EVALUATION of DRUG CANDIDATES for PRECLINICAL DEVELOPMENT Pharmacokinetics, Metabolism, Pharmaceutics, and Toxicology

Total Page:16

File Type:pdf, Size:1020Kb

EVALUATION of DRUG CANDIDATES for PRECLINICAL DEVELOPMENT Pharmacokinetics, Metabolism, Pharmaceutics, and Toxicology EVALUATION OF DRUG CANDIDATES FOR PRECLINICAL DEVELOPMENT Pharmacokinetics, Metabolism, Pharmaceutics, and Toxicology Edited by CHAO HAN Centocor Research and Development Inc. CHARLES B. DAVIS GlaxoSmithKline BINGHE WANG Georgia State University A JOHN WILEY & SONS, INC., PUBLICATION EVALUATION OF DRUG CANDIDATES FOR PRECLINICAL DEVELOPMENT drug discovery-cp.qxd 11/14/2009 7:40 AM Page 1 Wiley Series in Drug Discovery and Development Binghe Wang, Series Editor Drug Delivery: Principles and Applications Edited by Binghe Wang, Teruna Siahaan, and Richard A. Soltero Computer Applications in Pharmaceutical Research and Development Edited by Sean Ekins Glycogen Synthase Kinase-3 (GSK-3) and Its Inhibitors: Drug Discovery and Development Edited by Ana Martinez, Ana Castro, and Miguel Medina Drug Transporters: Molecular Characterization and Role in Drug Disposition Edited by Guofeng You and Marilyn E. Morris Aminoglycoside Antibiotics: From Chemical Biology to Drug Discovery Edited by Dev P. Arya Drug-Drug Interactions in Pharmaceutical Development Edited by Albert P. Li Dopamine Transporters: Chemistry, Biology, and Pharmacology Edited by Mark L. Trudell and Sari Izenwasser Drug Design of Zinc-Enzyme Inhibitors: Functional, Structural, and Disease Applications Edited by Claudiu T. Supuran and Jean-Yves Winum ABC Transporters and Multidrug Resistance Edited by Ahcene Boumendjel, Jean Boutonnat, and Jacques Robert Kinase Inhibitor Drugs Edited by Rongshi Li and Jeffrey A. Stafford Evaluation of Drug Candidates for Preclinical Development: Pharmacokinetics, Metabolism, Pharmaceutics, and Toxicology Edited by Chao Han, Charles B. Davis, and Binghe Wang EVALUATION OF DRUG CANDIDATES FOR PRECLINICAL DEVELOPMENT Pharmacokinetics, Metabolism, Pharmaceutics, and Toxicology Edited by CHAO HAN Centocor Research and Development Inc. CHARLES B. DAVIS GlaxoSmithKline BINGHE WANG Georgia State University A JOHN WILEY & SONS, INC., PUBLICATION Copyright © 2010 by John Wiley & Sons, Inc. All rights reserved. Published by John Wiley & Sons, Inc., Hoboken, New Jersey Published simultaneously in Canada No part of this publication may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying, recording, scanning, or otherwise, except as permitted under Section 107 or 108 of the 1976 United States Copyright Act, without either the prior written permission of the Publisher, or authorization through payment of the appropriate per-copy fee to the Copyright Clearance Center, Inc., 222 Rosewood Drive, Danvers, MA 01923, (978) 750-8400, fax (978) 750-4470, or on the web at www.copyright.com. Requests to the Publisher for permission should be addressed to the Permissions Department, John Wiley & Sons, Inc., 111 River Street, Hoboken, NJ 07030, (201) 748-6011, fax (201) 748-6008, or online at http://www.wiley.com/go/permission. Limit of Liability/Disclaimer of Warranty: While the publisher and author have used their best efforts in preparing this book, they make no representations or warranties with respect to the accuracy or completeness of the contents of this book and specifi cally disclaim any implied warranties of merchantability or fi tness for a particular purpose. No warranty may be created or extended by sales representatives or written sales materials. The advice and strategies contained herein may not be suitable for your situation. You should consult with a professional where appropriate. Neither the publisher nor author shall be liable for any loss of profi t or any other commercial damages, including but not limited to special, incidental, consequential, or other damages. For general information on our other products and