Proximate, Mineral, Vitamin Compositions, Mineral Safety Index
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Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
Balanus Glandula Class: Multicrustacea, Hexanauplia, Thecostraca, Cirripedia
Phylum: Arthropoda, Crustacea Balanus glandula Class: Multicrustacea, Hexanauplia, Thecostraca, Cirripedia Order: Thoracica, Sessilia, Balanomorpha Acorn barnacle Family: Balanoidea, Balanidae, Balaninae Description (the plate overlapping plate edges) and radii Size: Up to 3 cm in diameter, but usually (the plate edge marked off from the parietes less than 1.5 cm (Ricketts and Calvin 1971; by a definite change in direction of growth Kozloff 1993). lines) (Fig. 3b) (Newman 2007). The plates Color: Shell usually white, often irregular themselves include the carina, the carinola- and color varies with state of erosion. Cirri teral plates and the compound rostrum (Fig. are black and white (see Plate 11, Kozloff 3). 1993). Opercular Valves: Valves consist of General Morphology: Members of the Cirri- two pairs of movable plates inside the wall, pedia, or barnacles, can be recognized by which close the aperture: the tergum and the their feathery thoracic limbs (called cirri) that scutum (Figs. 3a, 4, 5). are used for feeding. There are six pairs of Scuta: The scuta have pits on cirri in B. glandula (Fig. 1). Sessile barna- either side of a short adductor ridge (Fig. 5), cles are surrounded by a shell that is com- fine growth ridges, and a prominent articular posed of a flat basis attached to the sub- ridge. stratum, a wall formed by several articulated Terga: The terga are the upper, plates (six in Balanus species, Fig. 3) and smaller plate pair and each tergum has a movable opercular valves including terga short spur at its base (Fig. 4), deep crests for and scuta (Newman 2007) (Figs. -
109 Annotated Checklist Of
THE RAFFLES BULLETIN OF ZOOLOGY 2010 Supplement No. 23: 109–129 Date of Publication: 31 Oct.2010 © National University of Singapore ANNOTATED CHECKLIST OF ANOMURAN DECAPOD CRUSTACEANS OF THE WORLD (EXCLUSIVE OF THE KIWAOIDEA AND FAMILIES CHIROSTYLIDAE AND GALATHEIDAE OF THE GALATHEOIDEA) PART II – PORCELLANIDAE Masayuki Osawa Research Center for Coastal Lagoon and Environments, Shimane University, 1060 Nishikawatsu-cho, Matsue, Shimane 690-8504, Japan Email: [email protected] Patsy A. McLaughlin Shannon Point Marine Center, Western Washington University, 1900 Shannon Point Road, Anacortes, WA 98221-4042, USA Email: hermit@fi dalgo.net INTRODUCTION Porcellanidae Haworth, 1825 = Porcellaniens H. Milne Edwards, 1837 Ng et al. (2008) and McLaughlin et al. (this volume) referred = Porcellaniadae Randall, 1840 to the “windows” to the literature and the “springboards” for = Porcellanodea Henderson 1888 associating species with their scientifi c names that provided = Porcellainea Holmes, 1900 the foundations for subsequent brachyuran, paguroid and lithodoid research. For the porcellanids, one treatise in particular has provided a similar base upon which virtually all DESCRIPTIVE TERMS AND CURRENT STATUS subsequent porcellanid reports have been patterned. Despite its regional focus, Haig’s (1960) monograph of eastern General morphology. – The general body shape is crab- Pacifi c species included 87 of the 225 species estimated to like and the carapace is well calcifi ed. Regions of the dorsal be present worldwide at the time (Chace, 1951). During the integument are not usually well defi ned. The anterior margin last half century the number of genera has increased from of the carapace is produced into a short rostrum or rostral 14 prior to Haig’s (1960) monograph to 30 and the number lobe. -
Neopetrolisthes Maculatus
