Complete Sections As Applicable
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Trabajo Fin De Grado Biotecnología
FACULTAD DE CIENCIA Y TECNOLOGÍA. LEIOA TRABAJO FIN DE GRADO BIOTECNOLOGÍA CLONACIÓN, EXPRESIÓN Y PURIFICACIÓN DE LA PROTEÍNA VIRAL VP4 DE TRIATOMA VIRUS Alumno: Goikolea Egia, Julen Fecha: Junio 2014 Director: Curso Académico: Dr. Diego Marcelo Guérin Aguilar 2013/14 ÍNDICE 1. INTRODUCCIÓN Y OBJETIVOS ........................................................................ 1 1.1. Ausencia de la proteína viral VP4 en la estructura cristalográfica de la cápside ............................................................................................................. 4 1.2. Viroporinas .................................................................................................... 5 1.3. Mecanismos de acción de proteínas con actividad permeabilizadora de membrana ........................................................................................................ 8 1.4. Objetivos ........................................................................................................ 11 2. DESARROLLO ..................................................................................................... 12 2.1. Materiales y Métodos ...................................................................................... 12 2.1.1. Purificación de TrV .............................................................................. 12 2.1.2. Extracción del ARN ............................................................................. 12 2.1.3. Clonaje de VP4-pET28a ...................................................................... -
Virology Journal Biomed Central
Virology Journal BioMed Central Research Open Access The use of RNA-dependent RNA polymerase for the taxonomic assignment of Picorna-like viruses (order Picornavirales) infecting Apis mellifera L. populations Andrea C Baker* and Declan C Schroeder Address: Marine Biological Association, The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK Email: Andrea C Baker* - [email protected]; Declan C Schroeder - [email protected] * Corresponding author Published: 22 January 2008 Received: 19 November 2007 Accepted: 22 January 2008 Virology Journal 2008, 5:10 doi:10.1186/1743-422X-5-10 This article is available from: http://www.virologyj.com/content/5/1/10 © 2008 Baker and Schroeder; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Single-stranded RNA viruses, infectious to the European honeybee, Apis mellifera L. are known to reside at low levels in colonies, with typically no apparent signs of infection observed in the honeybees. Reverse transcription-PCR (RT-PCR) of regions of the RNA-dependent RNA polymerase (RdRp) is often used to diagnose their presence in apiaries and also to classify the type of virus detected. Results: Analysis of RdRp conserved domains was undertaken on members of the newly defined order, the Picornavirales; focusing in particular on the amino acid residues and motifs known to be conserved. Consensus sequences were compiled using partial and complete honeybee virus sequences published to date. -
Structure of Nora Virus at 2.7 Å Resolution and Implications for Receptor Binding, Capsid Stability and Taxonomy
This document is downloaded from the VTT’s Research Information Portal https://cris.vtt.fi VTT Technical Research Centre of Finland Structure of Nora virus at 2.7 Å resolution and implications for receptor binding, capsid stability and taxonomy Laurinmäki, Pasi; Shakeel, Shabih; Ekström, Jens Ola; Mohammadi, Pezhman; Hultmark, Dan; Butcher, Sarah J. Published in: Scientific Reports DOI: 10.1038/s41598-020-76613-1 Published: 01/12/2020 Document Version Publisher's final version License CC BY Link to publication Please cite the original version: Laurinmäki, P., Shakeel, S., Ekström, J. O., Mohammadi, P., Hultmark, D., & Butcher, S. J. (2020). Structure of Nora virus at 2.7 Å resolution and implications for receptor binding, capsid stability and taxonomy. Scientific Reports, 10(1), [19675]. https://doi.org/10.1038/s41598-020-76613-1 VTT By using VTT’s Research Information Portal you are bound by the http://www.vtt.fi following Terms & Conditions. P.O. box 1000FI-02044 VTT I have read and I understand the following statement: Finland This document is protected by copyright and other intellectual property rights, and duplication or sale of all or part of any of this document is not permitted, except duplication for research use or educational purposes in electronic or print form. You must obtain permission for any other use. Electronic or print copies may not be offered for sale. Download date: 03. Oct. 2021 www.nature.com/scientificreports OPEN Structure of Nora virus at 2.7 Å resolution and implications for receptor binding, capsid stability and taxonomy Pasi Laurinmäki 1,2,7, Shabih Shakeel 1,2,5,7, Jens‑Ola Ekström3,4,7, Pezhman Mohammadi 1,6, Dan Hultmark 3,4 & Sarah J. -
