Methane Fermentation Process As Anaerobic Digestion of Biomass: Transformations, Stages and Microorganisms

Total Page:16

File Type:pdf, Size:1020Kb

Methane Fermentation Process As Anaerobic Digestion of Biomass: Transformations, Stages and Microorganisms African Journal of Biotechnology Vol. 11(18), pp. 4127-4139, 1 March, 2012 Available online at http://www.academicjournals.org/AJB DOI: 10.5897/AJBX11.054 ISSN 1684–5315 © 2012 Academic Journals Review Methane fermentation process as anaerobic digestion of biomass: Transformations, stages and microorganisms Krzysztof Ziemiński1*, and Magdalena Frąc2 1Institute of Fermentation Technology and Microbiology, Technical University of Lodz, Poland. 2Department of Plant and Soil System, Institute of Agrophysics, Polish Academy of Sciences, ul.Doswiadczalna 4,. 20-290 Lublin, Poland. Accepted 3 February, 2012 Anaerobic decomposition of organic compounds is conducted in close cooperation of specialized bacteria of different types, including mostly hydrolyzing, digestive, acetogenic, homoacetogenic, sulfate-reducing (VI) and methanogenic bacteria. A great interest in the anaerobic digestion process results mainly from its advantages, as compared to aerobic methods. The main advantages of the methane digestion process are: Production of an insignificant amount of biomass and lower energy input, as compared to degradation conducted under aerobic conditions. This paper reviews the transformations, stages and microorganisms that participate in methane fermentation process. Key words: Biogas, methane fermentation, methanogens, microorganisms, anaerobic digestion. INTRODUCTION The demand of the world economy for electrical and 1 million equivalent hectares for energy crops may thermal energy in over 88% is covered from non- provide approximately 65 TWh energy in the primary fuel. renewable resources, mainly petroleum and natural gas The use of biogas, acquired in this way, for production of (IEA, 2006). The extraction, processing and combustion electrical energy and heat would allow the reduction of of these raw materials adversely affect the natural the annual emission of CO2 by about 57 million tons. environment, besides they are gradually exhausted The European Parliament Committee on Industry, (Energy, 1997; EC, 2007). According to forecasts, the External Trade, Research and Energy calls on to demand for fuels used for energy production will be increase efforts within the research on new technologies further increased. of using biogas as a biofuel. Studies are carried on to use The European Union’s energy policy aims at using biogas not only for the production of electrical energy and more and more unconventional sources of energy. It was heat but also to introduce it in the natural gas supplied assumed that up to 2010 in the European Union the network, which would allow to reduce Europe’s electrical energy produced in the environmentally friendly dependence on the import of natural gas from the third way would constitute 22.1% of the total amount of countries. In the European Union in 2007 the production produced energy. On the one hand, this is connected of biogas amounted to over 6 million tons. Since then, a with energy safety; on the other hand it contributes to 20% increase annually has been noted in the amount of improvement of the environment. Until 2050 the use of produced biogas (EuroObserver, 2008; Fachverband, modern technologies of energy acquisition should cause 2009). Biogas production from large quantities of 50% reduction of CO2 emission (IPCC, 2000). The use of agricultural residues, animal wastes, municipal and industrial wastes (water) appears to have potential as an alternative renewable energy for many African countries if relevant and appropriate research is carried out to adopt *Corresponding author. E-mail: [email protected]. Tel: +48 42 the biogas technology to the local conditions in African 636-36-39. countries (Mshandete and Parawira, 2009). Biogas is 4128 Afr. J. Biotechnol. presently obtained not only from landfill degasification, such as: Sewage sludge, manure, industrial wastewater anaerobic sludge digestion in wastewater treatment and organic fraction of municipal wastes (Classen et al., plants, but more and more often also from industrial 1999; Finstein, 2010; Verstraete et al, 2002). In the biogas-plants where the combined processing of organic process of biochemical degradation, the complex organic municipal and industrial wastes as well as sewage sludge com-pounds become decomposed to simple organic and is conducted (Mata-Alvarez