 3. Results ## 0.4 # th 3.1. Survival Rate of Mice. On the 7 day, after PQ intoxica- Survival rate fi tion, licorice extract treatment had signi cantly increased the 0.2 ⁎⁎ survival rate at day 8, with 60% survival in the PQ+licorice extract group (P <001) compared with 20% in the PQ 0.0 group. Licorice extract treatment improved the survival rate 0 2 4 6 8 10 to 60% in the PQ+licorice extract group compared with Time (D) 20% in the PQ group; the improvements were statistically significant (Figure 1). This result confirmed the protective CTR LE(L) effect of licorice on mortality in mice with PQ poisoning. MOD LE(M) DXMS LE(H)

3.2. Licorice Attenuates the PQ-Induced Pulmonary Damage. Figure ff We used H&E staining to display pulmonary damages in 1: Survival rate. E ects of licorice on survival rate of PQ-induced ALI mice. Mice were given licorice extract (20, 40, and each group of mice (Figure 2). In the control group, the alve- 60 mg/kg) 1 h prior to administration of PQ. Record the number of oli showed clear boundaries and intact structures. Thicken- fi fl deaths after the mice were poisoned by PQ. The Kaplan-Meier ing of alveolar walls and in ltration of in ammatory cells program was utilized to compare the differences in survival rates were not observed nor were exudates from alveolar cavities. between groups. The values presented are the means ± SEMs In the PQ group, incrassation was revealed in alveolar sep- (n =8 in each group). Compared with the CTR group, ∗P <005, tum accompanied with discontinuous destruction. A large ∗∗P <001; compared with the MOD group, #P <005, ##P <001. number of inflammatory cells such as neutrophils, macro- phages, and lymphocytes infiltrated the alveolar cavities. to be increased in the model group; licorice extract Thickening alveolar walls, collapsed alveolar diffused pulmo- (60 mg/kg) decreased the level of MDA and increased the nary hemorrhage, and destruction of alveolar epithelial cells activity of SOD significantly. were observed significantly. In licorice extract-treated groups, compared with the PQ group, pulmonary damages were sig- 3.5. Licorice Alleviated Pulmonary Fibrosis in Mice Induced nificantly reduced with administrated dosages from 20 to by PQ. In order to evaluate pulmonary fibrosis degree in 60 mg/kg. The pathological thickening of the alveolar septum mice, western blotting was used to measure the level of by PQ was alleviated. Inflammatory infiltration was signifi- TGF-β1, which is a potent profibrotic cytokine, in the foci cantly limited in the alveolar cavities. Few atrophied alveolar containing these activated fibroblasts [38]. Compared with structures and thickened alveolar septum were observed. the control group, PQ significantly increased the level of β P <001 3.3. Licorice Reduced PQ-Induced Pulmonary Edema of Mice. TGF- 1 expression ( ); after the treatment of licorice β Lung wet/dry weight ratio is used to measure the edema extract (60 mg/kg), TGF- 1 expression was decreased P <001 degree of lung tissue in mice. Compared with the control, remarkably ( ). It suggests that licorice reduces pul- fi the lung wet/dry weight ratios were significantly increased monary brosis after PQ intake (Figure 5). after PQ gavage (P <001). The increase of W/D was signifi- In order to show more directly that licorice alleviated pul- fi cantly reduced by licorice extract treatment at high doses monary brosis after PQ intake, Masson trichrome staining (P <001) (Figure 3). This result showed licorice extract was used to assess collagen deposition. Masson trichrome fi reduce pulmonary edema in mice in different degrees. staining of formalin- xed tissues revealed greater amounts of collagen deposition in the lung tissues of the model group 3.4. Licorice Reduced PQ-Induced Oxidative Stress in the Lung (Figure 6). Fibrosis was decreased in a dose-dependent man- Tissues of Mice. To evaluate the effect of licorice on ner after the treatment of licorice extract. PQ-induced oxidative stress damage, the level of MDA and SOD was measured which were biological indicators of oxi- 3.6. Licorice Induced CYP3A4 and Nrf2 Expression to dative stress. MDA level in the model group was significantly Detoxify the Toxicity Induced by PQ. To evaluate the detoxi- higher than that in the control group (P <001). Compared fication effect of licorice on PQ-induced lung injury, the level with the PQ group, the MDA level in the licorice extract of Nrf2 and CYP3A4 expression of lung tissues and CYP3A4 (20, 40, and 60 mg/kg) groups, especially in the licorice expression of liver tissues was measured by western blotting. extract (60 mg/kg) group, was much lower (P <001). Compared with the control group, PQ decreased CYP3A4 According to Figure 4, the activity of SOD in the model and Nrf2 expression remarkably (P <001) in the model group was significantly lower than that in the control group group. Nrf2 expression was increased after the treatment of (P <001). Compared with the PQ group, the licorice extract licorice extract (60 mg/kg) significantly (P <001). It is spec- (60 mg/kg) group has increased SOD activity (P <005) ulated that the activation of Nrf2 can induce the activation of remarkably. As we can see, oxidative stress has been shown detoxification pathways. CYP3A4 expression was increased 6 Oxidative Medicine and Cellular Longevity

(a) (b) (c)

(d) (e) (f)

Figure 2: Lung histological examination from H&E staining. Histological appearance of the lung sections from the (a) normal group, (b) model group, (c) DXMS group, (d) licorice extract (20 mg/kg), (e) licorice extract (40 mg/kg), and (f) licorice extract (60 mg/kg). Widespread thickening of the alveolar septum and infiltration of inflammatory cells were observed in the model group. Treatment with licorice extract reduced the histological alterations induced by PQ. The lung sections were analyzed by hematoxylin and eosin (H&E) staining (magnification is ×400). fl 10 According to real-time in vivo uorescence imaging of ∗∗ PQ in the living mice (Figure 7), it can be seen that PQ can 8 be readily tracked by using 2MB@CB[8] in living mice. The ) –1 # fluorescence spectra showed that the accumulation of PQ in –1 6 ## ## the licorice extract (60 mg/kg) group was significantly lower 4 than that in the control group. (mg· mg (mg· Lung W·D Lung 2 3.8. Licorice Improves Liver and Renal Function in 0 PQ-Poisoned Mice. The levels of aspartate aminotransferase (AST/GOT) and alanine aminotransferase (ALT/GPT) in CTR LE(L) MOD

LE(H) serum can help people diagnose if the liver is injured or LE(M) DXMS PQ (40 mg·kg–1) not. When the liver is diseased or damaged, additional AST and ALT are released into the bloodstream, causing levels Figure 3: Licorice extract reduces lung W/D in mice. Effects of of the enzyme to rise. Therefore, the amount of AST and licorice on the lung W/D ratio of PQ-induced ALI mice. Mice ALT in the blood is directly related to the extent of the tissue were given licorice extract (20, 40, and 60 mg/kg) 1 h prior to damage [39]. According to the elevated levels of AST/GOT administration of PQ. The lung W/D ratio was determined 7 and ALT/GPT in mice in the model group, the liver function days after the PQ challenge. The values presented are the of mice after intake of paraquat was damaged (P <001 means ± SEMs (n =8 in each group). Compared with the CTR ). group, ∗P <005, ∗∗P <001; compared with the MOD group, After treatment with licorice extract, the levels of AST/GOT #P <005, ##P <001. and ALT/GPT tended to control group and decreased in a dose-dependent manner, especially in licorice extract (60 mg/kg) (P <001) (Figure 8(a)). Licorice extract had a ff after the treatment of licorice extract (60 mg/kg) significantly protective e ect against paraquat-induced liver damage P <001 fi in mice. ( ), suggesting that licorice may promote the detoxi - fl cation of paraquat in vivo by upregulating CYP3A4, reduce The level of renal function was re ected by blood urea the time of paraquat action in vivo, and reduce or detoxify nitrogen (BUN) and creatinine (CRE) levels. Compared with the toxicity of PQ (Figure 5). the control group, the model group had increased BUN sig- nificantly (P <001). Compared with the model group, the licorice extract groups had decreased BUN especially in the 3.7. Licorice Reduces PQ Accumulation in Mice. After licorice extract (60 mg/kg) group (P <001). A significant dif- calculating the concentration of PQ in mouse plasma using ference was observed in serum BUN when comparing the lic- the method in the literature, it can be found that PQ accumu- orice extract (60 mg/kg) group with the model group lation in plasma of mice decreased in a dose-dependent (Figure 8(b)). Serum CRE increased rapidly after treatment manner after treatment of licorice extract. This may be of paraquat (P <001). After treatment with licorice extract, related to the upregulated expression of CYP3A4 and Nrf2 CRE level decreased in a dose-dependent manner especially underlying the alexipharmic mechanisms of licorice in the licorice extract (60 mg/kg) group (P <001). The result (P <001) (Figure 7). displays a protective effect against paraquat-induced renal Oxidative Medicine and Cellular Longevity 7

