Infertile Interspecific Hybrids Between Transgenically Mitigated Nicotiana
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Characterisation of an Intron-Split Solanales Microrna
Characterisation of an intron-split Solanales microRNA Zahara Medina Calzada A thesis submitted for the degree of Doctor of Philosophy University of East Anglia School of Biological Sciences September 2017 This copy of the thesis has been supplied on condition that anyone who consults it is understood to recognise that its copyright rests with the author and that use of any information derived there from must be in accordance with current UK Copyright Law. In addition, any quotation or extract must include full attribution “Doing science is very romantic… when it works!” (the friend of a friend of mine) 2 Abstract MicroRNAs (miRNAs) are a distinct class of short endogenous RNAs with central roles in post-transcriptional regulation of gene expression that make them essential for the development and normal physiology of several groups of eukaryotes, including plants. In the last 15 years, hundreds of miRNA species have been identified in plants and great advances have been achieved in the understanding of plant miRNA biogenesis and mode of action. However, many miRNAs, generally those with less conventional features, still remain to be discovered. Likewise, further layers that regulate the pathway from miRNA biogenesis to function and turnover are starting to be revealed. In the present work we have studied the tomato miRNA “top14”, a miRNA with a non-canonical pri-miRNA structure in which an intron is in between miRNA and miRNA*. We have found that this miRNA is conserved within the economically important Solanaceae family and among other members of the Solanales order also agriculturally relevant, like in sweet potato, while its peculiar intron-split pri-miRNA structure is exclusively kept in the more closely related genera Solanum , Capsicum and Nicotiana . -
Genome Skimming for Phylogenomics
Genome skimming for phylogenomics Steven Andrew Dodsworth School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK. Submitted in partial fulfilment of the requirements of the degree of Doctor of Philosophy November 2015 1 Statement of originality I, Steven Andrew Dodsworth, confirm that the research included within this thesis is my own work or that where it has been carried out in collaboration with, or supported by others, that this is duly acknowledged and my contribution indicated. Previously published material is also acknowledged and a full list of publications is given in the Appendix. Details of collaboration and publications are given at the start of each chapter, as appropriate. I attest that I have exercised reasonable care to ensure that the work is original, and does not to the best of my knowledge break any UK law, infringe any third party’s copyright or other Intellectual Property Right, or contain any confidential material. I accept that the College has the right to use plagiarism detection software to check the electronic version of the thesis. I confirm that this thesis has not been previously submitted for the award of a degree by this or any other university. The copyright of this thesis rests with the author and no quotation from it or information derived from it may be published without the prior written consent of the author. Signature: Date: 16th November 2015 2 Frontispiece: Nicotiana burbidgeae Symon at Dalhousie Springs, South Australia. 2014. Photo: S. Dodsworth. 3 Acknowledgements Firstly, I would like to thank my PhD supervisors, Professor Andrew Leitch and Professor Mark Chase. -
Plant Molecular Farming: a Viable Platform for Recombinant Biopharmaceutical Production