et al., 2000; Weiland, 2010). inorganic compounds (Bryant, 1979). During the methane Such procedure is connected with drastic reduction of the digestion process, microbiological reduction of sulfates possibilities of landfilling organic wastes; in 2010 the (VI) to sulfides and hydrogen sulfide occurs along with mass of biodegradable wastes was reduced to 75% as anaerobic ammonification and reduction of nitrates (V) to compared to the wastes disposed in 1995. ammonia. Apart from assimilative reduction of nitrates (V), denitrification may occur (Scherer et al., 2000). Initial stages of anaerobic metabolism are similar to PROCESS OF ANAEROBIC DIGESTION those of aerobic processes. When dissolved oxygen is Methane digestion is a complex, reduction process of a missing, some chemolithotrophic organisms make use of number of biochemical reactions occurring under oxidized mineral compounds (sulfates (VI) and nitrates anaerobic conditions. Under symbiotic effects of various (V)) as the final acceptor of hydrogen. Oxidation anaerobic and relatively anaerobic bacteria, multi mole- proceeds then, as under aerobic conditions, through the cular organic substances are decomposed into simple, respiratory chain, but the final products are respectively chemically stabilized compounds – mainly of methane hydrogen or molecular nitrogen and energy (Santosh et and carbon dioxide (Naik et al., 2010). Generally, this al., 2004). The process of digestion releases into the process consists of liquefaction and hydrolysis of environment the high energy final products, such as insoluble compounds and gasification of intermediate alcohol or methane. Methane digestion is a complex products. This is accompanied by a partial or complete process which undergoes four phases: Hydrolysis, mineralization and humification of organic substance acidogenesis – acidification phase, acetogenesis, (Lyberatos and Skiadas, 1999). An advantage of the methanogenesis (Figure 1). Involved in biochemical process of anaerobic digestion is production of biogas, a conversions of H2 and CO2 to methane and acetate to high energy fuel which may be used to produce environ- methane and CO2 are various enzymes and prosthetic mentally-friendly energy. It is basically for this reason that groups which occur only in methanogenes. The basic scientists and power industry companies have been structures of these compounds are presented in Figure 2 interested in anaerobic digestion for almost 140 years. and comprise: Deazariboflavine derivative F420, Biotechnology of biogas production usually refers to methanopterin, methanofurane, nickel-tetrapyrol factor digestion of various types of organic wastes, food F430 and coenzyme M (mercaptan sulfonate). Autotrophic industry wastewater, sewage sludge, animal excrements binding of CO2 by methanogenes occurs without a share or organic fraction of municipal wastes etc. In some of the reaction of ribulose-bisphosphatic cycle. Synthesis countries subjected to anaerobic digestion are plants of cellular material with CO2 occurs through the reductive deliberately grown for this purpose, e.g. maize (Boone et pathway of aceto-CoA with pyruvate (Mashaphu, 2005; al., 1993; Mata-Alvarez et al., 2000). Currently in many Saxena et al., 2009). European countries, the production of biomass as a At the first stage of the process, CO2 is bound by substrate for the biogas plants has developed. In the methanofurane (MFR) which is then reduced to methenyl, most extreme European case, the government of methylene, methyl and at the final stage – methane, Germany has taken steps in 2011 to reduce even mono- which is bound in turn by coenzymes: Tetrahy- culture maize production for energy purposes (Graaf and dromethanopterin, 2-methylthioethanesulfonic acid and 2- Fendler, 2010; Weiland, 2010). mercaptoethanesulfonic acid (Medigan et al., 2000). Digestion connected with biogas production may play a Hydrogenase accounts for assimilation of H2. As a result triple part. First, it is a method of converting the energy of activation of hydrogen by hydrogenases which react contained in biomass into a useful fuel (biogas) which with factor F420, a reducing force is provided. Most may be stored and transported. Second, it is a method of methanogenes use H2 as a source of electrons, which is recycling of organic wastes into stable soil additives, that connected with the occurrence of hydrogenases. is, valuable liquid fertilizer and energy. Third, it is a Methanopterin accounts for the stage of the reduction method of wastes treatment aimed at a reduction of their of CO2 to methyl groups of pyruvate. Methyl groups in the hazardous effects on the environment. carbonylation process are converted into carbonyl groups with a share of carbon monoxide dehydrogenase enzyme (Mashaphu, 2005; Saxena et al., 2009). Involved in TRANSFORMATIONS OF METHANE FERMENTATION methanogenesis pathway are many coenzymes which do PROCESS not have any flavinic or quinonic groups (Figure 2). Metabolism of methanogenesis is unique, because it runs Methane digestion is used for stabilization of wastes, along the pathway which requires coenzymes which do Zieminski and Frac 4129 Figure 1. Stages of methane fermentation process Coenzyme – F 420 Methanopterin