4 ∗∗ 25

) 20 # ) –1 3 1

## # – ∗∗ ## 15 2 MDA 10 SOD activity SOD 1 prot (U·mg (nmol· mg prot mg (nmol· 5

0 0 CTR CTR LE(L) LE(L) MOD MOD LE(H) LE(H) LE(M) LE(M) DXMS DXMS PQ (40 mg·kg–1) PQ (40 mg·kg–1) (a) (b)

Figure 4: Licorice extract reduces the level of MDA and increases the activity of SOD. Effects of treatment with licorice extract on the levels of MDA (a) and SOD activity (b) of the lung tissue. Treatment with licorice extract reduced the level of MDA and increased the activity in the lung tissues of PQ-induced lung injury. Data are means ± SEM; n =8. Compared with the CTR group, ∗P <005, ∗∗P <001; compared with the MOD group, #P <005, ##P <001. damage in mice. The mechanism of the protection appears to ingredients could potentially deplete GSH, and 50 ingre- be the induction of CYP3A4 and Nrf2 expression. dients could react with the CYP3A4 substrate according From the H&E staining results of the renal tissue, normal to the admetSAR website (accessed on May 1, 2015, renal structure was observed in the control group. In the mice http://lmmd.ecust.edu.cn/admetsar1). Ingredients have high with paraquat, tissue necrosis and hemorrhage and signifi- total score binding to CYP3A4. Ultimately, 28 ingredients cant tissue injury were observed also with tubular and could react both ways and these were divided into the follow- glomerular necrosis. Administration of licorice extract ing five classes: 6 coumarins, 3 flavonoids, 14 isoflavones, (60 mg/kg) improved tissue structure; glomeruli and tubules 4 chalcones, and 1 triterpene (Supplementary Table 3). We were better preserved (Figure 8(c)). chose GLL, ILF, LCA, LIA, and 18β-GA, the five ingredients Liver sections were analyzed for histopathological in licorice to represent the five classes. GLL was chosen due changes. Sections from the control group had radially to the high OB. LCA was chosen due to the high total score arranged normal hepatocytes with intact central veins and in molecular docking. 18β-GA has been reported and is bile ducts. Increased sinusoidal spaces and congestion, dam- responsible for the concentration-dependent induction of aged central vein and bile ducts, loss of cell boundaries, var- CYP3A and Nrf2 [18]. iable degrees of vacuolization, degenerating nuclei, and apoptotic cells were present in the paraquat group. Licorice 3.11. Effect of CYP3A4 in Active Ingredients of Licorice extract treatment, especially at a dosage of 60 mg/kg, some- Evaluated by Molecular Docking. The virtual docking results what preserved the normal liver histology (Figure 8(d)). indicated that LCA exhibited characteristics of strong bind- ing to the catalytic domain of CYP3A4. The total score was 3.9. Potential Active Target Searching and Clustering Analysis determined to be 6.0907. Other ingredients, namely, GLL, of Network Topology Relationship by MCODE. There are 104 LIA, ILF, and 18β-GA, were also used as ligands to interact common targets between licorice and paraquat. The Agilent with the catalytic domain of CYP3A4 (Figure 10). The total Literature Search networks of the expressed genes contained score of ILF, LIA, GLL, 18β-GA, and carbamazepine was 606 nodes and 1739 edges (Figure 9) (Supplementary determined to be 6.0287, 5.6487, 4.7912, 4.4983, and Table 1). Connections contain direct interaction partners 4.3030, respectively. LIA and carbamazepine also interact and interconnections. Cytoscape analysis revealed a great with ARG212. GLL, LIA, and 18β-GA interact with the same number of close interconnections that can be seen in ligands ARG105. SER119 was interacted with LCA, LIA, and Figure 5. MCODE was used to identify the hub genes or ILF (Figure 10) (Supplementary Table 4). in the networks with a connectivity degree ≥ 3.333 (Supplementary Table 2). Twenty-eight hub genes were 3.12. Effects of the Five Ingredients on A549 and HepG2 Cell selected from the network, which included Apoptosis Proliferation: A549 and HepG2 Cells Are More Sensitive regulator NFE2L2 (Nrf2) and CYP2B6. There are 36 to PQ with Nrf2 and CYP3A4 Inhibitor. HepG2 cell pre- oxidoreductases that express string and Nrf2 as the core of treatment with 10 μM KZ significantly reduced viability the region to CYP450 connected to the network and in the compared with HepG2 cells without KZ when PQ concentra- center. Prove two important targets Nrf2 and CYP450 in tion increased (Figure 11(a)). KZ reversely verified the activa- licorice and PQ (Supplementary Figure 6). tion of the hepatic drug-metabolizing enzyme capable of solution of PQ toxicity. Nrf2 knockdown of A549 cell viabil- 3.10. Network Screening of Active Ingredients. There were 101 ity was significantly reduced compared with A549 cells with ingredients in licorice with the filter conditions of OB ≥ 30% increased PQ concentration (Figure 11(b)). A549 cell pre- and DL ≥ 0 1 according to the TCMSP website. Fifty-five treatment with 10 μM LCA, LIA, and ILF significantly 8 Oxidative Medicine and Cellular Longevity

CYP3A4 (lung)

Nrf2

TGF-1

CYP3A4 (liver)

GAPDH

CTR MOD DXMS LE(L) LE(M) LE(H) (a) 1.5 2.0 ## ## ## # 1.5 ∗∗ ## # 1.0 # ∗∗ 1.0 Nrf2 0.5

CYP3A4 (lung) 0.5

0.0 0.0 CTR CTR LE(L) MOD LE(L) MOD LE(H) LE(H) LE(M) LE(M) DXMS DXMS PQ (40 mg·kg–1) PQ (40 mg·kg–1)

(b) (c) 2.0 1.5 ∗∗ ## ## 1.5 ## # 1.0

1 ## ## #  1.0 ∗∗ TGF- 0.5

0.5 CYP3A4 (liver)

0.0 0.0 CTR CTR LE(L) MOD LE(L) MOD LE(H) LE(H) LE(M) DXMS LE(M) DXMS PQ (40 mg·kg–1) PQ (40 mg·kg–1) (d) (e)

Figure 5: Licorice induce CYP3A4 and Nrf2 expression in mice and inhibit TGF-β1 expression. After processing the lung tissue of mice, Nrf2, CYP3A4, and TGF-β1 protein expression in the lung tissues and CYP3A4 protein expression in the liver tissues were measured by western blotting. CYP3A4 (lung): CYP3A4 expression in the lung tissues; CYP3A4 (liver): CYP3A4 expression in the liver tissues. Results show that licorice induce Nrf2 and CYP3A4 expression in a dose-dependent manner but inhibit TGF-β1 expression especially in licorice extract (60 mg/kg) (P <001). Data points and error bars represent the mean ± S E M of at least three experiments (n =3) for each concentration tested; (∗P <005).

reduced viability compared with A549 cell control group decreased the proliferation of HepG2 and A549 cells in a when PQ concentration increased and LCA increased the concentration-dependent manner after 24 h of incubation viability more than the other ingredients. HepG2 cell pre- (Figure 13). treatment with 10 μM LCA and ILF also reduced viability (Figures 12(a) and 12(b)). It verified the activation of the 3.13. Five Ingredients Induced Not Only the Activation of hepatic drug-metabolizing enzyme capable of solution of Nrf2, GR, Gpx, and NQO1 mRNA Expression in A549 Cells PQ toxicity. With 5 μM and 10 μM of GLL, ILF, LCA, But Also CYP3A4 mRNA Expression and CYP3A4 Protein and LIA and 50 μM and 100 μMof18β-GA added, there in HepG2 Cells. RT-PCR was performed after 8 h of incuba- was lower cytotoxic activity after 24 h of incubation, tion with the five selected ingredients and the levels of mRNA whereas higher concentrations of these ingredients expression were determined. Compared with the control Oxidative Medicine and Cellular Longevity 9

(a) (b) (c)

(d) (e) (f)

Figure 6: Photomicrographs of lung sections stained with Masson trichrome. The lung sections from the (a) normal group, (b) model group, (c) DXMS group, (d) licorice extract (20 mg/kg), (e) licorice extract (40 mg/kg), and (f) licorice extract (60 mg/kg) were stained with Masson trichrome. Fibrosis in the licorice extract group was decreased in a dose-dependent manner (magnification is ×400).