Capsid Protein Identification and Analysis of Mature Triatoma
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Virology 409 (2011) 91–101 Contents lists available at ScienceDirect Virology journal homepage: www.elsevier.com/locate/yviro Capsid protein identification and analysis of mature Triatoma virus (TrV) virions and naturally occurring empty particles Jon Agirre a,c, Kerman Aloria b, Jesus M. Arizmendi c, Ibón Iloro d, Félix Elortza d, Rubén Sánchez-Eugenia a,h, Gerardo A. Marti e, Emmanuelle Neumann f, Félix A. Rey g, Diego M.A. Guérin a,c,h,⁎ a Unidad de Biofísica (CSIC-UPV/EHU), Barrio Sarriena S/N, 48940, Leioa, Bizkaia, Spain b Servicio General de Proteómica (SGIker), Universidad del País Vasco (UPV/EHU), 48940 Leioa, Spain c Departamento de Bioquímica y Biologia Molecular, Universidad del País Vasco (UPV/EHU), 48940 Leioa, Spain d CIC-BioGUNE, Proteomic plataform, CIBERehd, Proteored, Parque Tecnológico Bizkaia, Ed800, 48160 Derio, Bizkaia, Spain e Centro de Estudios Parasitológicos y de Vectores (CEPAVE) and Centro Regional de Investigaciones Científicas y Transferencia Tecnológicas La Rioja (CRILAR), 2#584 (1900) La Plata, Argentina f Laboratoire de Microscopie Electronique Structurale, Institut de Biologie Structurale Jean-Pierre Ebel, UMR 5075 CEA–CNRS–UJF, 41, rue Jules Horowitz, F-38027 Grenoble, Cedex 1, France g Unité de Virologie Structurale, CNRS URA 3015, Départment de Virologie, Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris Cedex 15, France h Fundación Biofísica Bizkaia, B Sarriena S/N, 48940 Leioa, Bizkaia, Spain article info abstract Article history: Triatoma virus (TrV) is a non-enveloped +ssRNA virus belonging to the insect virus family Dicistroviridae. -
Development of a Cricket Paralysis Virus-Based System for Inducing RNA Interference-Mediated
bioRxiv preprint doi: https://doi.org/10.1101/2020.11.15.383588; this version posted November 15, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 1 Development of a cricket paralysis virus-based system for inducing RNA interference-mediated 2 gene silencing in Diaphorina citri 3 4 Emilyn E. Matsumura1,a, Jared C. Nigg2, Elizabeth M. Henry1, Bryce W. Falk1* 5 6 1 Department of Plant Pathology, University of California, Davis, CA 95616, USA 7 2 Viruses and RNA Interference Unit, Institut Pasteur, UMR3569, CNRS, Paris, France 8 a Present address: Laboratory of Virology, Wageningen University and Research, 6700 AA 9 Wageningen, The Netherlands 10 * Corresponding author: Bryce W. Falk, [email protected] 11 12 Abstract 13 Diaphorina citri, the Asian citrus psyllid, is the insect vector of the phloem-limited bacterium 14 ‘Candidatus Liberibacter asiaticus’, which causes the most devastating citrus disease worldwide: 15 Huanglongbing (HLB). An efficient cure for HLB is still not available and the management of the 16 disease is restricted to the use of pesticides, antibiotics and eradication of infected plants. Plant- 17 and insect-infecting viruses have attracted increasing attention for their potential to manipulate 18 traits in insects, especially insect vectors of plant pathogens. However, so far there are no insect 19 virus-based vectors available for use in D. citri. Cricket paralysis virus (CrPV) is a well-studied 20 insect-infecting dicistrovirus with a wide host range and has been used as a model in previous 21 translational studies. -
ICTV Virus Taxonomy Profile: Dicistroviridae