plants Review Plant Molecular Farming: A Viable Platform for Recombinant Biopharmaceutical Production Balamurugan Shanmugaraj 1,2, Christine Joy I. Bulaon 2 and Waranyoo Phoolcharoen 1,2,* 1 Research Unit for Plant-Produced Pharmaceuticals, Chulalongkorn University, Bangkok 10330, Thailand; [email protected] 2 Department of Pharmacognosy and Pharmaceutical Botany, Faculty of Pharmaceutical Sciences Chulalongkorn University, Bangkok 10330, Thailand; [email protected] * Correspondence: [email protected]; Tel.: +66-2-218-8359; Fax: +66-2-218-8357 Received: 1 May 2020; Accepted: 30 June 2020; Published: 4 July 2020 Abstract: The demand for recombinant proteins in terms of quality, quantity, and diversity is increasing steadily, which is attracting global attention for the development of new recombinant protein production technologies and the engineering of conventional established expression systems based on bacteria or mammalian cell cultures. Since the advancements of plant genetic engineering in the 1980s, plants have been used for the production of economically valuable, biologically active non-native proteins or biopharmaceuticals, the concept termed as plant molecular farming (PMF). PMF is considered as a cost-effective technology that has grown and advanced tremendously over the past two decades. The development and improvement of the transient expression system has significantly reduced the protein production timeline and greatly improved the protein yield in plants. The major factors that drive the plant-based platform towards potential competitors for the conventional expression system are cost-effectiveness, scalability, flexibility, versatility, and robustness of the system. Many biopharmaceuticals including recombinant vaccine antigens, monoclonal antibodies, and other commercially viable proteins are produced in plants, some of which are in the pre-clinical and clinical pipeline. -
Appendix Color Plates of Solanales Species
Appendix Color Plates of Solanales Species The first half of the color plates (Plates 1–8) shows a selection of phytochemically prominent solanaceous species, the second half (Plates 9–16) a selection of convol- vulaceous counterparts. The scientific name of the species in bold (for authorities see text and tables) may be followed (in brackets) by a frequently used though invalid synonym and/or a common name if existent. The next information refers to the habitus, origin/natural distribution, and – if applicable – cultivation. If more than one photograph is shown for a certain species there will be explanations for each of them. Finally, section numbers of the phytochemical Chapters 3–8 are given, where the respective species are discussed. The individually combined occurrence of sec- ondary metabolites from different structural classes characterizes every species. However, it has to be remembered that a small number of citations does not neces- sarily indicate a poorer secondary metabolism in a respective species compared with others; this may just be due to less studies being carried out. Solanaceae Plate 1a Anthocercis littorea (yellow tailflower): erect or rarely sprawling shrub (to 3 m); W- and SW-Australia; Sects. 3.1 / 3.4 Plate 1b, c Atropa belladonna (deadly nightshade): erect herbaceous perennial plant (to 1.5 m); Europe to central Asia (naturalized: N-USA; cultivated as a medicinal plant); b fruiting twig; c flowers, unripe (green) and ripe (black) berries; Sects. 3.1 / 3.3.2 / 3.4 / 3.5 / 6.5.2 / 7.5.1 / 7.7.2 / 7.7.4.3 Plate 1d Brugmansia versicolor (angel’s trumpet): shrub or small tree (to 5 m); tropical parts of Ecuador west of the Andes (cultivated as an ornamental in tropical and subtropical regions); Sect. -
Relatório Anual Bolsa CAPES
0 NATALIE DO VALLE CAPELLI ULTRASTRUCTURE AND CHEMICAL ANALYSIS OF OSMOPHORES IN APOCYNACEAE SÃO PAULO 2017 0 NATALIE DO VALLE CAPELLI ULTRASTRUCTURE AND CHEMICAL ANALYSIS OF OSMOPHORES IN APOCYNACEAE ULTRAESTRUTURA E ANÁLISE QUÍMICA DE OSMÓFOROS EM APOCYNACEAE Dissertação apresentada ao Instituto de Biociências da Universidade de São Paulo, para a obtenção do título de Mestre em Ciências, na área de Botânica. Orientação: Prof. Dr. Diego Demarco São Paulo 2017 1 Abstract Apocynaceae presents the flowers with the highest degree of synorganization among the eudicots and highly elaborated pollination mechanisms associated with the high diversity of glands. The osmophore stands out as responsible to produce a floral scent which attracts pollinators and, despite its fundamental relevance for pollination, its structure and mechanism of production and release of the perfume is essentially unknown in Apocynaceae. This present work aims to characterize morphologically and ultrastructurally the osmophores of Apocynaceae, besides chemically identifying the compounds that constitute the floral scent. Species from two subfamilies were selected to describe the diversity of osmophores and types of scent in the family. The osmophores were firstly located