1.0 ∗∗ CTR 0h 1h MOD 0.8 # ## )

–1 0.6 ## 0.4 ## PQ (mg·mL 0.2 DXMS LE(L) LE(M) LE(H) 0.0 CTR LE(L) MOD LE(H) LE(M) DXMS PQ (40 mg·kg–1)

(a) (b)

Figure 7: Licorice reduces PQ accumulation in mice. (a) 2MB@CB[8] was used to investigate the concentration of PQ in plasma. After calculating the concentration of PQ in mouse plasma using the method in the literature, it can be found that PQ accumulation in plasma of mice decreased in a dose-dependent manner after treatment of licorice extract. (b) Fluorescence imaging of PQ in living mice. Excitation wavelengths of 580 ± 20 nm were used and the fluorescence emission was detected at 680 ± 30 nm in a Berthold chamber. According to real-time in vivo fluorescence imaging of PQ in the living mice, it can be seen that PQ can be readily tracked by using 2MB@CB[8] in living mice. The fluorescence spectra showed that the accumulation of PQ in the licorice extract (60 mg/kg) group was significantly lower than that in the control group. All data are expressed as the mean ± standard error; n =6. CTR: control; MOD: model. Compared with the CTR group, ∗P <005, ∗∗P <001; compared with the MOD group, #P <005, ##P <001.

group, Nrf2, GR, GPX, and NQO1 mRNA expressions CYP3A4 was significantly activated by 10 μM GLL, LCA, increased after 8 h exposure to 5 μM and 10 μM GLL, LCA, LIA, and ILF and 50 μM18β-GA, as detected by RT-PCR LIA, and ILF and 50 μM and 100 μM18β-GA with lower after 24 h of incubation with the five ingredients. In particu- cytotoxic activity. Treatment with GLL and 18β-GA resulted lar, LIA played a critical role in activating CYP3A4 in enhanced expression of Nrf2 in a dose-dependent manner. (Figure 15). Western blot analysis showed that the protein 5 μM LIA played a critical role in activating Nrf2. Treatment level of CYP3A4 expression was significantly increased com- with GLL, LCA, ILF, and 18β-GA resulted in enhanced pared to that of the control cells following 24 h of exposure to expression of GR in a dose-dependent manner. 5 μM ILF 10 μM GLL, ILF, LCA, and LIA and that 10 μM LCA played a critical role in activating GR (Figure 14). We found increased the protein levels of CYP3A4 more than the other that as the concentration of the five ingredients increased, ingredients (Figure 16). The total score of LCA is also more there was a rapid increase in Nrf2, GR, GPX, and NQO1 than the other ingredients in molecular docking. In sum- expression levels (Supplementary Table 5). mary, our results indicated that GLL, LCA, LIA, and ILF 10 Oxidative Medicine and Cellular Longevity

20 10 ∗∗ ∗∗ 8 15 ) )

–1 ## ## –1 6 # # 10 ## ## 4 AST/GOT ALT/GPT (U· gprot (U· gprot 5 2

0 0

CTR

CTR

LE(L)

MOD

LE(L)

MOD

LE(H)

LE(M)

LE(H)

DXMS

LE(M)

DXMS PQ (40 mg·kg–1) PQ (40 mg·kg–1) (a) 25 20 ∗∗ 20 ∗∗ 15 # ) # ) -1 -1 15 # ## ## ## 10

CRE ##

## BUN 10 (  mol·L (mmol·L 5 5

0 0

CTR CTR LE(L)

LE(L)

MOD MOD

LE(H) LE(H)

LE(M) LE(M) DXMS DXMS PQ (4 mg·kg-1) PQ (40 mg·kg-1)

(b)

CTR MOD CTR MOD

DXMS LE(L) DXMS LE(L)

LE(H) LE(M) LE(H) LE(M)

(c) (d)

Figure 8: Function and morphology of liver and renal tissues in mice. (a) The levels of alanine aminotransferase (ALT/GPT) and aspartate aminotransferase (AST/GOT) in serum. According to the elevated levels of AST/GOT and ALT/GPT in mice in the model group, the liver function of mice after intake of paraquat was damaged (P <001). After treatment with licorice extract, the levels of AST/GOT and ALT/GPT tended to control group and decreased in a dose-dependent manner, especially in licorice extract (60 mg/kg) (P <001). (b) The level of renal function was reflected by blood urea nitrogen (BUN) and creatinine (CRE) levels. Data are means ± SEM; n =8. Compared with the CTR group, ∗P <005, ∗∗P <001; compared with the MOD group, #P <005, ##P <001. Compared with the control group, the model group had increased BUN and CRE significantly (P <001). Compared with the model group, the licorice extract groups had decreased BUN especially in the licorice extract (60 mg/kg) group (P <001). (c, d) H&E staining results of renal and liver tissues. The pathological results of renal and liver tissues showed that no abnormalities were found in normal control; the morphological injury was severe in the paraquat group, which was alleviated in the licorice extract (60 mg/kg) group. Liver and renal sections were analyzed by hematoxylin and eosin (H&E) staining (magnification is ×200). Oxidative Medicine and Cellular Longevity 11

NQO1

gnaq tbx3

nr0b1 il4 s100b pkc p2ry1

mrc2 113 i22 becn1 reb msc neurog2 ripk1 bckdhb mrc1 polh lime1 lat nefl NFE2L2 hspg2 hspa5 nbn abl1 cox8a od40 bnlp3 nefl znf461 rab27a abl1 rel stk4 srl6 lp53bp1 tlr4 nos2 gna11 lyst znf793 chuk gstp1 eda2r rad50 pim blk mrgprd gclc chek2 ppa1 nb1 unod2 tr7 wdtc1 gfi1 nfe212 o1 mre11a cntnap2 mpo casp3 dk1 l10 yap1 fstl1 pkd3 taz hdac9 lck lrp1 trpv1 bcl2 oa hmgcs1 ahrr creb1 fgf2 ddr1 cyp3a5 tyms tnf nfatc2 gadd45a GCLC GSTP1 ptgfr tnfsf12 casp4 src trim69 bbc3 cd34 fdxr atm h2afx myo1g zbp1 crp nfatc2 cyp3a4 rpe rela hs11 ps1 brca1 mad3 hdac7 aggf1 nlrp3 tnfaip3 fos mdm2 cyp17a1 cyp2c19 cyp2d6 110 ct xpc srebf2 prkd1 prkd3 esr1 crebbp nf kappab bal3 mim32 tcdd tnfsf13 hras tnfrst10aeyp1a2 mbd2 ifna1 il1b cxcl1 lrp6 plger bax ervk2 cyp2e1 ilfa fyn egf rad51c gsdmd ahr mecp2 dnmt3a jun ccnd1 kpna mirn26a1 srf sox9 cdkn1a dnmt3b htr1a map2 mapke non1sw prkdc brca2 maib smad2 dnmt1 icam1 alpi marco mapke vegfa n2 at3 pax3 eif1 plau mf kpnb1phb2 rb1 dh1 lli ptgs2 lgr5 dnmt1 srf acaca htr2a non1 cox1 rage tph2 hdac1 mapt cd44 map2k6 prkaa gdf15 soat1 mapk mim63 sult2a1 rb12 sreon tat sst hmox1 pttp eg ptger2 mt1a adrcd socs2 krt5 tph1 mmp13 hbe1 irs hmga1 golph3 ptpn11 mim21 noc21 tabp5 afm ppig tert app (b) map3k7 erbb2 egr1 mut gpr120 abcb1 krt6a pk3ca cdk2 mycn krt17 ucp1 mapk3 abcb6 sqstm1 copd mtl1 cse hmi auca1 cd74 pcna tam igf1r akt1 pik3cb asp ulk1 aboc6 krt16 itln1 sdhb myc atp8a2 mctps1 stc2a14 cdk9 chrna4 ca apex1 hsd11b1 psen rassf1 rbc hic1 timp1 e2f1 s100a14 nfe2 gstp1 ik3r1 ocl21 nos1 sgsm3 rpr2 capg abcc1 mim206 mmp3 wisp1 hdac3 akt2 sfn nox4 mga3 odc42 utm ctnnb1 zeb1 bmp2 os1 akt3 mim21 ndrg1 krt19 chma7 tlr2 inpp4b keap1 cc15 nkx3-1 CYP2D6 ybx1 col2a1 a1 3r2 ig11 bst2 abcc3 ptk2 esr2 pk3r3 jmjd1a rap2k1 pvt11 maf klk3 smad1 birc3 neurog 1 sh3pxd2a csda dpep1 acsl3 hsp90aa1 smed4 ptk2b creb314 glt2 decr1 mmm1 runx2 uts2r abra1d cot9a3 eif4e rps6kb1 lox skc5a2 mapk1 nif1a hba1 aldoc trib3 4.1.2.13 adamts4 hsd11b2 gnb1 mbd4 ogg1 cb pkm2 vim cfd dst bre actin gnat1 lep mapk10 usp29 wisp2 foxa1 hba2 alpp cacna1e cds1 pparg esmg CYP2E1 cebpb mirn125a CYP2C19 dstn lpl esma polb