services or for technical support, please contact our Customer Care Department within the United States at (800) 762-2974, outside the United States at (317) 572-3993 or fax (317) 572-4002. Wiley also publishes its books in a variety of electronic formats. Some content that appears in print may not be available in electronic formats. For more information about Wiley products, visit our web site at www.wiley.com. Library of Congress Cataloging-in-Publication Data: Evaluation of drug candidates for preclinical development : pharmacokinetics, metabolism, pharmaceutics, and toxicology / [edited by] Chao Han, Charles B. Davis, Binghe Wang. p. ; cm. Includes index. ISBN 978-0-470-04491-9 (cloth) 1. Drug development. 2. Pharmacokinetics. 3. Drugs–Metabolism. I. Han, Chao. II. Davis, Charles B. (Charles Baldwin) III. Wang, Binghe, PhD. [DNLM: 1. Drug Evaluation, Preclinical. 2. Drug Discovery. 3. Drug Industry– standards. 4. Pharmaceutical Preparations–metabolism. 5. Pharmacology–methods. QV 771 E917 2010] RM301.25.E93 2010 615′.19–dc22 2009035876 Printed in the United States of America 10 9 8 7 6 5 4 3 2 1 CONTENTS PREFACE vii CONTRIBUTORS ix 1. INTRODUCTION 1 Charles B. Davis 2. PHARMACOKINETICS IN PRECLINICAL DRUG DEVELOPMENT: AN OVERVIEW 11 Dion Brocks 3. THE ROLE OF MEMBRANE TRANSPORTERS IN DRUG DISPOSITION 39 Fanfan Zhou, Peng Duan, and Guofeng You 4. CYTOCHROME P450: STRUCTURE, FUNCTION, AND APPLICATION IN DRUG DISCOVERY AND DEVELOPMENT 55 Ramesh B. Bambal and Stephen E. Clarke 5. THE ROLE OF DRUG METABOLISM AND METABOLITE IDENTIFICATION IN DRUG DISCOVERY 109 Xiangming Guan 6. PROTEIN BINDING IN DRUG DISCOVERY AND DEVELOPMENT 135 Vikram Ramanathan and Nimish Vachharajani v vi CONTENTS 7. PREDICTION OF THE PHARMACOKINETICS IN HUMANS 169 Chao Han and Ramesh Bambal 8. PHARMACEUTICS DEVELOPABILITY ASSESSMENT 187 Lian Huang, Jinquan Dong, and Shyam Karki 9. SAFETY ASSESSMENT IN DRUG DISCOVERY 221 Vito G. Sasseville, William R. Foster, and Bruce D. Car 10. ASSESSMENT OF STRATEGIES UTILIZED TO MINIMIZE THE POTENTIAL FOR INDUCTION OF ACQUIRED LONG QT SYNDROME AND TORSADE DE POINTES 253 Khuram W. Chaudhary and Barry S. Brown INDEX 281 PREFACE In the past two decades, the pharmaceutical industry has experienced tremendous transformation. There have been signifi cant scientifi c advances with the potential to revolutionize the treatment of human disease. Advanced technologies and automation have increased effi - ciency in the laboratory. Productivity of the industry as a whole, however, has not met the high expectations of society. As mature products lose patent protection pharmaceutical companies have strug- gled to fi ll gaps in their pipelines. Reorganization in the industry is commonplace; a wave of mega - mergers is under way as this book goes to press. Despite these challenges, small biotechnology companies and academic researchers continue to enter the fray, and competition in the industry remains fi erce. Outsourcing of diverse discovery and develop- ment activities is increasingly common as the industry attempts to minimize infrastructure and maximize fi nancial fl exibility. These adap- tations refl ect the high attrition rates experienced during development, increasing costs, and the increased expectations of society that new medicines will be safe, effective, and affordable. It is in this complex and dynamic context that we edit this book on the preclinical evalua- tion of drug candidates. We believe that selecting the “ right ” drug candidate for develop- ment is key to success. To lower attrition rates during early clinical development, pharmaceutical as well as pharmacological properties of the molecule should be optimized. This undertaking requires good science, perseverance, and often luck. There is precedence that the evaluation and optimization of pharmacokinetic properties early in drug discovery has a positive impact on the effort to lower attrition rates. We believe