Recommended publications
  • Open Dissertation 4-7-09.Pdf
    The Pennsylvania State University The Graduate School Department of Civil and Environmental Engineering IMPROVED ANAEROBIC DIGESTER STABILITY TO ORGANIC LOADING RATE SHOCKS WITH THE USE OF AN ENVIRONMENTALLY DERIVED INOCULUM A Dissertation in Environmental Engineering and Biogeochemistry by Lisa Marie Steinberg © 2009 Lisa Marie Steinberg Submitted in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy May 2009 The dissertation of Lisa Marie Steinberg was reviewed and approved* by the following: John Regan Associate Professor of Environmental Engineering Dissertation Advisor Chair of Committee Christopher House Associate Professor of Geosciences Bruce Logan Kappe Professor of Environmental Engineering Jenn Macalady Assistant Professor of Geosciences Peggy Johnson Department Head and Professor of Civil Engineering *Signatures are on file in the Graduate School ABSTRACT Anaerobic digestion broadly describes technology that utilizes microorganisms to break down organic matter under anaerobic conditions through the coordinated efforts of several trophic groups of microorganisms. The last step is catalyzed by methanogens which produce primarily methane, carbon dioxide, and water as products of metabolism. Anaerobic digestion occurs naturally in a variety of water-saturated sediments, but is also used to treat waste in constructed reactors. There are a number of advantages to treating waste with anaerobic digestion, but perhaps the greatest is that waste treatment can be coupled to energy generation by the production of a methane-rich biogas. Despite the advantages, anaerobic digestion is severely under-utilized in waste treatment mainly due to the belief that anaerobic digesters are less stable than aerobic treatment processes. Anaerobic digesters are typically operated under warm temperatures and circumneutral pH, with operation outside of these conditions leading to instability and potential reactor failure.
    [Show full text]
  • Taxonomy and Ecology of Methanogens
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Horizon / Pleins textes FEMS Microbiology Reviews 87 (1990) 297-308 297 Pubfished by Elsevier FEMSRE 00180 Taxonomy and ecology of methanogens J.L. Garcia Laboratoire de Microbiologie ORSTOM, Université de Provence, Marseille, France Key words: Methanogens; Archaebacteria; Taxonomy; Ecology 1. INTRODUCTION methane from CO2 using alcohols as hydrogen donors; 2-propanol is oxidized to acetone, and More fhan nine reviews on taxonomy of 2-butanol to 2-butanone. Carbon monoxide may methanogens have been published during the last also be converted into methane; most hydro- decade [l-91, after the discovery of the unique genotrophic species (60%) will also use formate. biochemical and genetic properties of these Some aceticlastic species are incapable of oxidiz- organisms led to the concept of Archaebacteria at ing H,. The aceticlastic species of the genus the end of the seventies. Moreover, important Methanosurcina are the most metabolically diverse economic factors have ,placed these bacteria in the methanogens, whereas the obligate aceticlastic limelight [5], including the need to develop alter- Methanosaeta (Methanothrix) can use only acetate. native forms of energy, xenobiotic pollution con- The taxonomy of the methanogenic bacteria trol, the enhancement of meat yields in the cattle has been extensively revised in the light of new industry, the distinction between biological and information based on comparative studies of 16 S thermocatalytic petroleum generation, and the rRNA oligonucleotide sequences, membrane lipid global distribution of methane in the earth's atmo- composition, and antigenic fingerprinting data. sphere. The phenotypic characteristics often do not pro- vide a sufficient means of distinguishing among taxa or determining the phylogenetic position of a 2.