adipoq cfl1 limk1 fabp4 dsh nrip1 fam162a faah epas1 CYP1A2 snord87 trim16 slc39a6

n1 abhd4 pgmc2 em1 pgc gde1 hts gpr55 sardh cnr1 slc7a1 naaa napepld cnr2 ephx2

(a) (c)

Figure 9: Network construction of protein interaction in licorice ingredients and paraquat. The ingredients of OB ≥ 30% and DL ≥ 0 1 in licorice through TCMSP database (Supplementary Table 1) and PQ were submitted to the Agilent Literature Search software v.3.1.1 (http://www.agilent.com/labs/research/litsearch.html), which is a powerful automatic metasearch tool for querying multiple text-based PubMed and USPTO, for associations among genes of interest and constructing a network. Agilent Literature Search is a registered plugin and can be used in conjunction with Cytoscape 3.2 (accessed on May 1, 2015, http://www.cytoscape.org/) to realize the visualization and analyzation of the network (parameters: Max Engine Matches = 10; Concept Lexicon = Homo sapiens; Interaction Lexicon = limited). (a) Agilent Literature Search Network of 104 common genes from licorice and PQ based on Cytoscape; red ellipses indicate downstream genes of Nrf2 and CYPs, whose seed genes are included in our list. (b) NFE2L2 (Nrf2) and (c) CYP1A2 seed nodes, respectively. All edges represent physical interactions. And there is a synergy between Nrf2 and CYPs; among them, GSTP1 is the key target to connect the two groups (Supplementary Figure 6). activation of the Nrf2 signaling pathway and its downstream to those of the control vector transfected cells following 8 h genes, in addition to the activation of the CYP3A4, could be of exposure to 10 μM LCA and LIA and 50 μM18β-GA but one of the detoxification mechanisms in licorice. did moderately increase with exposure to LIA (Figure 17).

3.14. Five Ingredients Downregulated GCLM and NQO1 4. Discussion mRNA Expression in Nrf2-Silenced A549 Cells. In order to understand the alexipharmic role of CYP3A4 and Nrf2, we PQ is highly toxic to humans and induces extensive pulmo- used Nrf2-silenced A549 cell line for further study. We then nary injury, including pulmonary edema, hypoxemia, respi- transfected cells with Nrf2 siRNA. Compared with the con- ratory failure, and pulmonary fibrosis [40]. Generally, acute trol and shRNA-NC, the Nrf2 gene-silenced two A549 cell lung injury is diffused heterogeneous lung injury character- clones displayed a declining trend in the expressions of the ized by hypoxemia, noncardiogenic pulmonary edema, low glutathione pathway genes; GCLM and NQO1 were down- lung compliance, and widespread capillary leakage [41]. At regulated. RT-PCR was performed after 8 h of incubation present, the mechanism of PQ-induced ALI is still not with the five ingredients and mRNA expression levels were conclusively known. Most scholars believe that PQ determined. Compared with the control group, GCLM induces its toxic effects mainly by oxidative stress which mRNA expression did not increase following 8 h of exposure has an important function in this process. In oxidative to 10 μM GLL, LCA, LIA, and ILF and 50 μM18β-GA. stress process, PQ consumes nicotinamide adenine dinu- NQO1 mRNA expression levels did not increase compared cleotide phosphate and cytochrome P450 reductase, 12 Oxidative Medicine and Cellular Longevity

(a) (b)

(c) (d)

(e) (f)

Figure 10: Compounds docked to the catalytic site of CYP3A4. The drug is shown in stick form. The broken lines represent hydrogen bonds. Interacting amino acid residues are labeled (a) GLL, (b) LCA, (c) LIA, (d) ILF, (e) 18β-GA, and (f) carbamazepine.

120 120 ## ## 100 100 ∗∗ ∗∗ ∗∗ # 80 ∗∗ ∗∗ ## 80 ∗∗ ∗∗ 60 ∗∗ ∗∗ ## 60 ∗∗ ∗∗ ∗∗ ∗∗ ∗∗ 40 40 ∗∗ ∗∗ ∗∗ Cell viability (%) Cell viability Cell viability (%) Cell viability ∗∗ 20 20 0 0 02.55 102040 02.55 102040 PQ (M) PQ (M) CTR Nrf2 (+) KZ (4 h) Nrf2 (–) (a) (b)

Figure 11: A549 and HepG2 cells more sensitive to PQ with Nrf2 and CYP3A4 inhibitor. (a) HepG2 cell pretreatment with 10 μM ketoconazole for 4 h and exposure to 0-40 μM PQ for 24 h and HepG2 cell exposure to 0-40 μM PQ for 24 h. (b) Cell viability. A549 cells and Nrf2 knockdown A549 cells (5 0×104) were incubated with the indicated concentrations of PQ for 24 h. All data are expressed as the mean ± standard error; n =4. CTR: control. #P <005 and ##P <001 vs. A549 and HepG2 group; ∗P <005 and ∗∗P <001 vs. control group. causing oxidative stress reaction. It told us that antioxida- acute lung injury in vivo. To study the mechanism of detox- tion and detoxification are important in the treatment of ification and antioxidation, we use a system pharmacology paraquat detoxification. approach to determine the active components in licorice As a famous herbal alexipharmacon, licorice has demon- [42]. As depicted in the results, in vivo studies indicated that strated remarkable polypharmcological applications, such as licorice alleviate pulmonary edema and fibrosis, decrease anticancer, anti-inflammatory, and hepatoprotective effects MDA contents and increase SOD activity in PQ-induced [18]. Recent successful efforts were made on antidotes for ALI mice, protect the morphologic appearance of lung tis- various poisonings, including but not limited to, food, herbs, sues, induce CYA3A4 and Nrf2 expression to active detox- herbicides, pesticides, drugs, and heavy metals [18]. Gene ification pathways, reduce the accumulation of PQ in vivo, functional classification illustrates correlated expression pat- protect or improve the liver and renal function of mice, terns and because of the importance of networks in system and increase the survival rate. With the positive effect biology, quantitative tools have been developed in recent in vivo, we explore the possible mechanisms of action years for analyzing these networks [28]. In the present study, and obtained four unreported candidate compounds in we use oxidative stress biomarkers and detoxifying enzymes silico. GLL (OB = 90 78%) is a natural compound extracted to measure the protective effect of licorice on PQ-induced from Glycyrrhiza uralensis. IFL (OB = 45 17%) was Oxidative Medicine and Cellular Longevity 13

120 ##

100 ∗ ## ∗∗ ∗ ## ## ∗∗ ∗∗ ∗∗ ∗∗ 80 ∗∗ ## ## ∗∗ ∗∗ ∗∗ ∗∗ ## ∗∗ ∗∗∗∗ ∗∗ ∗∗ ∗∗ 60 ∗∗ ∗∗∗∗