ICTV VIRUS TAXONOMY PROFILES Valles et al., Journal of General Virology 2017;98:355–356 DOI 10.1099/jgv.0.000756 ICTV ICTV Virus Taxonomy Profile: Dicistroviridae S. M. Valles,1,* Y. Chen,2 A. E. Firth,3 D. M. A. Guerin, 4 Y. Hashimoto,5 S. Herrero,6 J. R. de Miranda,7 E. Ryabov2 and ICTV Report Consortium Abstract Dicistroviridae is a family of small non-enveloped viruses with monopartite, linear, positive-sense RNA genomes of approximately 8–10 kb. Viruses of all classified species infect arthropod hosts, with some having devastating economic consequences, such as acute bee paralysis virus in domesticated honeybees and taura syndrome virus in shrimp farming. Conversely, the host specificity and other desirable traits exhibited by several members of this group make them potential natural enemies for intentional use against arthropod pests, such as triatoma virus against triatomine bugs that vector Chagas disease. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the taxonomy of the Dicistroviridae which is available at www.ictv.global/report/dicistroviridae. Table 1. Characteristics of the family Dicistroviridae Typical member: cricket paralysis virus (AF218039), species Cricket paralysis virus, genus Cripavirus Virion Non-enveloped, 30 nm-diameter virions Genome 8–10 kb of positive-sense, non-segmented RNA Replication Cytoplasmic within viral replication complexes formed from a variety of host cellular membranes Translation Directly from genomic RNA, initiated at IRES elements in the 5¢ UTR and IGR Host range Arthropoda Taxonomy Member of the order Picornavirales. Includes the genera Aparavirus, Cripavirus and Triatovirus, each containing several species VIRION RNA polymerase, cysteine protease, RNA helicase and one Virions are roughly spherical, with a particle diameter of or more copies of a VPg protein. -
In Triatoma Infestans Known That the Entry of One Microorganism Favours the Entry of Another (Heteroptera : Reduviidae) from the Gran Chaco
Journal of Invertebrate Pathology 150 (2017) 101–105 Contents lists available at ScienceDirect Journal of Invertebrate Pathology journal homepage: www.elsevier.com/locate/jip Can Triatoma virus inhibit infection of Trypanosoma cruzi (Chagas, 1909) in T Triatoma infestans (Klug)? A cross infection and co-infection study ⁎ Gerardo Aníbal Martia,d, , Paula Ragoneb, Agustín Balsalobrea,d, Soledad Ceccarellia,d, María Laura Susevicha,d, Patricio Diosqueb, María Gabriela Echeverríac,d, Jorge Eduardo Rabinovicha,d a Centro de Estudios Parasitológicos y de Vectores (CEPAVE-CCT-La Plata-CONICET-UNLP), Boulevard 120 e/61 y 62, 1900 La Plata, Argentina b Unidad de Epidemiología Molecular del Instituto de Patología Experimental, Facultad de Ciencias de la Salud, Universidad Nacional de Salta, Salta, Argentina c Cátedra de Virología, Facultad de Ciencias Veterinarias (UNLP), 60 y 118, 1900 La Plata, Argentina d CCT-La Plata, 8#1467, 1900 La Plata, Argentina ARTICLE INFO ABSTRACT Keywords: Triatoma virus occurs infecting Triatominae in the wild (Argentina) and in insectaries (Brazil). Pathogenicity of Associated microorganisms Triatoma virus has been demonstrated in laboratory; accidental infections in insectaries produce high insect Dicistroviridae mortality. When more than one microorganism enters the same host, the biological interaction among them Protozoan differs greatly depending on the nature and the infection order of the co-existing species of microorganisms. We studied the possible interactions between Triatoma virus (TrV) and Trypanosoma cruzi (the etiological agent of Chagas disease) in three different situations: (i) when Triatoma virus is inoculated into an insect host (Triatoma infestans) previously infected with T. cruzi, (ii) when T. cruzi is inoculated into T. -
Natural Enemies of True Fruit Flies 02/2004-01 PPQ Jeffrey N
United States Department of Agriculture Natural Enemies of Marketing and Regulatory True Fruit Flies Programs Animal and Plant Health (Tephritidae) Inspection Service Plant Protection Jeffrey N. L. Stibick and Quarantine Psyttalia fletcheri (shown) is the only fruit fly parasitoid introduced into Hawaii capable of parasitizing the melon fly (Bactrocera cucurbitae) United States Department of Agriculture Animal and Plant Health Inspection Service Plant Protection and Quarantine 4700 River Road Riverdale, MD 20737 February, 2004 Telephone: (301) 734-4406 FAX: (301) 734-8192 e-mail: [email protected] Jeffrey N. L. Stibick Introduction Introduction Fruit flies in the family Tephritidae are high profile insects among commercial fruit and vegetable growers, marketing