    [Show full text]
  • Total Extracellular Small RNA Profiles from Plasma, Saliva, and Urine Of
    www.nature.com/scientificreports OPEN Total Extracellular Small RNA Profiles from Plasma, Saliva, and Urine of Healthy Subjects Received: 18 October 2016 Ashish Yeri1, Amanda Courtright1, Rebecca Reiman1, Elizabeth Carlson1, Taylor Beecroft1, Accepted: 01 February 2017 Alex Janss1, Ashley Siniard1, Ryan Richholt1, Chris Balak1, Joel Rozowsky2, Robert Kitchen2, Published: 17 March 2017 Elizabeth Hutchins1, Joseph Winarta1, Roger McCoy3, Matthew Anastasi3, Seungchan Kim4, Matthew Huentelman1 & Kendall Van Keuren-Jensen1 Interest in circulating RNAs for monitoring and diagnosing human health has grown significantly. There are few datasets describing baseline expression levels for total cell-free circulating RNA from healthy control subjects. In this study, total extracellular RNA (exRNA) was isolated and sequenced from 183 plasma samples, 204 urine samples and 46 saliva samples from 55 male college athletes ages 18–25 years. Many participants provided more than one sample, allowing us to investigate variability in an individual’s exRNA expression levels over time. Here we provide a systematic analysis of small exRNAs present in each biofluid, as well as an analysis of exogenous RNAs. The small RNA profile of each biofluid is distinct. We find that a large number of RNA fragments in plasma (63%) and urine (54%) have sequences that are assigned to YRNA and tRNA fragments respectively. Surprisingly, while many miRNAs can be detected, there are few miRNAs that are consistently detected in all samples from a single biofluid, and profiles of miRNA are different for each biofluid. Not unexpectedly, saliva samples have high levels of exogenous sequence that can be traced to bacteria. These data significantly contribute to the current number of sequenced exRNA samples from normal healthy individuals.
    [Show full text]
  • Contents Topic 1. Introduction to Microbiology. the Subject and Tasks
    Contents Topic 1. Introduction to microbiology. The subject and tasks of microbiology. A short historical essay………………………………………………………………5 Topic 2. Systematics and nomenclature of microorganisms……………………. 10 Topic 3. General characteristics of prokaryotic cells. Gram’s method ………...45 Topic 4. Principles of health protection and safety rules in the microbiological laboratory. Design, equipment, and working regimen of a microbiological laboratory………………………………………………………………………….162 Topic 5. Physiology of bacteria, fungi, viruses, mycoplasmas, rickettsia……...185 TOPIC 1. INTRODUCTION TO MICROBIOLOGY. THE SUBJECT AND TASKS OF MICROBIOLOGY. A SHORT HISTORICAL ESSAY. Contents 1. Subject, tasks and achievements of modern microbiology. 2. The role of microorganisms in human life. 3. Differentiation of microbiology in the industry. 4. Communication of microbiology with other sciences. 5. Periods in the development of microbiology. 6. The contribution of domestic scientists in the development of microbiology. 7. The value of microbiology in the system of training veterinarians. 8. Methods of studying microorganisms. Microbiology is a science, which study most shallow living creatures - microorganisms. Before inventing of microscope humanity was in dark about their existence. But during the centuries people could make use of processes vital activity of microbes for its needs. They could prepare a koumiss, alcohol, wine, vinegar, bread, and other products. During many centuries the nature of fermentations remained incomprehensible. Microbiology learns morphology, physiology, genetics and microorganisms systematization, their ecology and the other life forms. Specific Classes of Microorganisms Algae Protozoa Fungi (yeasts and molds) Bacteria Rickettsiae Viruses Prions The Microorganisms are extraordinarily widely spread in nature. They literally ubiquitous forward us from birth to our death. Daily, hourly we eat up thousands and thousands of microbes together with air, water, food.