∗∗

Cell viability (%) Cell viability 40

20

0 0 2.5 5 10 20 40 PQ (M)

CTR LIA GLL ILF LCA (a) ## 120 ## ## ## ## ## ## 100 ## ∗ ∗∗∗∗ ∗∗ ∗∗ ∗∗ ## ## 80 ∗∗ ## ∗∗ ∗∗ ∗∗

60 ∗∗∗∗ ∗∗∗∗

∗∗

Cell viability (%) Cell viability 40 ∗∗

20

0 0 2.5 5 10 20 40 PQ (M)

CTR LIA GLL ILF LCA (b)

Figure 12: LCA, LIA, and ILF reduced viability when PQ concentration increased. (a) HepG2 cell pretreatment with 10 μM GLL, LCA, LIA, and ILF for 6 h and exposure to 0-40 μM PQ for 24 h. (b) A549 cell pretreatment with 10 μM GLL, LCA, LIA, and ILF for 6.0 h and exposure to 0-40 μM PQ for 24 h. CTR: control. #P <005 and ##P <001 vs. pharmacological preconditioning group and the blank group; ∗P <005 and ∗∗P <001 vs. control group.

identified and considered to be an active inhibitor against Analyzing the network properties of gene expression data angiogenesis and a promising compound as a potential can- might reveal the organizational pattern of gene expression in cer chemopreventive agent [43]. LIA (OB = 41 61%) was licorice, which might, in turn, help to identify the mecha- identified for its antibacterial and gastroprotective properties nisms of molecular detoxification. Drug-metabolizing [44]. At low concentrations, it inhibits MRP-mediated efflux enzymes such as CYP450, which help bioactivate toxic sub- to control MRP-like activity in human erythrocytes. LCA stances, and phase II enzyme GST, which can reduce the tox- (OB = 40 79%) has been shown to exhibit multiple pharma- icity of electrophilic compounds formed by phase I enzymes cological properties [45]. [46]. In a series of redox reactions, PQ consumes 14 Oxidative Medicine and Cellular Longevity

HepG2 120 120 120

100 100 100 ∗∗ 80 80 ∗∗ 80

60 60 60 ∗∗

40 ∗∗ 40 40 Cell Viability (%) Cell Viability Cell Viability (%) Cell Viability ∗∗ ∗∗ ∗∗ 20 (%) Cell Viability 20 20

0 0 0 0 5 10 20 50 100 0 5 10 20 50 100 0 5 10 20 50 100   GLL (M) LCA ( M) LIA ( M) (a) (b) (c) A549 120 120 120

100 ∗∗ 100 ∗∗ 100 ∗∗ ∗∗ ∗∗ ∗∗ 80 80 ∗∗ 80 60 ∗∗ 60 60 ∗∗ ∗∗ ∗∗ 40 40 40 Cell Viability (%) Cell Viability Cell Viability (%) Cell Viability Cell Viability (%) Cell Viability 20 20 20 0 0 0 0 5 10 20 50 100 0 5 10 20 50 100 0 5 10 20 50 100 ILF (M) 18-GA (M) GLL (M) (d) (e) (f) 120 120 100 ∗∗ 100 ∗∗ ∗∗ ∗∗ ∗∗ ∗∗ ∗∗ 80 80 ∗∗ 60 60 ∗∗ 40 ∗∗ 40 Cell Viability (%) Cell Viability Cell Viability (%) Cell Viability 20 20 0 0 0 5 10 20 50 100 0 5 10 20 50 100 LCA (M) LIA (M) (g) (h) 120 120

100 ∗∗ ∗∗ ∗∗ 100 ∗∗ ∗∗ ∗∗ ∗∗ ∗∗ 80 80 ∗∗

60 ∗∗ 60 40 40 Cell Viability (%) Cell Viability 20 20 0 0 0 5 10 20 50 100 0 5 10 20 50 100 ILF (M) 18-GA (M) (i) (j)

Figure 13: Cell viability. (a) HepG2 treated with GLL. (b) HepG2 treated with LCA. (c) HepG2 treated with LIA. (d) HepG2 treated with ILF. (e) HepG2 treated with 18β-GA. (f) A549 treated with GLL. (g) A549 treated with LCA. (h) A549 treated with LIA. (i) A549 treated with ILF. (j) A549 treated with 18β-GA. All data are expressed as the mean ± standard error; n =4. CTR: control. ∗P <005 and ∗∗P <001 vs. control group. nicotinamide adenine dinucleotide phosphate and cyto- metabolic products of drugs and the detoxification process chrome P450 reductase, cause oxidative stress reaction. depend on the balance between phase I and phase II Hence, the actual effects of the accumulation of toxic enzymes. Oxidative Medicine and Cellular Longevity 15

GAPDH

Nrf2

GR

GPX

NQO1

5 10 5 10 5 10 5 10 50 100

CTR

tBHQ

(10 M) 

ILF ( M) 

LIA ( M) LIA 

GLL ( M) 

LCA ( M) LCA 

18 -GA ( M)  (a) ∗∗ 12 ∗∗

10 ∗∗ ∗∗ ∗∗ 8 ∗∗ ∗∗ ∗∗

6 ∗∗ ∗∗ ∗∗ ∗∗∗∗ ∗∗ 4 ∗∗ ∗∗ ∗∗ ∗ ∗ ∗ ∗∗ ∗ ∗∗ ∗∗ ∗ ∗∗ 2 ∗∗

0

5 10 5 10 5 10 5 10 50 100

CTR

tBHQ

(10 M) 

ILF ( M) 

LIA ( M) LIA 

GLL ( M) 

LCA ( M) LCA 

18 -GA ( M) 

Nrf2 GPX GR NQO1 (b)

Figure 14: Effects of the five compounds on Nrf2, GR, GPX, and NQO1 mRNA expression in A549 cells. (a) A549 cells were incubated with 5 or 10 μM GLL, ILF, LCA, and LIA and 50 or 100 μM18β-GA. Those expression levels were monitored by semiquantitative RT-PCR assay. (b) The expression levels were monitored by quantitative real-time RT-PCR. Data points and error bars represent the mean ± S E M of at least three experiments (n =3) for each concentration tested; (∗P <005).

Nrf2, a master regulator of the detoxifying response, component of airway inflammation [47]. Previous studies plays a critical role in the expression of many cytoprotective have shown that Nrf2 protects against endotoxin-induced enzymes, including NQO1, HO-1, and glutathione S- hepatic injury through transcriptional upregulation of transferase (GST). As represented in Figure 9, there are many downstream genes, such as GCL, GR, GPX, and NQO1 [48], proteins with the most degrees as hubs, such as AFF4 which suggest that the protective part of Nrf2 is attributed (AF4/FMR2 family, member 4), Nrf2, and CYP2B6. We partly to its involvement in coordinated induction of phase selected all oxidoreductase to analyze the bond that linked II drug-metabolizing enzymes. Studies have shown that them. In Supplementary Figure 6, GST is the more overexpression of GR is capable of increasing stress important protein as a link between CYP450 and Nrf2. tolerance. Glutathione peroxidase-1 (GPx-1) is an According to the literature, GST may account for the intracellular antioxidant enzyme that enzymatically reduces variation in host response to oxidative stress, a key hydrogen peroxide to water to limit its harmful effects. 16 Oxidative Medicine and Cellular Longevity

∗∗ 3.0

2.5 ∗ ∗ ∗ 2.0 ∗∗ 1.5

CYP3A4 1.0 GAPDH 0.5 CYP3A4 0.0 PBA PBA CTR CTR 10  M ILF 10  M ILF 10  M LIA 10  M LIA 10  M GLL 10  M GLL 10  M LCA 10  M LCA 50  M 18 -GA 50  M 18 -GA (a) (b)

Figure 15: Effects of the five compounds on CYP3A4 mRNA expression in HepG2 cells. (a) HepG2 cells were incubated with 10 μM GLL, LCA, LIA, and ILF and 50 μM18β-GA. Those expression levels were monitored by semiquantitative RT-PCR assay. (b) The expression levels were monitored by quantitative real-time RT-PCR. Data points and error bars represent the mean ± S E M of at least three experiments (n =3) for each concentration tested; (∗P <005).