histochemically and, later, this region was processed for transmission electron microscopy. Micromorphological analysis was performed by scanning electron microscopy, and the identification of volatile oils made by GC-MS. Osmophores are located on the adaxial surface of the free portion of the petals. They varied in the shape of epidermal cells, striation of the cuticle and presence of trichomes. This gland is mostly formed by secretory epidermis and parenchyma, except in Plumeria, where the osmophores are exclusively epidermal. The secretory cells presented thick walls in the Asclepiadoideae and secretion produced by plastids and SER in all species. -
Chemical Constituents in Leaves and Aroma Products of Nicotiana Rustica L
International Journal of Food Studies IJFS April 2020 Volume 9 pages 146{159 Chemical Constituents in Leaves and Aroma Products of Nicotiana rustica L. Tobacco Venelina T. Popovaa*, Tanya A. Ivanovaa, Albena S. Stoyanovaa, Violeta V. Nikolovab, Margarita H. Dochevab, Tzveta H. Hristevab, Stanka T. Damyanovac, and Nikolay P. Nikolovb a Department of Tobacco, Sugar, Vegetable and Essential Oils, University of Food Technologies, 26 Maritza blvd., 4002 Plovdiv, Bulgaria b Tobacco and Tobacco Products Institute, 4108 Markovo, Bulgaria c Angel Kanchev University of Russe, Razgrad Branch, 3 Aprilsko vastanie blvd., 7200 Razgrad, Bulgaria *Corresponding author [email protected] Tel: +359-32-603-666 Fax: +359-32-644-102 Received: 4 May 2018; Published online: 18 April 2020 Abstract Nicotiana rustica L. (Aztec tobacco) is the only Nicotiana species, except common tobacco (N. tabacum L.), which is cultivated for tobacco products. The leaves of N. rustica, however, accumulate various specialized metabolites of potential interest. Therefore, the objective of this study was to evalu- ate certain classes of metabolites (by HPLC and GC-MS) in the leaves, the essential oil (EO), concrete and resinoid of N. rustica. Three pentacyclic triterpenes were identified in the leaves (by HPLC): betulin (252.78 µg g−1), betulinic (182.53 µg g−1) and oleanolic (69.44 µg g−1) acids. The dominant free phen- olic acids in the leaves (by HPLC) were rosmarinic (4257.38 µg g−1) and chlorogenic (1714.40 µg g−1), and conjugated forms of vanillic (3445.71 µg g−1), sinapic (1963.11 µg g−1) and syringic (1784.96 µg g−1). -
Best Practices User Guides-Health Equity in Tobacco Prevention and Control
User Guides Health Equity in Tobacco Prevention and Control Acknowledgements This guide was produced by the Center for Public Health Systems Science (CPHSS) at the Brown School at Washington University in St. Louis. Primary contributors: Laura Brossart, Sarah Moreland-Russell, Stephanie Andersen, Anne Shea, Heidi Walsh, Sarah Schell, Laura Bach, Jennifer Cameron, Anneke Mohr, Laura Edison, Megan Multack, Susan Vorkoper Valued input was provided by: Stephen Babb, Diane Beistle, Rebecca Bunnell, Gloria Bryan, Kevin Collins, Shanna Cox, Monica Eischen, John Francis, Bridgette Garrett, Carissa Holmes, Brian King, Brick Lancaster, Rod Lew, Tim McAfee, Jane Mitchko, Jeannette Noltenius, Janet Porter, Gabbi Promoff, Coletta Reid, Brenda Richards, William Robinson, Robert Rodes, Anna Schecter, Scout, Karla Sneegas, Anne Sowell Valued input for the case studies was provided by: Bob Gordon, California LGBT Tobacco Education Partnership Janae Duncan, Utah Tobacco Prevention and Control Program Other contributions: Photograph on page 12 from the collection of Stanford University (tobacco.stanford.edu) Photograph on page 14 courtesy of Jóvenes de Salud Photograph on page 15 courtesy of Counter Tobacco Photograph on page 22 courtesy of Oklahoma State Department of Health Photograph on page 32 courtesy of the Jefferson County Department of Health and the Health Action Partnership Photograph on page 34 courtesy of the LGBT Tobacco Education Partnership, California Table of Contents Guide to the Reader ......................................................................... -
Study on Analytical Characteristics of Nicotiana Tabacum L., Cv. Solaris