this example can be extended further and that a comprehensive evaluation of candidate developability at an early stage is an essential step. This book presents three major scientifi c areas: pharmacokinetics and drug metabolism, pharmaceutical development, and safety assess- vii viii PREFACE ment. The various properties of a new chemical entity are typically evaluated by groups of scientists with diverse backgrounds and exqui- site specialization, often working in isolation. Given the great potential for experimental fi ndings in one discipline to profoundly infl uence outcomes in another, integration is essential. Our goal is not to empha- size the leading edge of science and technology but rather to stress the integration of activities and information essential for the advancement of new medicines during drug development. We expect this book will enhance the formulation of appropriate strategies for compound pro- gression and improve decision- making. We hope this book will be valuable to readers from academia, industry, and service organizations, and thank the contributors for their dedication and patience. C hao H an Centocor Research and Development Inc. C harles B. D avis GlaxoSmithKline Pharmaceuticals B inghe W ang Georgia State University CONTRIBUTORS R amesh B. B ambal , Absorption Systems, Exton, Pennsylvania D ion R. B rocks , University of Alberta, Edmonton, AB, Canada B arry S. B rown , Department of Safety Pharmacology, GlaxoSmithKline B ruce D. C ar , Bristol - Myers Squibb Research and Development K huram W. C haudhary , Department of Safety Pharmacology, GlaxoSmithKline S tephen E. C larke , Preclinical Development, Drug Metabolism and Pharmacokinetics, GlaxoSmithKline Pharmaceuticals, Ware, United Kingdom C harles B. D avis , Cancer Research, GlaxoSmithKline Pharmaceu- ticals J inquan D ong , Johnson & Johnson PRD P eng D uan , Department of Pharmaceutics, Rutgers University W illiam
Recommended publications
  • Freundlich CV
    Joel S. Freundlich Department of Pharmacology, Physiology & Neuroscience Department of Medicine Center for Emerging and Reemerging Pathogens Rutgers University – New Jersey Medical School Medical Sciences Building, I503 185 South Orange Avenue Newark, NJ 07103 [email protected] (973) 972-7165 (office) (609)-865-7344 (cell) ____________________________________________________________________ RESEARCH INTERESTS Dr. Freundlich leads a research group of eleven scientists pursuing the development and application of computational, chemical, and biological platforms to study infectious diseases. • How do antibacterial small molecules leverage the modulation of more than one target to achieve significant cidality? • How are potent antibacterial agents metabolized by the mammalian host or the bacterium in detoxification and/or activation events with a specific focus on achieving a quantitative mass balance? • How may the properties (physiochemical, ADME, biological) of chemical tools be predicted and then evolved via machine learning methodologies? PROFESSIONAL EXPERIENCE RUTGERS UNIVERSITY-NEW JERSEY MEDICAL SCHOOL, Newark, NJ July 2017 to present Associate professor with Tenure (Department of Pharmacology & Physiology) Associate professor with Tenure (Department of Medicine) Member (Center for Emerging and Reemerging Pathogens) Member (Graduate Program in Medicinal Chemistry) Courses taught: The Chemical Biology of Pathogens GSBS 5160Q – Spring 2015 – 2017 Medical School Foundations II (7 lectures) – Winter 2016 – 2017 Select Agent Biology MSBS N517Q – Spring 2012 - 2013 Pharmacology PHRM 7206 – Spring 2012 - 2018 Advanced Concepts in I3 GSBS 5022Q – Spring 2012, 2013, 2015, 2016 Topics in Pharmacology PHPY-N5030 – Spring 2016 – 2017 Introduction to Genomics, Proteomics, and Bioinformatics MBGC 5002Q – Spring 2015, 2017 – 8 University Activities: Faculty Committee on Appointments and Promotions (2017–) Admissions Committee for M.D./Ph.D.