3.0 ∗∗

2.5 ∗∗

2.0 ∗∗ ∗∗ ∗∗ ∗∗ 1.5

CYP3A4 1.0

CYP3A4 0.5 GAPDH 0.0 PBA CTR PBA CTR 10  m ILF 10  m LIA 10  m GLL 10  M ILF 10  m LCA 10  M LIA 10  M GLL 10  M LCA 50  m 18 -GA 50  M 18 -GA (a) (b)

Figure 16: Effects of the five compounds on CYP3A4 expression in HepG2 cells. (a) HepG2 cells were incubated with 10 μM GLL, LCA, LIA, and ILF and 50 μM18β-GA for 24 h. CYP3A4 protein expression was measured by western blotting. (b) Data points and error bars represent the mean ± S E M of at least three experiments (n =3) for each concentration tested; (∗P <005).

NQO1, a phase II metabolic enzyme, is known as a target for antioxidant responsive element-mediated induction of oxi- bioreductive activation of certain anticancer drugs and dative stress enzyme genes and plays an important role in antioxidants and as a means of xenobiotic detoxification. the development of PQ-induced ALI. Many studies GCL, the enzyme that catalyzes the rate-limiting step in the showed their results by inhibiting oxidative stress to slow biosynthesis of GSH, can combine with toxic components, down the process of ALI [13]. Studies have revealed that leading to the excretion of those toxins [21]. Nrf2 knockout mice were more susceptible to butylated The study has shown that drug metabolism and efflux hydroxytoluene-induced lung injury and acetaminophen- transporters are considered to play important roles in regu- induced hepatotoxicity at high doses [50]. It was identified lating the body. Concurrently, the subnetwork with the seed that the RNAi-mediated reduction of Nrf2 expression in gene, Nrf2, is a basic leucine zipper transcription factor and lung cancer cells induces the generation of ROS, decreases is necessary against oxidative stress and regulates the expres- the level of reduced glutathione, and results in an increase sions of a variety of drug-metabolizing enzymes [21, 49]. in the A549 cell proliferation inhibition rate. In corrobora- It has been found that Nrf2, an important transcription tion with GR, GPX and GST gene expression as well as factor of oxidative stress, is known to be essential for the the total GSH levels was significantly reduced in Nrf2 Oxidative Medicine and Cellular Longevity 17

1.0 Nrf-2 (–) 0.8

GAPDH 0.6 ∗∗ 0.4 ∗ NQO1 ∗∗ ∗∗ ∗∗ ∗∗ ∗∗ ∗∗ ∗∗ 0.2 GCLM ∗∗ 0.0 CTR CTR Nrf-2(+) Nrf-2(+) 10  M ILF 10  M LIA 10  M GLL 10  M ILF 10  M LCA 10  M LIA 10  M GLL 10  M LCA 50  M 18 -GA 50  M 18 -GA

NQO1 GCLM (a) (b)

Figure 17: Effects of the five compounds on GCLM and NQO1 mRNA expression in A549 cells. (a) A549 cells were incubated with 10 μM GLL, LCA, LIA, and ILF and 50 μM18β-GA. Those expression levels were monitored by semiquantitative RT-PCR assay. (b) The expression levels were monitored by quantitative real-time RT-PCR. Data points and error bars represent the mean ± S E M of at least three experiments (n =3) for each concentration tested; (∗P <005). shRNAi A549 cells and in comparison with the have the potential activity of detoxification on paraquat poi- shRNA-NC control cells. Nrf2 expression downregulation soning through in vivo experiments. And the content of four profoundly decreased the expression of key antioxidative new compounds of licorice after in silico screening is worth enzyme genes, glutathione pathway genes with a construc- exploring. Perhaps the effect of drug combination between tive activation of Nrf2 function. Thus, the licorice-induced detoxification molecules will be better. Notably, these data expression of Nrf2 can enhance detoxification [30]. As might represent, at least in part, a new mechanism by which shown in the present study, we successfully disclosed that the traditional use of licorice can alleviate the side effects of GLL, LCA, ILF, and LIA significantly induce GR, GPX, toxic TCMs. and NQO1 mRNA expression (Figure 14), and we first indicated that GLL, ILF, LCA, and LIA induce CYP3A4 5. Conclusion mRNA expression (Figure 15) and have subsequent effects on CYP3A4 protein levels (Figure 16). On the basis of The current study constitutes the antioxidation and detoxifi- total score in molecular docking, LCA was found to be a cation effects of licorice extract on PQ-induced acute lung better CYP3A4 agonist than the other ingredients, which injury, alleviating pulmonary edema and fibrosis, reducing is consistent with our results. However, it is noteworthy the accumulation of PQ in vivo, protecting or improving liver to mention that all the other ingredients also showed con- and renal function of mice, and finally, improving the sur- siderable affinities toward CYP3A4. Hence, structures of vival rate of mice. For the first report, GLL, ILF, LCA, and these ingredients could be used for designing antidotes LIA increased the level of CYP3A4 and Nrf2 as a mechanism against toxic medications. The virtual docking results indi- for detoxification. Moreover, GLL was found to be a better cated that the five ingredients exhibited characteristics of CYP3A4 agonist than the other ingredients. strong binding to the catalytic domain of CYP3A4. The five compounds induced CYP3A4 mRNA and protein levels fur- Abbreviations ther indicating that the five compounds are CYP3A4 agonists (Supplementary Table 4). It verified the activation of hepatic A549: The human type II alveolar adenocarci- drug-metabolizing enzyme capable of solution of PQ toxicity nomic basal epithelial cells through GLL, LCA, LIA, and ILF. ALI: Acute lung injury We hope low-concentration compounds of licorice as an ADMET: Absorption, Distribution, Metabolism, emerging paradigm emphasizes molecularly targeted Excretion, and Toxicity approaches for PQ-induced lung injury therapy. In vivo AFF4: AF4/FMR2 family, member 4 study showed that licorice increase the level of CYP3A4 AKT-1: RAC-alpha serine/threonine-protein kinase and Nrf2, alleviate pulmonary edema, injury, and fibrosis, BAX: Apoptosis regulator BAX reduce the accumulation of PQ in vivo, protect or improve CYP450: Cytochrome P450 the liver and renal function of mice, and ultimately improve CYP3A4: Cytochrome 3A4 the survival rate of mice. GLL, ILF, LCA, 18β-GA, and LIA DMEM/F12: Dulbecco’s Modified Eagle’s Medium isolated from licorice significantly induce Nrf2 and its down- Nutrient Mixture F-12 stream detoxification genes GR, GPX, and NQO1. We can DL: Drug-likeness infer that the other active components in licorice may also GAPDH: 18 Oxidative Medicine and Cellular Longevity