www.nature.com/scientificreports OPEN Study on analytical characteristics of Nicotiana tabacum L., cv. Solaris biomass for potential uses in nutrition and biomethane production Antonella Fatica 1*, Francesco Di Lucia2, Stefano Marino1, Arturo Alvino1, Massimo Zuin3, Hayo De Feijter2, Boudewijn Brandt2, Sergio Tommasini2, Francesco Fantuz4 & Elisabetta Salimei 1 In order to limit the smoking tobacco sector crisis, a new non-GMO Nicotiana tabacum L. cv. Solaris was proposed as oil seed crop. Residues of oil extraction were successfully used in swine nutrition. The aim of this study was to explore the full potential of this innovative tobacco cultivar as multitasking feedstock non interfering with the food chain. In the triennium 2016–2018, samples from whole plant, inforescence and stem-leaf biomass were collected in three experimental sites and analysed for chemical constituents, including fbre fractions, sugars and starch, macro-minerals and total alkaloids. The KOH soluble protein content and the amino-acid profle were also investigated as well as the biochemical methane potential. All the analyses were performed according to ofcial methods and results were compared with values reported in literature for conventional lignocellulosic crops and agro-industry residues. The average protein content, ranging from 16.01 to 18.98 g 100 g−1 dry matter respectively for stem-leaf and whole plant samples, and their amino-acid profle are consistent with values reported for standard grass plant. These fndings suggest the potential use of cv. Solaris in industrial food formulations. Moreover, considering the average content of both fbre available for fermentations (72.6% of Neutral Detergent Fibre) and oils and fats (7.92 g 100 g−1 dry matter), the whole plant biomass of cv. -
Arab Journal of Plant Protection
Under the Patronage of H.E. the President of the Council of Ministers, Lebanon Arab Journal of Plant Protection Volume 27, Special Issue (Supplement), October 2009 Abstracts Book 10th Arab Congress of Plant Protection Organized by Arab Society for Plant Protection in Collaboration with National Council for Scientific Research Crowne Plaza Hotel, Beirut, Lebanon 26-30 October, 2009 Edited by Safaa Kumari, Bassam Bayaa, Khaled Makkouk, Ahmed El-Ahmed, Ahmed El-Heneidy, Majd Jamal, Ibrahim Jboory, Walid Abou-Gharbieh, Barakat Abu Irmaileh, Elia Choueiri, Linda Kfoury, Mustafa Haidar, Ahmed Dawabah, Adwan Shehab, Youssef Abu-Jawdeh Organizing Committee of the 10th Arab Congress of Plant Protection Mouin Hamze Chairman National Council for Scientific Research, Beirut, Lebanon Khaled Makkouk Secretary National Council for Scientific Research, Beirut, Lebanon Youssef Abu-Jawdeh Member Faculty of Agricultural and Food Sciences, American University of Beirut, Beirut, Lebanon Leila Geagea Member Faculty of Agricultural Sciences, Holy Spirit University- Kaslik, Lebanon Mustafa Haidar Member Faculty of Agricultural and Food Sciences, American University of Beirut, Beirut, Lebanon Walid Saad Member Pollex sal, Beirut, Lebanon Samir El-Shami Member Ministry of Agriculture, Beirut, Lebanon Elia Choueiri Member Lebanese Agricultural Research Institute, Tal Amara, Zahle, Lebanon Linda Kfoury Member Faculty of Agriculture, Lebanese University, Beirut, Lebanon Khalil Melki Member Unifert, Beirut, Lebanon Imad Nahal Member Ministry of Agriculture, Beirut, -
Detecting Tobamoviruses Using LED
ENZA ZADEN CLICK TO START Detecting Tobamoviruses using LED Jeroen Reintke – Enza Zaden Seed Operations B.V. Friday, 17 May 2019 ENZA ZADEN Detecting Tobamoviruses using LED ENZA ZADEN Outline • Introduction / Background • Technical • Before and After ENZA ZADEN Introduction / Background Seed Health method development Goal: To develop seed health protocols Align with vision: more, quicker, better Focus on molecular methods and standardization of detection methods Higher throughput • Pre-screen molecular assay • Automation of detection Better standardization over assays for improved reliability • Automation of detection • Standardized spikes and controls Validation for NAL accreditation for phytosanitary purposes Troubleshooting Routine Seed health ENZA ZADEN Tobamoviruses Tobamo virus, family of Virgaviridae Single positive stranded genomic RNA 6.3-6.6Kb genome size Figure 1.Tobamovirus. (Left) Model of particle 37 species in Tobamovirus group of tobacco mosaic virus (TMV). Also shown is the RNA as it is thought to participate in the Consists of two groups assembly process. (Right) Negative contrast electron micrograph of TMV particle stained Tobamovirus group 1 - solanaceae with uranyl acetate. The bar represents 100 nm. Tobamovirus