    [Show full text]
  • Multifaceted Roles of Ultra-Rare and Rare Disease Patients/Parents In
    Drug Discovery Today Volume 18, Numbers 21/22 November 2013 PERSPECTIVE feature Multifaceted roles of ultra-rare and rare disease patients/parents in drug discovery 1,2 3,4 5 2,4,6,7,8,9,10 Jill Wood , Lori Sames , Allison Moore and Sean Ekins , [email protected] 1 Jonah’s Just Begun, P. O. Box 150057, Brooklyn, NY 11215, USA 2 Phoenix Nest, P. O. Box 150057, Brooklyn, NY 11215, USA 3 Hannah’s Hope Fund, P. O. Box 130, Rexford, NY 12148, USA 4 BioGAN Therapeutics, P. O. Box 130, Rexford, NY 12148, USA 5 Hereditary Neuropathy Foundation, 432 Park Avenue South – 4th Floor, New York, NY 10016, USA 6 Collaborations in Chemistry, 5616 Hilltop Needmore Road, Fuquay Varina, NC 27526, USA 7 Collaborative Drug Discovery, 1633 Bayshore Highway, Suite 342, Burlingame, CA 94010, USA 8 Department of Pharmaceutical Sciences, University of Maryland, 20 Penn Street, Baltimore, MD 21201, USA 9 PERSPECTIVE Department of Pharmacology, Rutgers University-Robert Wood Johnson Medical School, 675 Hoes Lane, Piscataway, NJ 08854, USA 10 Division of Chemical Biology and Medicinal Chemistry, UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, NC 27599-7355, USA Features Individual parents and patients are increasingly doing more to fund, discover and develop treatments for rare and ultra-rare diseases that afflict their children, themselves or their friends. They are performing roles in business development that would be classed as entrepreneurial; and their organizational roles in driving the science in some cases are equivalent to those of principal investigators. These roles are in addition to their usual positioning as advocates.
    [Show full text]
  • Front Matter
    k Computational Toxicology k k k k Wiley Series on Technologies for the Pharmaceutical Industry Sean Ekins, Series Editor Computational Toxicology: Risk Assessment for Pharmaceutical and Environmental Chemicals Edited by Sean Ekins Pharmaceutical Applications of Raman Spectroscopy Edited by Slobodan Šašic´ Pathway Analysis for Drug Discovery: Computational Infrastructure and Applications Edited by Anton Yuryev Drug Efficacy, Safety, and Biologics Discovery: Enmerging Technologies and Tools Edited by Sean Ekins and Jinghai J. Xu The Engines of Hippocrates: From the Dawn of Medicine to Medical and Pharmaceutical Informatics Barry Robson and O.K. Baek Pharmaceutical Data Mining: Applications for Drug Discovery Edited by Konstantin V. Balakin The Agile Approach to Adaptive research: Optimizing Efficiency in Clinical Development Michael J. Rosenberg Pharmaceutical and Biomedical Project Management in a Changing Global Environment, Edited by Scott D. Babler k Systems Biology in Drug Discovery and Development k Edited by Daniel L. Young and Seth Michelson Collaborative Computational Technologies for Biomedical Research Edited by Sean Ekins, Maggie A.Z. Hupcey and Antony J. William Predictive Approaches in Drug Discovery and Development: Biomarkers and In Vitro/ In Vivo correlations Edited by J. Andrew Williams, Richard Lalonde, Jeffrey Koup and David D. Christ Collaborative Innovation in Drug Discovery, Strategies for Public and Private Partnerships Edited by Rathnam Chaguturu Computational Toxicology: Risk Assessment for Chemicals Edited by Sean Ekins k k Computational Toxicology Risk Assessment for Chemicals Edited by Sean Ekins k Collaborations Pharmaceuticals, Inc. Raleigh, USA k k k This edition first published 2018 © 2018 John Wiley & Sons, Inc. All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, except as permitted by law.