Glyceraldehyde-3-phosphate Acknowledgments dehydrogenase GCLM: Glutamate cysteine ligase modifier This study was supported by the National Natural Science GLL: Glycyrol Foundation of China (No. U1603122, 81460566), the key fi GPX: Glutathione peroxidase Scienti c and Technological program of Licorice Planting GR: Glutathione reductase and Quality Improvement in Xinjiang (No. 2018AB012), GSH: Glutathione and the Young and middle-aged Leading talents funds HepG2: Human hepatocellular liver carcinoma cell (No. 2018CB019) of Xinjiang Production & Construction HP: Hemoperfusion Corps. ADME property predictions were supported by ILF: Isolicoflavonol Prof. Yonghua Wang. Cucurbit[8]uril and PQ detection KZ: Ketoconazole method were supported by Prof. Shiguo Sun. Blood sam- LE: Licorice extract ple and preparation were supported by Prof. Yingchun fl LCA: Licochalcone A Li. Virtual molecular docking via Sur ex-Dock in SYBYL LIA: Licoisoflavone A -X 2.0 was supported by Prof. Yun Tang. MCODE: Molecular Complex Detection MDA: Malondialdehyde MEM: Minimum Essential Medium Supplementary Materials MTT: 3-(4.5-Dimethylthiazol-2-yl)-2.5-diphenyl Supplementary Table 1: the ingredients of OB ≥ 30% and tetrazolium bromide DL ≥ 0 1 in licorice and nodes in Agilent Literature Nrf2, NFE2L2: Nuclear factor erythroid 2-related factor 2 Search. Supplementary Table 2: MCODE scoring for PPI NQO1: NAD (P)H:quinoneoxidoreductase network. Molecular docking was used as a tool to screen OB: Oral bioavailability for ingredients having strong energy binding to CYP3A4, PQ: Paraquat which is a member of the cytochrome P450 family of QSAR: Quantitative structure-activity relationship oxidizing enzymes. MCODE was used to identify the RT-PCR: Real-Time PCR hub genes or proteins in the networks with a connectivity SFRP4: Secreted frizzled-related protein 4 degree ≥ 3.333. Supplementary Table 3: active compounds SOD: Superoxide Dismutase which could potentially deplete GSH and have high total TCMSP: Traditional Chinese Medicine Systems score binding to CYP3A4 according to the admetSAR Pharmacology Database and Analysis website. Supplementary Table 4: molecular docking score Platform for ingredients that have strong energy binding to TCM: Traditional Chinese medicine CYP3A4. Supplementary Table 5: Real-Time PCR primer 18β-GA: 18Beta-glycyrrhetinic acid. sequences. Supplementary Figure 6: there are 36 oxidore- ductases that express string and Nrf-2 as the core of the Data Availability region to CYP450 connected to the network and in the cen- ter. Prove two important targets Nrf-2 and CYP450 in lico- rice and PQ. Supplementary Figure 7: the effect of licorice All data generated or analyzed during this study are extract on levels of MDA and SOD. Effects of treatment with included in this published article and its supplementary licorice extract on the levels of MDA (A) and SOD activity information files. (B) of the lung tissue. Treatment with licorice extract reduced the level of MDA and increased the activity in the lung tissues Conflicts of Interest of PQ-induced lung injury. But in LE (80 mg/kg), MDA and SOD levels were increased compared with LE (60 mg/kg). Data are means ± SEM; n =8. ∗P <005 and ∗∗P <005 The authors declare that there is no conflict of interest # ## compared with the CTR group, P <005 and P <001 regarding the publication of this article. compared with the MOD group. Supplementary Figure 8: DXMS docked to the catalytic site of CYP3A4. Authors’ Contributions (Supplementary Materials) References Zi-Jing Liu and Jing Zhong wrote the manuscript. Ji-Ye Wang and Ze-Hui Chen made the network pharmacolog- [1] M. Eddleston and M. Phillips, “Self poisoning with pesticides,” ical analysis. Jing Zhong, Xiao-Qin Wang, and Mei Zhang BMJ, vol. 328, no. 7430, pp. 42–44, 2004. participated in cell culture, RT-PCR, and data analysis. [2] S. Sun, F. Li, F. Liu, J. Wang, and X. Peng, “Fluorescence Zi-Jing Liu and Han-Ying Chen performed animal experi- detecting of paraquat using host-guest chemistry with cucurbi- ments, western blotting, and data analysis. Bo Zhang t[8]uril,” Scientific Reports, vol. 4, no. 1, p. 3570, 2014. designed the study and improved the quality of the man- [3] X. Wang, M. Zhang, J. Ma et al., “Metabolic changes in para- uscript. All authors reviewed and approved the final man- quat poisoned patients and support vector machine model of uscript. Zi-Jing Liu, Jing Zhong, and Mei Zhang discrimination,” Biological & Pharmaceutical Bulletin, contributed equally to this work. vol. 38, no. 3, pp. 470–475, 2015. Oxidative Medicine and Cellular Longevity 19

[4] L. Hu, G. Hong, J. Ma, X. Wang, and H. Chen, “An efficient medicine: a review of its role in drug interactions,” Journal of machine learning approach for diagnosis of paraquat- Ethnopharmacology, vol. 150, no. 3, pp. 781–790, 2013. poisoned patients,” Computers in Biology and Medicine, [19] N. Tadigoppula, V. Korthikunta, S. Gupta et al., “Synthesis and vol. 59, pp. 116–124, 2015. insight into the structure-activity relationships of chalcones as [5] H. W. Gil, M. S. Kang, J. O. Yang, E. Y. Lee, and S. Y. Hong, antimalarial agents,” Journal of Medicinal Chemistry, vol. 56, “Association between plasma paraquat level and outcome of no. 1, pp. 31–45, 2012. paraquat poisoning in 375 paraquat poisoning patients,” Clin- [20] Y. R. Kim, J. E. Oh, M. S. Kim et al., “Oncogenic NRF2 ical Toxicology, vol. 46, no. 6, pp. 515–518, 2009. mutations in squamous cell carcinomas of oesophagus and [6] M. S. Kang, H. W. Gil, J. O. Yang, E. Y. Lee, and S. Y. Hong, skin,” The Journal of Pathology, vol. 220, no. 4, pp. 446–451, “Comparison between kidney and hemoperfusion for para- 2010. quat elimination,” Journal of Korean Medical Science, vol. 24, [21] H. Gong, B. K. Zhang, M. Yan et al., “A protective mechanism of Supplement 1, p. S156, 2009. licorice (Glycyrrhiza uralensis): isoliquiritigenin stimulates [7] S. Y. Hong, J. O. Yang, E. Y. Lee, and S. H. Kim, “Effect of detoxification system via Nrf 2 activation,” Journal of Ethno- haemoperfusion on plasma paraquat concentration in vitro pharmacology, vol. 162, pp. 134–139, 2015. and in vivo,” Toxicology and Industrial Health, vol. 19, no. 1, [22] Y. Lin, Y. Kuang, K. Li et al., “Nrf 2 activators from Glycyrrhiza pp. 17–23, 2003. inflata and their hepatoprotective activities against [8] C. W. Hsu, J. L. Lin, D. T. Lin-Tan et al., “Early hemoperfusion CCl4-induced liver injury in mice,” Bioorganic & Medicinal may improve survival of severely paraquat-poisoned patients,” Chemistry, vol. 25, no. 20, pp. 5522–5530, 2017. PLoS One, vol. 7, no. 10, article e48397, 2012. [23] S. Ji, Z. Li, W. Song et al., “Bioactive constituents of Glycyr- [9] Y. H. Jo, K. Kim, J. E. Rhee et al., “Therapeutic hypothermia rhiza uralensis (licorice): discovery of the effective components attenuates acute lung injury in paraquat intoxication in rats,” of a traditional herbal medicine,” Journal of Natural Products, Resuscitation, vol. 82, no. 4, pp. 487–491, 2011. vol. 79, no. 2, pp. 281–292, 2016. [10] G. Zollner, M. Wagner, and M. Trauner, “Nuclear receptors as [24] J. Cai, Q. Zhang, K. Lin, L. Hu, and Y. Zheng, “The effect of drug targets in cholestasis and drug-induced hepatotoxicity,” MGCD0103 on CYP450 isoforms activity of rats by cocktail Pharmacology & Therapeutics, vol. 126, no. 3, pp. 228–243, method,” BioMed Research International, vol. 2015, Article ID 2010. 517295, 7 pages, 2015. [11] S. Wang, Z. Wang, D. Chen et al., “Effect of acute paraquat [25] H. R. Lee, J. M. Cho, D. H. Shin et al., “Adaptive response to poisoning on CYP450 isoforms activity in rats by cocktail GSH depletion and resistance to L-buthionine-(S,R)-sulfoxi- method,” International Journal of Clinical and Experimental mine: involvement of Nrf 2 activation,” Molecular and Cellular Medicine, vol. 8, no. 10, pp. 19100–19106, 2015. Biochemistry, vol. 318, no. 1-2, pp. 23–31, 2008. [12] R. J. Dinis-Oliveira, J. A. Duarte, A. Sanchez-Navarro, [26] A. Song, for the Alzheimer’s Disease Neuroimaging Initiative, F. Remiao, M. L. Bastos, and F. Carvalho, “Paraquat poisonings: J. Yan et al., “Network-based analysis of genetic variants associ- mechanisms of lung toxicity, clinical features, and treat- ated with hippocampal volume in Alzheimer’s disease: a study ment,” Critical Reviews in Toxicology, vol. 38, no. 1, of ADNI cohorts,” BioData Mining, vol. 9, no. 1, p. 3, 2016. pp. 13–71, 2008. [27] F. Cheng, W. Li, Y. Zhou et al., “admetSAR: a comprehensive [13] A. Mustafa, A. M. Gado, O. A. Al-Shabanah, and A. M. source and free tool for assessment of chemical ADMET prop- Al-Bekairi, “Protective effect of aminoguanidine against erties,” Journal of Chemical Information and Modeling, vol. 52, paraquat-induced oxidative stress in the lung of mice,” no. 11, pp. 3099–3105, 2012. Comparative Biochemistry and Physiology Part C: Toxicology [28] G. D. Bader and C. W. V. Hogue, “An automated method for & Pharmacology, vol. 132, no. 3, pp. 391–397, 2002. finding molecular complexes in large protein interaction [14] A. Lavecchia and C. Cerchia, “In silico methods to address networks,” BMC Bioinformatics, vol. 4, no. 1, p. 2, 2003. polypharmacology: current status, applications and future per- [29] D. M. Skillrud and W. J. Martin 2nd, “Paraquat-induced injury spectives,” Drug Discovery Today, vol. 21, no. 2, pp. 288–298, of type II alveolar cells. An in vitro model of oxidant injury,” 2016. American Review of Respiratory Disease, vol. 129, no. 6, [15] A. Rocejanasaroj, T. Tencomnao, and W. Sangkitikomol, pp. 995–999, 1984. “Thunbergia laurifolia extract minimizes the adverse effects [30] B. Zhang, C. Xie, J. Zhong, H. Chen, H. Zhang, and of toxicants by regulating P-glycoprotein activity, CYP450, X. Wang, “A549 cell proliferation inhibited by RNAi and lipid metabolism gene expression in HepG2 cells,” Genet- mediated silencing of the Nrf 2 gene,” Bio-medical Mate- ics and Molecular Research, vol. 13, no. 1, pp. 205–219, rials and Engineering, vol. 24, no. 6, pp. 3905–3916, 2014. 2014. [31] H. Zali and M. Rezaei Tavirani, “Meningioma protein-protein [16] J. C. Chen, T. Y. Ho, Y. S. Chang, S. L. Wu, C. C. Li, and C. Y. interaction network,” Archives of Iranian Medicine, vol. 17, Hsiang, “Identification of Escherichia coli enterotoxin inhibi- no. 4, pp. 262–272, 2014. tors from traditional medicinal herbs by in silico, in vitro, [32] S. Shaikh, H. Aaqil, S. M. D. Rizvi et al., “Comparative inhi- ” and in vivo analyses, Journal of Ethnopharmacology, bition study of compounds identified in the methanolic – vol. 121, no. 3, pp. 372 378, 2009. extract of Apamarga Kshara against trichomonas vaginalis [17] M. Paolini, L. Pozzetti, A. Sapone, and G. Cantelli-Forti, carbamate kinase (TvCK): an enzoinformatics approach,” “Effect of licorice and glycyrrhizin on murine liver Interdisciplinary Sciences, vol. 8, no. 4, pp. 357–365, 2016. ” CYP-dependent monooxygenases, Life Sciences, vol. 62, [33] V. H. Teixeira, V. Ribeiro, and P. J. Martel, “Analysis of bind- – no. 6, pp. 571 582, 1998. ing modes of ligands to multiple conformations of CYP3A4,” [18] X. Wang, H. Zhang, L. Chen, L. Shan, G. Fan, and X. Gao, Biochimica et Biophysica Acta, vol. 1804, no. 10, pp. 2036– “Liquorice, a unique “guide drug” of traditional Chinese 2045, 2010. 20 Oxidative Medicine and Cellular Longevity