    [Show full text]
  • Quantitative Detection of Culturable Methanogenic Archaea Abundance in Anaerobic Treatment Systems Using the Sequence-Specific Rrna Cleavage Method
    The ISME Journal (2009) 3, 522–535 & 2009 International Society for Microbial Ecology All rights reserved 1751-7362/09 $32.00 www.nature.com/ismej ORIGINAL ARTICLE Quantitative detection of culturable methanogenic archaea abundance in anaerobic treatment systems using the sequence-specific rRNA cleavage method Takashi Narihiro1, Takeshi Terada1, Akiko Ohashi1, Jer-Horng Wu2,4, Wen-Tso Liu2,5, Nobuo Araki3, Yoichi Kamagata1,6, Kazunori Nakamura1 and Yuji Sekiguchi1 1Institute for Biological Resources and Functions, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, Japan; 2Division of Environmental Science and Engineering, National University of Singapore, Singapore and 3Department of Civil Engineering, Nagaoka National College of Technology, Nagaoka, Japan A method based on sequence-specific cleavage of rRNA with ribonuclease H was used to detect almost all known cultivable methanogens in anaerobic biological treatment systems. To do so, a total of 40 scissor probes in different phylogeny specificities were designed or modified from previous studies, optimized for their specificities under digestion conditions with 32 methanogenic reference strains, and then applied to detect methanogens in sludge samples taken from 6 different anaerobic treatment processes. Among these processes, known aceticlastic and hydrogenotrophic groups of methanogens from the families Methanosarcinaceae, Methanosaetaceae, Methanobacter- iaceae, Methanothermaceae and Methanocaldococcaceae could be successfully detected and
    [Show full text]
  • Application for Approval to Import Into Containment Any New Organism That
    ER-AN-02N 10/02 Application for approval to import into FORM 2N containment any new organism that is not genetically modified, under Section 40 of the Page 1 Hazardous Substances and New Organisms Act 1996 FORM NO2N Application for approval to IMPORT INTO CONTAINMENT ANY NEW ORGANISM THAT IS NOT GENETICALLY MODIFIED under section 40 of the Hazardous Substances and New Organisms Act 1996 Application Title: Importation of extremophilic microorganisms from geothermal sites for research purposes Applicant Organisation: Institute of Geological & Nuclear Sciences ERMA Office use only Application Code: Formally received:____/____/____ ERMA NZ Contact: Initial Fee Paid: $ Application Status: ER-AN-02N 10/02 Application for approval to import into FORM 2N containment any new organism that is not genetically modified, under Section 40 of the Page 2 Hazardous Substances and New Organisms Act 1996 IMPORTANT 1. An associated User Guide is available for this form. You should read the User Guide before completing this form. If you need further guidance in completing this form please contact ERMA New Zealand. 2. This application form covers importation into containment of any new organism that is not genetically modified, under section 40 of the Act. 3. If you are making an application to import into containment a genetically modified organism you should complete Form NO2G, instead of this form (Form NO2N). 4. This form, together with form NO2G, replaces all previous versions of Form 2. Older versions should not now be used. You should periodically check with ERMA New Zealand or on the ERMA New Zealand web site for new versions of this form.