group 2 – Cucurbit viruses Virus is very stable >10 yrs in seed Thermal inactiviation point 90C for 10 min in plant sap ENZA ZADEN Tobamoviruses – epidemiology Virus spreads: Mechanically Tobacco/cigarettes Tabasco/Sambal Fresh fruits Water Irrigation water Pollen Bees Seeds Co-infections with other viruses make symptoms worse and plants more susceptible Up to 30% yield loss ENZA ZADEN Detection of Tobamoviruses Bioassay for determination of presence and infectiousness Tobamoviruses infecting Solanaceae are detected in bioassay Rub inoculate leaf and/or seed materials (12x250) Based on the ability of producing necrotic lesions on tobacco leaves Nicotiana tabacum L. -
A Molecular Phylogeny of the Solanaceae
TAXON 57 (4) • November 2008: 1159–1181 Olmstead & al. • Molecular phylogeny of Solanaceae MOLECULAR PHYLOGENETICS A molecular phylogeny of the Solanaceae Richard G. Olmstead1*, Lynn Bohs2, Hala Abdel Migid1,3, Eugenio Santiago-Valentin1,4, Vicente F. Garcia1,5 & Sarah M. Collier1,6 1 Department of Biology, University of Washington, Seattle, Washington 98195, U.S.A. *olmstead@ u.washington.edu (author for correspondence) 2 Department of Biology, University of Utah, Salt Lake City, Utah 84112, U.S.A. 3 Present address: Botany Department, Faculty of Science, Mansoura University, Mansoura, Egypt 4 Present address: Jardin Botanico de Puerto Rico, Universidad de Puerto Rico, Apartado Postal 364984, San Juan 00936, Puerto Rico 5 Present address: Department of Integrative Biology, 3060 Valley Life Sciences Building, University of California, Berkeley, California 94720, U.S.A. 6 Present address: Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York 14853, U.S.A. A phylogeny of Solanaceae is presented based on the chloroplast DNA regions ndhF and trnLF. With 89 genera and 190 species included, this represents a nearly comprehensive genus-level sampling and provides a framework phylogeny for the entire family that helps integrate many previously-published phylogenetic studies within So- lanaceae. The four genera comprising the family Goetzeaceae and the monotypic families Duckeodendraceae, Nolanaceae, and Sclerophylaceae, often recognized in traditional classifications, are shown to be included in Solanaceae. The current results corroborate previous studies that identify a monophyletic subfamily Solanoideae and the more inclusive “x = 12” clade, which includes Nicotiana and the Australian tribe Anthocercideae. These results also provide greater resolution among lineages within Solanoideae, confirming Jaltomata as sister to Solanum and identifying a clade comprised primarily of tribes Capsiceae (Capsicum and Lycianthes) and Physaleae. -
PEREGRINO-THESIS-2017.Pdf (6.329Mb)
Biochemical studies in the elucidation of genes involved in tropane alkaloid production in Erythroxylum coca and Erythroxylum novogranatense by Olga P. Estrada, B. S. A Thesis In Chemical Biology Submitted to the Graduate Faculty of Texas Tech University in Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCES Approved Dr. John C. D’Auria Chair of Committee Dr. David W. Nes Co-chair of Committee Mark Sheridan Dean of the Graduate School May, 2017 Copyright 2017, Olga P. Estrada Texas Tech University, Olga P. Estrada, May 2017 AKNOWLEDGMENTS I would like to thank my mentor and advisor Dr. John C. D’Auria, for providing me with the tools to become a scientist, and offering me his unconditional support. Thanks to the members of the D’Auria lab, especially Neill Kim and Benjamin Chavez for their aid during my experimental studies. And of course, thank you to my family for always giving me the strength to pursue my goals. ii Texas Tech University, Olga P. Estrada, May 2017 TABLE OF CONTENTS AKNOWLEDGMENTS ........................................................................................................... ii ABSTRACT ........................................................................................................................... v LIST OF TABLES ................................................................................................................. vi LIST OF FIGURES ............................................................................................................... vii CHAPTER I .........................................................................................................................