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LIS 7.1 Users' Guide

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LIS 7.1 Users' Guide Land Information System LIS 7.1 Users' Guide August 4, 2016 Revision 1.5 History: Revision Summary of Changes Date 1.5 Updates for LIS 7.1rp7 Public Release August 4, 2016 National Aeronautics and Space Administration Goddard Space Flight Center Greenbelt, Maryland 20771 1 History: Revision Summary of Changes Date 1.4 LIS 7.1 AFWA FY15 Deliverable July 28, 2016 1.3 LIS 7.1rp1 Public Release December 15, 2015 1.2 Note unavailability of MERRA2 forcing data May 29, 2015 1.1 LIS 7.1 Public Release May 27, 2015 1.0 LIS 7.1 Initial AFWA Release April 13, 2015 2 Contents 1 Introduction 11 1.1 What's New . 11 1.1.1 LIS 7.1 . 11 1.1.2 LIS 7.0 . 12 1.1.3 LIS 6.2 . 13 1.1.4 LIS 6.1 . 14 1.1.5 LIS 6.0 . 14 1.1.6 LIS 5.0 . 15 1.1.7 LIS 4.2 . 15 1.1.8 LIS 4.1 . 16 1.1.9 LIS 4.0.2 . 16 1.1.10 LIS 4.0 . 16 1.1.11 LIS 3.1 . 16 1.1.12 LIS 3.0 . 17 2 Background 18 2.1 LIS . 18 2.2 LIS core . 19 3 Preliminary Information 21 4 Obtaining the Source Code 22 4.1 Important Note Regarding File Systems . 22 3 4.2 Public Release Source Code Tar File . 22 4.3 Checking Out the Source Code . 23 4.4 Source files . 23 5 Building the Executable 33 5.1 Development Tools . 33 5.2 Required Software Libraries . 33 5.3 Optional Software Libraries . 35 5.4 Build Instructions . 38 5.5 Generating documentation . 41 6 Running the Executable 42 6.1 Command line arguments . 43 7 Test-cases 44 7.1 Public tests . 44 7.1.1 The testcases Sub-directory . 44 7.1.2 Input and output data . 45 7.2 Internal tests . 45 7.2.1 The testcases Sub-directory . 45 7.2.2 Test-cases LDT . 46 7.2.3 Test-cases Input . 46 7.2.4 Test-cases Output . 46 7.2.5 Output Example . 47 4 8 Output Data Processing 49 8.1 Fortran binary output format . 50 8.2 GRIB1 output format . 50 8.3 NetCDF output format . 50 9 LIS config File 51 9.1 Overall driver options . 51 9.2 Runtime options . 56 9.3 Data assimilation . 63 9.3.1 AMSR-E (NASA) soil moisture assimilation . 71 9.3.2 AMSR-E (LPRM) soil moisture assimilation . 72 9.3.3 ECV soil moisture assimilation . 72 9.3.4 WindSat soil moisture assimilation . 73 9.3.5 ANSA Snow Covered Fraction (SCF) Assimilation . 74 9.3.6 MODIS snow cover fraction assimilation . 76 9.3.7 PMW snow depth or SWE assimilation . 76 9.3.8 GRACE TWS Assimilation . 80 9.3.9 SMOPS soil moisture assimilation . 81 9.4 Radiative Transfer/Forward Models . 82 9.4.1 CRTM2EM . 82 9.4.2 CMEM3 . 84 9.5 Optimization and Uncertainty Estimation . 85 9.5.1 Least squares . 87 9.5.2 Probability . 87 5 9.5.3 Likelihood . 87 9.5.4 Genetic Algorithm . 87 9.5.5 Differential Evolution Markov Chain (DEMCz) algorithm 89 9.5.6 Monte Carlo simulation . 90 9.5.7 Observations for Parameter Estimation . 90 9.5.8 AMSRE SR Emissivity . 90 9.5.9 AMSR-E (LPRM) pe soil moisture . 91 9.5.10 No obs . 91 9.6 Parameters . 91 9.6.1 Parameter options . 92 9.6.2 TBOT lag . 96 9.6.3 MODIS real-time LAI . 97 9.6.4 NESDIS weekly greenness fraction . 97 9.6.5 SPORT greenness fraction . 97 9.6.6 VIIRS greenness fraction . 98 9.7 Forcings . 99 9.7.1 GDAS . 99 9.7.2 GEOS . 99 9.7.3 ECMWF . 100 9.7.4 ECMWF Reanalysis . 100 9.7.5 PRINCETON . 100 9.7.6 Rhone AGG . 100 9.7.7 GSWP2 . 101 6 9.7.8 GMAO GLDAS . 102 9.7.9 GFS . 102 9.7.10 MERRA-Land . 103 9.7.11 MERRA2 . 103 9.7.12 GSWP1 . 104 9.8 Supplemental forcings . 104 9.8.1 AGRMET radiation (latlon) . 104 9.8.2 AGRMET radiation (polar stereographic) . 105 9.8.3 CMAP precipitation . 105 9.8.4 CEOP station data . 105 9.8.5 SCAN station data . 105 9.8.6 NLDAS1 . 106 9.8.7 NLDAS2 . 107 9.8.8 TRMM 3B42RT precipitation . 108 9.8.9 TRMM 3B42V6 precipitation . 109 9.8.10 TRMM 3B42V7 precipitation . 109 9.8.11 CMORPH precipitation . 109 9.8.12 Stage II precipitation . 110 9.8.13 Stage IV precipitation . 110 9.8.14 NARR . 110 9.8.15 RFE2Daily . 111 9.8.16 PET USGS . 111 9.8.17 RFE2 data bias corrected to GDAS . 111 7 9.8.18 NAM242 . 112 9.8.19 WRFout . 112 9.8.20 GEOS5 Forecast . 112 9.8.21 GDAS for LSWG . 112 9.8.22 Bondville . 113 9.8.23 SNOTEL . 113 9.8.24 COOP . 114 9.8.25 VIC processed forcing . 114 9.8.26 PALS station . 115 9.8.27 PILDAS . 116 9.8.28 RDHM356 . 116 9.9 Land surface models . 118 9.9.1 Forcing only { Template . 118 9.9.2 NCEP's Noah-2.7.1 . 118 9.9.3 NCAR's Noah-3.2 . 121 9.9.4 NCAR's Noah-3.3 . 124 9.9.5 NCAR's Noah-3.6 . 128 9.9.6 NoahMP 3.6 . 131 9.9.7 CLM 2.0 . 138 9.9.8 VIC 4.1.1 . 139 9.9.9 VIC 4.1.2 . 140 9.9.10 Mosaic . 142 9.9.11 HySSiB . 144 8 9.9.12 Catchment Fortuna-2 5 ................... 145 9.9.13 GeoWRSI 2.0 . 146 9.9.14 RDHM 3.5.6 . 147 9.10 Irrigation . ..
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