    [Show full text]
  • Collaborative Drug Discovery's 10 Anniversary Community Meeting
    Collaborative Drug Discovery’s 10th Anniversary Community Meeting April 4th, 2014 8am-6pm UCSF Mission Bay Conference Center 1675 Owens St. San Francisco, CA 94158 Please use this Twitter hashtag for the event: #CDDx14 Agenda 7:45 Registration - refreshments in Foyer and Exhibition room 8:15 Opening Remarks - with UCSF Host, Stephanie Robertson and CDD CEO, Barry Bunin Collaborative Workflow: Basic and Advanced Use Cases of CDD Vault 8:20 Charlie Weatherall (CDD) & Anna Spektor (CDD) 9:10 Morning Sessions - moderated by Sylvia Ernst (CDD) The Rockefeller University Compound Screening Library 9:15 J. Fraser Glickman (Rockefeller University) Recent Progress in De-Orphanization of Nuclear Receptors 9:40 Ruo Steensma (Orphagen Pharmaceuticals) 10:05 Morning Break - located in the Foyer and Exhibition room Large small molecules in a Small large molecule world 10:35 Leanna Staben (Genentech) Linking the Molecular Structure of Medicines to their Biological Effects 11:00 Bob Volkmann (Systamedic & Mnemosyne Pharmaceuticals) Panel: Externalized Research - What Makes a Good Partnership? Wisdom from Experts 11:25 Who've "Been There - Done That," moderated by Sylvia Ernst (CDD) 11:50 Lunch - boxed lunches in the Foyer and Exhibition room Optional: “What if CDD had...” provide feedback to our product team (12:35) Kellan Gregory (CDD) 10 Years Evolving Our Collaborative Drug Discovery Vaults 1:05 Barry Bunin (CDD) CDD Vault: Noteworthy recent enhancements and a preview of things to come 1:30 David Blondeau (CDD) & Kellan Gregory (CDD) 2:20 Afternoon sessions - moderated Christopher Lipinski The Tuberculosis Drug Accelerator: A New Paradigm For Drug Discovery 2:25 Jerry Shipps (Tuberculosis Drug Accelerator) The role of NIAID in the development of therapeutics for Infectious Diseases 2:50 Martin John Rogers (NIAID) 3:15 Afternoon Break - located in the Foyer and Exhibition Room Targeting the Immunoproteasome 3:40 Dustin L.
    [Show full text]
  • A Weight of Evidence Approach for Improving the Quality in Public
    Keynote Review Towards a Gold Standard: Regarding Quality in Public Domain Chemistry Databases and Approaches to Improving the Situation Antony J. Williams1, Sean Ekins2 and Valery Tkachenko1 1 Royal Society of Chemistry, US Office, 904 Tamaras Circle, Wake Forest, NC-27587, U.S.A. 2 Collaborations in Chemistry, 5616 Hilltop Needmore Road, Fuquay-Varina, NC 27526, U.S.A. Corresponding Author: Antony Williams, 904 Tamaras Circle, Wake Forest, NC27587 Email: [email protected] Tel 919-201-1516. Short Biographies Antony J. Williams graduated with a Ph.D. in chemistry as an NMR spectroscopist. Dr Williams is currently VP, Strategic development for ChemSpider at the Royal Society of Chemistry. Dr. Williams has written chapters for many books and authored or >120 peer reviewed papers and book chapters on NMR, predictive ADME methods, internet-based tools, crowdsourcing and database curation. He is an active blogger and participant in the internet chemistry network. Sean Ekins graduated from the University of Aberdeen; receiving his M.Sc., Ph.D. and D.Sc. He is Principal Consultant for Collaborations in Chemistry and Collaborations Director at Collaborative Drug Discovery Inc. He has written over 170 papers and book chapters on topics including drug-drug interaction screening, computational ADME/Tox, collaborative computational technologies and neglected disease research. He has edited or co-edited 4 books. Valery Tkachenko has graduated from the Lomonosov Moscow State University, receiving his M.Sc. in Chemistry and B.Sc. in Computer Sciences. He is currently Chief Technology Officer of ChemSpider at the Royal Society of Chemistry. Over the course of the last 15 years he has participated in development of a number of successful enterprise projects for large pharma and public domain.