exporters, government regulatory agencies, and the scientific community. Locally, producers face huge losses without some management scheme to control fruit fly populations. At the national and international level, plant protection agencies strictly regulate the movement of potentially infested products. Consumers throughout the world demand high quality, blemish-free produce. Partly to satisfy these demands, the costs to local, state and national governments are quite high and increasing as world trade, and thus risk, increases. Thus, fruit flies impose a considerable resource tax on participants at every level, from producer to shipper to the importing state and, ultimately, to the consumer. (McPheron & Steck, 1996) Indeed, in the United States alone, the running costs per year to APHIS, Plant Protection and Quarantine (PPQ), (the federal Agency responsible) for maintenance of trapping systems, laboratories, and identification are in excess of US$27 million per year and increasing. This figure only accounts for a fraction of total costs throughout the country, as State, County and local governments put in their share as well as the local industry affected. -
A Novel Cripavirus of an Ectoparasitoid Wasp Increases Pupal Duration and Fecundity of the Wasp’S Drosophila Melanogaster Host
The ISME Journal https://doi.org/10.1038/s41396-021-01005-w ARTICLE A novel cripavirus of an ectoparasitoid wasp increases pupal duration and fecundity of the wasp’s Drosophila melanogaster host 1 1 1 1 1 1 2 3 Jiao Zhang ● Fei Wang ● Bo Yuan ● Lei Yang ● Yi Yang ● Qi Fang ● Jens H. Kuhn ● Qisheng Song ● Gongyin Ye 1 Received: 14 October 2020 / Revised: 21 April 2021 / Accepted: 30 April 2021 © The Author(s) 2021. This article is published with open access Abstract We identified a 9332-nucleotide-long novel picornaviral genome sequence in the transcriptome of an agriculturally important parasitoid wasp (Pachycrepoideus vindemmiae (Rondani, 1875)). The genome of the novel virus, Rondani’swaspvirus1(RoWV- 1), contains two long open reading frames encoding a nonstructural and a structural protein, respectively, and is 3’-polyadenylated. Phylogenetic analyses firmly place RoWV-1 into the dicistrovirid genus Cripavirus. We detected RoWV-1 in various tissues and life stages of the parasitoid wasp, with the highest virus load measured in the larval digestive tract. We demonstrate that RoWV-1 is transmitted horizontally from infected to uninfected wasps but not vertically to wasp offspring. Comparison of several important 1234567890();,: 1234567890();,: biological parameters between the infected and uninfected wasps indicates that RoWV-1 does not have obvious detrimental effects on wasps. We further demonstrate that RoWV-1 also infects Drosophila melanogaster (Meigen, 1830), the hosts of the pupal ectoparasitoid wasps, and thereby increases its pupal developmental duration and fecundity, but decreases the eclosion rate. Together, these results suggest that RoWV-1 may have a potential benefit to the wasp by increasing not only the number of potential wasp hosts but also the developmental time of the hosts to ensure proper development of wasp offspring. -
Drosophila Responses in Immunity and Virus-Specific Inducible
The Journal of Immunology Broad RNA Interference–Mediated Antiviral Immunity and Virus-Specific Inducible Responses in Drosophila Cordula Kemp,*,1 Stefanie Mueller,*,1,2 Akira Goto,* Vincent Barbier,* Simona Paro,* Franc¸ois Bonnay,* Catherine Dostert,* Laurent Troxler,* Charles Hetru,* Carine Meignin,* Se´bastien Pfeffer,† Jules A. Hoffmann,* and Jean-Luc Imler*,‡ The fruit fly Drosophila melanogaster is a good model to unravel the molecular mechanisms of innate immunity and has led to some important discoveries about the sensing and signaling of microbial infections. The response of Drosophila to virus infections remains poorly characterized and appears to involve two facets. On the one hand, RNA interference involves the recognition and processing of dsRNA into small interfering RNAs by the host RNase Dicer-2 (Dcr-2), whereas, on the other hand, an inducible response controlled by the evolutionarily conserved JAK-STAT pathway contributes to the antiviral host defense. To clarify the contribution of the small interfering RNA and JAK-STAT pathways to the control of