[34] M. C. Zimmermann, S. L. Tilghman, S. M. Boue et al., “Gly- [48] B. Zhang, X. Q. Wang, H. Y. Chen, and B. H. Liu, “Involve- ceollin I, a novel antiestrogenic phytoalexin isolated from acti- ment of the Nrf 2 pathway in the regulation of vated soy,” The Journal of Pharmacology and Experimental pterostilbene-induced apoptosis in HeLa cells via ER stress,” Therapeutics, vol. 332, no. 1, pp. 35–45, 2010. Journal of Pharmacological Sciences, vol. 126, no. 3, pp. 216– [35] S. NiPQad, B. Hashemi, Z. M. Hassan, and H. Mozdarani, 229, 2014. “The cell survival of F10B16 melanoma and 4T1 breast ade- [49] B. Zhang, N. Chen, H. Chen, Z. Wang, and Q. Zheng, “The nocarcinoma irradiated to gamma radiation using the MTT critical role of redox homeostasis in shikonin-induced HL-60 assay based on two different calculation methods,” Journal cell differentiation via unique modulation of the Nrf 2/ARE of Biomedical Physics & Engineering, vol. 3, no. 2, pp. 29– pathway,” Oxidative Medicine and Cellular Longevity, 36, 2013. vol. 2012, Article ID 781516, 12 pages, 2012. [36] H. Xie, J. Sun, Y. Chen, M. Zong, S. Li, and Y. Wang, “EGCG [50] A. Enomoto, K. Itoh, E. Nagayoshi et al., “High sensitivity of attenuates uric acid-induced inflammatory and oxidative Nrf 2 knockout mice to acetaminophen hepatotoxicity associ- stress responses by medicating the NOTCH pathway,” Oxida- ated with decreased expression of ARE-regulated drug metab- tive Medicine and Cellular Longevity, vol. 2015, Article ID olizing enzymes and antioxidant genes,” Toxicological Sciences, 214836, 10 pages, 2015. vol. 59, no. 1, pp. 169–177, 2001. [37] M. Y. Xu and Y. S. Kim, “Antitumor activity of glycyrol via induction of cell cycle arrest, apoptosis and defective autoph- agy,” Food and Chemical Toxicology, vol. 74, pp. 311–319, 2014. [38] T. J. Broekelmann, A. H. Limper, T. V. Colby, and J. A. McDonald, “Transforming growth factor beta 1 is present at sites of extracellular matrix gene expression in human pulmonary fibrosis,” Proceedings of the National Academy of Sciences, vol. 88, no. 15, pp. 6642–6646, 1991. [39] X. J. Huang, Y. K. Choi, H. S. Im, O. Yarimaga, E. Yoon, and H. S. Kim, “Aspartate aminotransferase (AST/GOT) and alanine aminotransferase (ALT/GPT) detection techniques,” Sensors, vol. 6, no. 7, pp. 756–782, 2006. [40] P. Mitsopoulos and Z. E. Suntres, “Cytotoxicity and gene array analysis of alveolar epithelial A549 cells exposed to paraquat,” Chemico-Biological Interactions, vol. 188, no. 3, pp. 427–436, 2010. [41] M. Caruso, A. Alamo, E. Crisafulli, C. Raciti, A. Fisichella, and R. Polosa, “Adenosine signaling pathways as potential thera- peutic targets in respiratory disease,” Expert Opinion on Therapeutic Targets, vol. 17, no. 7, pp. 761–772, 2013. [42] J. Ru, P. Li, J. Wang et al., “TCMSP: a database of systems pharmacology for drug discovery from herbal medicines,” Journal of Cheminformatics, vol. 6, no. 1, p. 13, 2014. [43] L. Han, Y. Yuan, L. Zhao et al., “Tracking antiangiogenic com- ponents from Glycyrrhiza uralensis Fisch. based on zebrafish assays using high-speed countercurrent chromatography,” Journal of Separation Science, vol. 35, no. 9, pp. 1167–1172, 2012. [44] L. Quesada, C. Areche, L. Astudillo, M. Gutierrez, B. Sepúlveda, and A. San-Martín, “Biological activity of isofla- vonoids from Azorella madreporica,” Natural Product Communications, vol. 7, no. 9, pp. 1187-1188, 2012. [45] T. Fukai, A. Marumo, K. Kaitou, T. Kanda, S. Terada, and T. Nomura, “Anti-Helicobacter pylori flavonoids from licorice extract,” Life Sciences, vol. 71, no. 12, pp. 1449–1463, 2002. [46] L. He, L. Gao, Z. Shi et al., “Involvement of cytochrome P 450 1A1 and glutathione S-transferase P 1 polymorphisms and promoter hypermethylation in the progression of anti-tuberculosis drug-induced liver injury: a case-control study,” PLoS One, vol. 10, no. 3, article e0119481, 2015. [47] M. A. Spiteri, A. Bianco, R. C. Strange, and A. A. Fryer, “Poly- morphisms at the glutathione S-transferase, GSTP1 locus: a novel mechanism for susceptibility and development of atopic airway inflammation,” Allergy, vol. 55, no. s61, pp. 15–20, 2000. M EDIATORSof INFLAMMATION

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