    [Show full text]
  • Tilorone: a Broad-Spectrum Antiviral Invented in the USA and Commercialized in Russia and Beyond
    Pharm Res (2020) 37:71 https://doi.org/10.1007/s11095-020-02799-8 PERSPECTIVE Tilorone: a Broad-Spectrum Antiviral Invented in the USA and Commercialized in Russia and beyond Sean Ekins1 & Thomas R. Lane1 & Peter B. Madrid 2 Received: 14 February 2020 /Accepted: 10 March 2020 # Springer Science+Business Media, LLC, part of Springer Nature 2020 ABSTRACT For the last 50 years we have known of a HIV Human immunodeficiency virus broad-spectrum agent tilorone dihydrochloride (Tilorone). ICH International Council for Harmonization of This is a small-molecule orally bioavailable drug that was Technical Requirements for Pharmaceuticals for originally discovered in the USA and is currently used clini- Human Use cally as an antiviral in Russia and the Ukraine. Over the years IFN Interferon there have been numerous clinical and non-clinical reports of MARV Marburg virus its broad spectrum of antiviral activity. More recently we have MERS Middle East Respiratory Syndrome identified additional promising antiviral activities against RIG-I Retinoic acid-inducible gene I Middle East Respiratory Syndrome, Chikungunya, Ebola SARS Severe Acute Respiratory Syndrome and Marburg which highlights that this old drug may have VEEV Venezuelan Equine Encephalitis Virus; other uses against new viruses. This may in turn inform the types of drugs that we need for virus outbreaks such as for the new coronavirus severe acute respiratory syndrome coronavi- INTRODUCTION rus 2 (SARS-CoV-2). Tilorone has been long neglected by the west in many respects but it deserves further reassessment in In the last 5 years there have been 2 major Ebola virus out- light of current and future needs for broad-spectrum breaks in Africa (1), the Zika virus in Brazil (2) and currently antivirals.
    [Show full text]
  • CDD 2008 Community Post-Meeting
    Collaborative Drug Discovery Collaborative Drug Discovery Community Users Meeting Tuesday, October 7th, 2008 The J. David Gladstone Institutes Robert W. Mahley Auditorium UCSF Mission Bay Campus, San Francisco, CA 1 Acknowledgements Douglas Crawford, Ph.D., QB3 Millo Pasquini, QB3 Bruce Conklin, M.D., The J. David Gladstone Institutes Catharine Evans, The J. David Gladstone Institutes Where available, speaker presentations and audio recordings are available via links in this document and the meeting web page at Collaborative Drug Discovery Community Users Meeting 2008 . 2 2nd Annual QB3-CDD Community Meeting Schedule 8AM - Register Opens: Socialize over bagels and coffee 8:30-9:30AM - CDD System Training lead by Kellan Gregory Audio 9:30-10:00 - Symposium Registration: Meet participants over coffee 10:00AM - Symposium Welcome: Barry Bunin (CDD) Audio | Slides 10:05-10:30 - Repurposing approved clinical drugs for protozoan diseases David Sullivan, MD, Johns Hopkins Bloomberg School of Public Health 10:30-10:55 - Data Management in an Academic Drug Discovery Program Fred Buckner MD, University of Washington, Department of Medicine 10:55-11:20 - A ‘Broad’ View of Translational Research at the Stanley Center Janice Kranz, PhD, Stanley Center for Psychiatric Research, Broad Institute of MIT 11:20-11:40 - Short Break with Poster Viewing in Lobby and Rooms A & B 11:40-12:05 - Novel drugs for schistosomiasis: establishment of a medium-throughput whole-organism screen at UCSF Conor Caffrey, PhD, Sandler Center, University of California San Francisco
    [Show full text]
  • Dmd # 35113 1 a Predictive Ligand-Based Bayesian
    Downloaded from dmd.aspetjournals.org at ASPET Journals on September 23, 2021 1 and Jinghai J. Xu Xu J. Jinghai and INDUCED LIVER INJURY Sean Ekins, Antony J. Williams DMD Fast Forward. Published on September 15, 2010 as DOI: 10.1124/dmd.110.035113 DMD Fast Forward. Published on September 15, 2010 as DOI: 10.1124/dmd.110.035113 DMD Fast Forward. Published on September 15, 2010 as DOI: 10.1124/dmd.110.035113 DMD Fast Forward. Published on September 15, 2010 as DOI: 10.1124/dmd.110.035113 DMD Fast Forward. Published on September 15, 2010 as DOI: 10.1124/dmd.110.035113 DMD Fast Forward. Published on September 15, 2010 as DOI: 10.1124/dmd.110.035113 DMD Fast Forward. Published on September 15, 2010 as DOI: 10.1124/dmd.110.035113 DMD Fast Forward. Published on September 15, 2010 as DOI: 10.1124/dmd.110.035113 DMD Fast Forward. Published on September 15, 2010 as DOI: 10.1124/dmd.110.035113 DMD Fast Forward. Published on September 15, 2010 as DOI: 10.1124/dmd.110.035113 DMD Fast Forward. Published on September 15, 2010 as DOI: 10.1124/dmd.110.035113 DMD Fast Forward. Published on September 15, 2010 as DOI: 10.1124/dmd.110.035113 DMD Fast Forward. Published on September 15, 2010 as DOI: 10.1124/dmd.110.035113 DMD Fast Forward. Published on September 15, 2010 as DOI: 10.1124/dmd.110.035113 DMD Fast Forward. Published on September 15, 2010 as DOI: 10.1124/dmd.110.035113 DMD Fast Forward. Published on September 15, 2010 as DOI: 10.1124/dmd.110.035113 DMD Fast Forward.