viral infections, we have compared the resistance of flies wild-type and mutant for Dcr-2 or the JAK kinase Hopscotch to infections by seven RNA or DNA viruses belonging to different families. Our results reveal a unique susceptibility of hop mutant flies to infection by Drosophila C virus and cricket paralysis virus, two members of the Dicistroviridae family, which contrasts with the susceptibility of Dcr-2 mutant flies to many viruses, including the DNA virus invertebrate iridescent virus 6. Genome-wide microarray analysis confirmed that different sets of genes were induced following infection by Drosophila C virus or by two unrelated RNA viruses, Flock House virus and Sindbis virus. -
Structure of the Triatoma Virus Capsid Crystallography ISSN 0907-4449
research papers Acta Crystallographica Section D Biological Structure of the Triatoma virus capsid Crystallography ISSN 0907-4449 Gae¨lle Squires,a‡§ Joan Pous,a‡} The members of the Dicistroviridae family are non-enveloped Received 3 December 2012 Jon Agirre,b,c‡ Gabriela S. Rozas- positive-sense single-stranded RNA (+ssRNA) viruses patho- Accepted 16 February 2013 Dennis,d,e Marcelo D. Costabel,e genic to beneficial arthropods as well as insect pests of medical f Gerardo A. Marti, Jorge importance. Triatoma virus (TrV), a member of this family, PDB Reference: TrV, 3nap Navaza,a‡‡ Ste´phane infects several species of triatomine insects (popularly named Bressanelli,a Diego M. A. kissing bugs), which are vectors for human trypanosomiasis, more commonly known as Chagas disease. The potential use Gue´rinb,c* and Felix A. Reya*§§ of dicistroviruses as biological control agents has drawn considerable attention in the past decade, and several viruses aLaboratoire de Virologie Mole´culaire et of this family have been identified, with their targets covering Structurale, CNRS, 1 Avenue de la Terrasse, honey bees, aphids and field crickets, among others. Here, the 91198 Gif-sur-Yvette CEDEX, France, crystal structure of the TrV capsid at 2.5 A˚ resolution is bFundacio´n Biofı´sica Bizkaia, Barrio Sarriena S/N, 48940 Leioa, Bizkaia (FBB), Spain, cUnidad reported, showing that as expected it is very similar to that of de Biofı´sica (UBF, CSIC, UPV/EHU), PO Box Cricket paralysis virus (CrPV). Nevertheless, a number of 644, 48080 Bilbao, Spain, dDepartamento de distinguishing structural features support the introduction of a Biologı´a, Bioquı´mica y Farmacia, U.N.S., new genus (Triatovirus; type species TrV) under the San Juan 670, (8000) Bahı´a Blanca, Argentina, Dicistroviridae family. -
Viral Metagenomics of Aphids Present in Bean and Maize Plots on Mixed
Wamonje et al. Virology Journal (2017) 14:188 DOI 10.1186/s12985-017-0854-x RESEARCH Open Access Viral metagenomics of aphids present in bean and maize plots on mixed-use farms in Kenya reveals the presence of three dicistroviruses including a novel Big Sioux River virus-like dicistrovirus Francis O. Wamonje1, George N. Michuki2,4, Luke A. Braidwood1, Joyce N. Njuguna3, J. Musembi Mutuku3, Appolinaire Djikeng3,5, Jagger J. W. Harvey3,6 and John P. Carr1* Abstract Background: Aphids are major vectors of plant viruses. Common bean (Phaseolus vulgaris L.) and maize (Zea mays L.) are important crops that are vulnerable to aphid herbivory and aphid-transmitted viruses. In East and Central Africa, common bean is frequently intercropped by smallholder farmers to provide fixed nitrogen for cultivation of starch crops such as maize. We used a PCR-based technique to identify aphids prevalent in smallholder bean farms and next generation sequencing shotgun metagenomics to examine the diversity of viruses present in aphids and in maize leaf samples. Samples were collected from farms in Kenya in a range of agro-ecological zones. Results: Cytochrome oxidase 1 (CO1) gene sequencing showed that Aphis fabae was the sole aphid species present in bean plots in the farms visited. Sequencing of total RNA from aphids using the Illumina platform detected three dicistroviruses. Maize leaf RNA was also analysed. Identification of Aphid lethal paralysis virus (ALPV), Rhopalosiphum padi virus (RhPV), and a novel Big Sioux River virus (BSRV)-like dicistrovirus in aphid and maize samples was confirmed using reverse transcription-polymerase chain reactions and sequencing of amplified DNA products.