    [Show full text]
  • Metabolische Modellierung Thermophiler Prokaryoten
    Metabolische Modellierung thermophiler Prokaryoten Von der Fakultät für Lebenswissenschaften der Technischen Universität Carolo-Wilhelmina zu Braunschweig zur Erlangung des Grades eines Doktors der Naturwissenschaften (Dr. rer. nat.) genehmigte D i s s e r t a t i o n von Helge Sebastian Stark aus Braunschweig 1. Referent: Prof. Dr. Dietmar Schomburg 2. Referent Prof. Dr. Dieter Jahn eingereicht am: 26.04.2017 mündliche Prüfung (Disputation) am: 27.06.2017 Druckjahr 2017 Vorveröffentlichung der Dissertation Teilergebnisse aus dieser Arbeit wurden mit Genehmigung der Fakultät für Lebenswissenschaften, vertreten durch den Mentor der Arbeit, in folgenden Beiträgen vorab veröffentlicht. Publikationen Stark, H., Wolf, J., Albersmeier, A., Pham, T. K., Hofmann, J. D., Siebers, B., Kalinowski, J., Wright, P. C., Neumann-Schaal, M. and Schomburg, D. (2017), Oxidative Stickland reactions in an obligate aerobic organism – amino acid catabolism in the Crenarchaeon Sulfolobus solfataricus. FEBS J, 284: 2078–2095. Wolf, J., Stark, H., Fafenrot, K., Albersmeier, A., Pham, T. K., Müller, K. B., Meyer, B. H., Hoffmann, L., Shen, L., Albaum, S. P., Kouril, T., Schmidt-Hohagen, K., Neumann-Schaal, M., Bräsen, C., Kalinowski, J., Wright, P. C., Albers, S.-V., Schomburg, D. and Siebers, B. (2016), A systems biology approach reveals major metabolic changes in the thermoacidophilic archaeon Sulfolobus solfataricus in response to the carbon source L-fucose versus D-glucose. Molecular Microbiology, 102: 882–908. Posterbeiträge Stark, H., Wolf, J., Müller, K., Albaum, S., Albersmeier, A., Pham, T.K., Schomburg, D. (2015), Systems biology reveals a novel L-fucose degradation pathway in the archaeon Sulfolobus solfataricus. Poster präsentiert auf dem e:Bio Innovation Competition Systems Biology Status Seminar, Berlin, Deutschland.
    [Show full text]
  • Supplementary Material For: Undinarchaeota Illuminate The
    Supplementary Material for: Undinarchaeota illuminate the evolution of DPANN archaea Nina Dombrowski1, Tom A. Williams2, Benjamin J. Woodcroft3, Jiarui Sun3, Jun-Hoe Lee4, Bui Quang MinH5, CHristian Rinke5, Anja Spang1,5,# 1NIOZ, Royal NetHerlands Institute for Sea ResearcH, Department of Marine Microbiology and BiogeocHemistry, and UtrecHt University, P.O. Box 59, NL-1790 AB Den Burg, THe NetHerlands 2 ScHool of Biological Sciences, University of Bristol, Bristol, BS8 1TQ, UK 3Australian Centre for Ecogenomics, ScHool of CHemistry and Molecular Biosciences, THe University of Queensland, QLD 4072, Australia 4Department of Cell- and Molecular Biology, Science for Life Laboratory, Uppsala University, SE-75123, Uppsala, Sweden 5ResearcH ScHool of Computer Science and ResearcH ScHool of Biology, Australian National University, ACT 2601, Australia #corresponding autHor. Postal address: Landsdiep 4, 1797 SZ 't Horntje (Texel). Email address: [email protected]. PHone number: +31 (0)222 369 526 Table of Contents Table of Contents 2 General 3 Evaluating CHeckM completeness estimates 3 Screening for contaminants 3 Phylogenetic analyses 4 Informational processing and repair systems 7 Replication and cell division 7 Transcription 7 Translation 8 DNA-repair and modification 9 Stress tolerance 9 Metabolic features 10 Central carbon and energy metabolism 10 Anabolism 13 Purine and pyrimidine biosyntHesis 13 Amino acid degradation and biosyntHesis 14 Lipid biosyntHesis 15 Vitamin and cofactor biosyntHesis 16 Host-symbiont interactions 16 Genes potentially
    [Show full text]
  • Reclassification of Methanogenium Tationis and Methanogenium Liminatans As Methanofollis Tationis Gen. Nov., Comb. Now and Methanofollis Lirninatans Comb