    [Show full text]
  • How Artificial Intelligence Can Change the Pharmaceutical Landscape
    IBSA FOUNDATION PAPERS 16 How Artifi cial Intelligence can change the pharmaceutical landscape XVI Forum October 9th 2019, Lugano Program & Abstract Chairman Andrea Danani Istituto Dalle Molle di studi sull’Intelligenza Artificiale (IDSIA), Lugano, Switzerland; Università della Svizzera italiana (USI), Lugano, Switzerland; Scuola universitaria professionale della Svizzera italiana (SUPSI), Lugano, Switzerland Speakers Alessandro Curioni IBM Research lab, Zurich, Switzerland; Swiss Academy of Engineering Sciences, Zurich, Switzerland Gianni De Fabritiis ICREA, Barcelona, Spain; Universitat Pompeu Fabra, Barcelona, Spain; Acellera, Barcelona, Spain Sean Ekins Collaborations Pharmaceuticals, Inc., Raleigh, United States of America; UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, United States of America Ed J. Griffen MedChemica Ltd., Biohub, Alderley Park, Macclesfield, Cheshire, United Kingdom Jürgen Schmidhuber NNAISENSE, Lugano, Switzerland; Swiss AI Lab Istituto Dalle Molle di studi sull’Intelligenza Artificiale (IDSIA), Manno, Switzerland; Università della Svizzera italiana (USI), Lugano, Switzerland; Scuola universitaria professionale della Svizzera italiana (SUPSI), Lugano, Switzerland Alex Zhavoronkov Insilico Medicine, Hong Kong; Buck Institute for Research on Aging, Novato, United States of America; Biogerontology Research Foundation, London, United Kingdom Scientific Committee Andrea Danani Istituto Dalle Molle di studi sull’Intelligenza Artificiale (IDSIA), Lugano, Switzerland; Università
    [Show full text]
  • Systems-ADME/Tox: Resources and Network Approaches
    Journal of Pharmacological and Toxicological Methods 53 (2006) 38 – 66 www.elsevier.com/locate/jpharmtox Appraisal of state-of-the art Systems-ADME/Tox: Resources and network approaches Sean Ekins * GeneGo, 500 Renaissance Drive, Suite 106, St. Joseph, MI 49085, USA School of Pharmacy Department of Pharmaceutical Sciences, University of Maryland, USA Received 23 May 2005; accepted 23 May 2005 Abstract The increasing cost of drug development is partially due to our failure to identify undesirable compounds at an early enough stage of development. The application of higher throughput screening methods have resulted in the generation of very large datasets from cells in vitro or from in vivo experiments following the treatment with drugs or known toxins. In recent years the development of systems biology, databases and pathway software has enabled the analysis of the high-throughput data in the context of the whole cell. One of the latest technology paradigms to be applied alongside the existing in vitro and computational models for absorption, distribution, metabolism, excretion and toxicology (ADME/Tox) involves the integration of complex multidimensional datasets, termed toxicogenomics. The goal is to provide a more complete understanding of the effects a molecule might have on the entire biological system. However, due to the sheer complexity of this data it may be necessary to apply one or more different types of computational approaches that have as yet not been fully utilized in this field. The present review describes the data generated currently and introduces computational approaches as a component of ADME/Tox. These methods include network algorithms and manually curated databases of interactions that have been separately classified under systems biology methods.
    [Show full text]
  • Transparency in Decision Modelling: What, Why, Who, and How?
    Transparency in decision modelling: what, why, who, and how? Christopher James Sampson1 [ORCID: 0000-0001-9470-2369], The Office of Health Economics, 7th Floor, Southside, 105 Victoria Street, London, SW1E 6QT, United Kingdom Renée Arnold [ORCID: 0000-0001-5935-3220], Arnold Consultancy & Technology, LLC, 15 West 72nd Street - 23rd Floor, New York, NY 10023-3458, United States Stirling Bryan [ORCID: 0000-0001-7093-3058], University of British Columbia, 701-828 West 10th Avenue, Research Pavilion, Vancouver, BC V5Z 1M9, Canada Philip Clarke [ORCID: 0000-0002-7555-5348], University of Oxford, Richard Doll Building, Old Road Campus, Oxford OX3 7LF, United Kingdom Sean Ekins [ORCID: 0000-0002-5691-5790], Collaborations Pharmaceuticals Inc., 840 Main Campus Drive, Lab 3510, Raleigh, NC 27606, United States Anthony Hatswell [ORCID: https://orcid.org/0000-0003-1129-326X], Delta Hat, 212 Tamworth Road, Nottingham, NG10 3GS, United Kingdom Neil Hawkins [ORCID: 0000-0003-3199-221X], University of Glasgow, 1 Lilybank Gardens, Glasgow G12 8RZ, United Kingdom Sue Langham [ORCID: 0000-0003-2088-3333], Maverex Limited, 5 Brooklands Place, Brooklands Road, Sale, Cheshire, M33 3SD, United Kingdom Deborah Marshall [ORCID: 0000-0002-8467-8008], University of Calgary, 3280 Hospital Drive NW, Calgary, Alberta T2N 4Z6, Canada Mohsen Sadatsafavi [ORCID: 0000-0002-0419-7862], University of British Columbia, 2405 Wesbrook Mall, Vancouver, BC, V6T1Z3, Canada Will Sullivan [ORCID: 0000-0001-5221-7074], BresMed Health Solutions, Steel City House, West Street, Sheffield, S1 2GQ, United Kingdom Edward C F Wilson [ORCID: 0000-0002-8369-1577], Health Economics Group, Norwich Medical School, University of East Anglia, Norwich, NR4 7TJ, United Kingdom Tim Wrightson, Adis Publications, 5 The Warehouse Way, Northcote 0627, Auckland, New Zealand 1 Corresponding author.
    [Show full text]
  • Incorporating Green Chemistry Concepts Into Mobile Chemistry Applications and Their
    Incorporating Green Chemistry Concepts into Mobile Chemistry Applications and Their Potential Uses Sean Ekins*1‡, Alex M. Clark2‡ and Antony J. Williams3‡ 1 Collaborations in Chemistry, 5616 Hilltop Needmore Road, Fuquay-Varina, NC 27526, U.S.A. 2 Molecular Materials Informatics, 1900 St. Jacques #302, Montreal, Quebec, Canada H3J 2S1. 3 Royal Society of Chemistry, 904 Tamaras Circle, Wake Forest, NC 27587, U.S.A. *Corresponding author: E-mail: [email protected] KEYWORDS Drug Discovery, Green Chemistry, Mobile Applications, Open Drug Discovery Teams 1 Green Chemistry related information is generally proprietary and papers on the topic are commonly behind pay walls which limits their accessibility. Several new mobile applications (Apps) have been recently released for the Apple iOS platform, which incorporate green chemistry concepts. Due to the large number of people who now own a mobile device across all demographics, this population represents a highly novel way to communicate green chemistry, which has not previously been appreciated. We have made the American Chemical Society Green Chemistry Institute® (ACS GCI) Pharmaceutical Roundtable Solvent Selection Guide more accessible, and increased its visibility by creating a free mobile app for the Apple iOS platform called Green Solvents. We have also used this content for molecular similarity calculations using additional solvents to predict potential environmental and health categories, which could help in solvent selection. This approach predicted the correct waste or health class for over 60% of solvents when the Tanimoto similarity was > 0.5. Additional mobile apps that incorporate green chemistry content or concepts are also described including Open Drug Discovery Teams and Yield101.
    [Show full text]