    international Journal of Systematic Bacteriology (1999), 49, 247-255 Printed in Great Britain Reclassification of Methanogenium tationis and Methanogenium liminatans as Methanofollis tationis gen. nov., comb. now and Methanofollis lirninatans comb. nov. and description of a new strain of Methanofollis liminatans Gerhard Zellner,’ David R. Boone,’ Jyoti Ke~wani,~William B. Whitman,3 Carl R. W~ese,~Anja Hagelstein,’ B. J. Tindal15 and Erko Stackebrandt’ Author for correspondence : Gerhard Zellner. Tel: + 49 89 3 187 2579. Fax : + 49 89 3 187 3361. e-mail : [email protected] 1 Institute of Hydrology, Sequencing of 165 rRNA genes and phylogenetic analysis of Methanogenium GSF National Research - tationis DSM 2702T(OCM 433 (T = type strain) and Methanogenium liminatans Center for Environment and Health, Ingolstadter GKZPZT (= DSM 41403 as well as other members of the family LandstraBe 1, D-85764 Methanomicrobiaceae revealed that both species belong to a separate line of Neuherberg, descent within this family. In addition, a new strain of Methanogenium Germany liminatans, strain BM1 (= DSM 10196), was isolated from a butyrate- * Oregon Graduate Institute degrading, fluidized bed reactor and characterized. Cells of both species are of Science and Technology, Portland, OR 97291 -1000, mesophilic, highly irregular cocci that use HJCO, and formate for growth and USA methanogenesis. In addition, Methanogenium liminatans strains GKZPZT and 3 Department of BMI used 2-propanol/C02, 2-butanol/C02 and cyclopentanol/CO,. Both species Microbiology, University of contained diether and tetraether lipids. The polar lipids comprised amino- Georgia, 527 Biological phosphopentanetetrol derivatives, which appear to be characteristic Iipids Sciences Building, Athens, GA 30602-2605, USA within the family Methanomicrobiaceae.
    [Show full text]
  • Interactions Between Anaerobic Fungi and Methanogens in the Rumen and Their Biotechnological Potential in Biogas Production from Lignocellulosic Materials
    microorganisms Review Interactions between Anaerobic Fungi and Methanogens in the Rumen and Their Biotechnological Potential in Biogas Production from Lignocellulosic Materials Yuqi Li 1 , Zhenxiang Meng 1, Yao Xu 1, Qicheng Shi 1, Yuping Ma 1, Min Aung 1,2, Yanfen Cheng 1,* and Weiyun Zhu 1 1 Laboratory of Gastrointestinal Microbiology, National Center for International Research on Animal Gut Nutrition, Nanjing Agricultural University, Nanjing 210095, China; [email protected] (Y.L.); [email protected] (Z.M.); [email protected] (Y.X.); [email protected] (Q.S.); [email protected] (Y.M.); [email protected] (M.A.); [email protected] (W.Z.) 2 Department of Animal Nutrition, University of Veterinary Science, Nay Pyi Taw 15013, Myanmar * Correspondence: [email protected]; Tel.: +86-25-84395523 Abstract: Anaerobic fungi in the digestive tract of herbivores are one of the critical types of fiber- degrading microorganisms present in the rumen. They degrade lignocellulosic materials using unique rhizoid structures and a diverse range of fiber-degrading enzymes, producing metabolic products such as H2/CO2, formate, lactate, acetate, and ethanol. Methanogens in the rumen utilize some of these products (e.g., H2 and formate) to produce methane. An investigation of the interac- tions between anaerobic fungi and methanogens is helpful as it provides valuable insight into the microbial interactions within the rumen. During the last few decades, research has demonstrated that anaerobic fungi stimulate the growth of methanogens and maintain methanogenic diversity. Meanwhile, methanogens increase the fiber-degrading capability of anaerobic fungi and stimulate Citation: Li, Y.; Meng, Z.; Xu, Y.; Shi, metabolic pathways in the fungal hydrogenosome.
    [Show full text]
  • Extracellular Electron Uptake in Methanosarcinales Is Independent of Multiheme
    bioRxiv preprint doi: https://doi.org/10.1101/747485; this version posted August 28, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 1 Extracellular electron uptake in Methanosarcinales is independent of multiheme 2 c-type cytochromes 3 Mon Oo Yee1 & Amelia-Elena Rotaru1 4 1Nordcee, Department of Biology, University of Southern Denmark, Odense, Denmark 5 6 Correspondence: [email protected] 7 8 Keywords: 9 multiheme c-type cytochromes, direct interspecies electron transfer, Methanosarcina, Methanothrix, 10 Methanosarcina mazei, electromethanogenesis, Rhodoferax ferrireducens, Geobacter hydrogenophilus, 11 Geobacter metallireducens 12 13 14 15 16 17 18 19 bioRxiv preprint doi: https://doi.org/10.1101/747485; this version posted August 28, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 20 Abstract 21 The co-occurrence of Geobacter and Methanosarcinales is often used as a proxy for the manifestation of 22 direct interspecies electron transfer (DIET) in man-made and natural aquatic environments. We previously 23 reported that not all Geobacter are capable of DIET with Methanosarcina. Here we tested 15 new artificial 24 co-culture combinations with methanogens and electrogenic bacteria, including an electrogen outside of the 25 Geobacter clade – Rhodoferax ferrireducens. 26 Consistently, highly effective electrogenic bacteria (G.
    [Show full text]
  • Insights Into the Ecological Roles and Evolution of Methyl-Coenzyme M Reductase-Containing Hot Spring Archaea
    ARTICLE https://doi.org/10.1038/s41467-019-12574-y OPEN Insights into the ecological roles and evolution of methyl-coenzyme M reductase-containing hot spring Archaea Zheng-Shuang Hua1,2,14, Yu-Lin Wang3,14, Paul N. Evans4,14, Yan-Ni Qu1, Kian Mau Goh 5, Yang-Zhi Rao 1, Yan-Ling Qi1, Yu-Xian Li1, Min-Jun Huang2, Jian-Yu Jiao1, Ya-Ting Chen1, Yan-Ping Mao3,6, Wen-Sheng Shu7, Wael Hozzein 8,9, Brian P. Hedlund 10,11, Gene W. Tyson 4,12*, Tong Zhang3* & Wen-Jun Li 1,13* 1234567890():,; Several recent studies have shown the presence of genes for the key enzyme associated with archaeal methane/alkane metabolism, methyl-coenzyme M reductase (Mcr), in metagenome-assembled genomes (MAGs) divergent to existing archaeal lineages. Here, we study the mcr-containing archaeal MAGs from several hot springs, which reveal further expansion in the diversity of archaeal organisms performing methane/alkane metabolism. Significantly, an MAG basal to organisms from the phylum Thaumarchaeota that contains mcr genes, but not those for ammonia oxidation or aerobic metabolism, is identified. Together, our phylogenetic analyses and ancestral state reconstructions suggest a mostly vertical evolution of mcrABG genes among methanogens and methanotrophs, along with frequent horizontal gene transfer of mcr genes between alkanotrophs. Analysis of all mcr-containing archaeal MAGs/genomes suggests a hydrothermal origin for these microorganisms based on optimal growth temperature predictions. These results also suggest methane/alkane oxida- tion or methanogenesis at high temperature likely existed in a common archaeal ancestor. 1 State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, 510275 Guangzhou, PR China.
    [Show full text]