ISSN: 2635 - 2826 Journal of Clinical & Biomedical Research Research Article Open Access Relative Concentrations of Amino Acids in the Exoskeleton of Male and Female Neopetrolisthes Maculatus Adeyeye EI 1*, Idowu OT 2, Akinsola AF 3, Olatunya AM 1, Popoola OK 1, Ayodele O 3 and Gbolagade AY 4 1Department of Chemistry (Analytical Chemistry Unit), Ekiti State University, P.M.B. 5363, Ado-Ekiti, Nigeria 2Department of Chemistry, Afe Babalola University, Ado-Ekiti, Ekiti State, Nigeria 3Department of Industrial Chemistry, Ekiti State University, P.M.B. 5363, Ado-Ekiti, Nigeria 4Central Laboratory, Ekiti State University, P.M.B. 5363, Ado-Ekiti, Nigeria ABSTRACT Amino acid levels in the exoskeleton of the heterosexual samples of Neopetrolisthes maculatus were evaluated. Twenty parameters were reported on; 13 of these values were greater in the female than the male (i.e. 13/20 or 65.0%). Values in female > male were observed in Val, Thr, Lys, Met, Phe, Trp, Gly, Ala, Asp, Arg, Cys, total amino acids and protein. The variations between the male and female amino acid values were low having coefficient of variation percent range of 0.0579-16.9. The amino acid levels were significantly different between the heterosexuals at 0.01r= . Limiting amino acids on the various scoring standards were egg (Cys=0.3172 and 0.3511), provisional essential amino acid scoring pattern (Lys = 0.4145 and 0.4746), preschool child requirements (Lys =0.3930 and 0.4501) and all the three scores were significantly different at 0.01r= . The EAAI1 (compared to soybean) were 1.18 (male) and 1.16 (female), EAAI2 (compared to egg) were 88.5 (male) and 88.3 (female); their corresponding BV were 84.7 and 84.5. -
A Comparative Analysis of Morphological, Physiological, And
AN ABSTRACT OF THE THESIS OF Jonathon Harris Stillman for the degree of Doctor of Philosophy in Zoology presented on December 4, 1998. Title: A Comparative Analysis of Morphological, Physiological, and Biochemical Adaptation to Abiotic Stress in Intertidal Porcelain Crabs, Genus Petrolisthes. Redacted for Privacy Abstract approved: George N. Somero Organismal tolerance to abiotic environmental stresses contributes significantly to setting the distribution limits of organisms, as demonstrated by vertical zonation patterns in the marine intertidal zone. In this thesis, the ultimate (evolutionary) and proximate (mechanistic) causes of tolerance to temperature and emersion stresses associated with the intertidal zone were examined using porcelain crabs, genus Petrolisthes. Species of Petrolisthes from intertidal and subtidal microhabitats of four biogeographic regions of the Eastern Pacific were used in phylogenetically-based comparative analyses of morphological, physiological, and biochemical adaptation to environmental stress. A phylogenetic tree based on the sequence of the 16sRNA gene was developed to facilitate these analyses. Organismal thermal tolerance limits are adapted to match maximal microhabitat temperatures. Acclimation of thermal tolerance limits suggests that temperate intertidal zone species are living close to their thermal maximum in nature. Respiratory responses to emersion vary among species from different vertical zones. Experimental examination of oxygen consumption rates and lactate accumulation during emersion suggests that intertidal species are able to respire in air using thin membranous regions on the ventral meral segments of their legs (leg membranes). Leg membrane size is positively correlated with body size across species, but not within a single species. Evolutionary analyses indicate that leg membranes may not have evolved for purposes of aerial respiration, but their presence may have allowed intertidal and subtidal species to achieve larger body sizes and higher metabolic rates. -
The Crabs from Mayotte Island (Crustacea, Decapoda, Brachyura)
THE CRABS FROM MAYOTTE ISLAND (CRUSTACEA, DECAPODA, BRACHYURA) Joseph Poupin, Régis Cleva, Jean-Marie Bouchard, Vincent Dinhut, and Jacques Dumas Atoll Research Bulletin No. 617 1 May 2018 Washington, D.C. All statements made in papers published in the Atoll Research Bulletin are the sole responsibility of the authors and do not necessarily represent the views of the Smithsonian Institution or of the editors of the bulletin. Articles submitted for publication in the Atoll Research Bulletin should be original papers and must be made available by authors for open access publication. Manuscripts should be consistent with the “Author Formatting Guidelines for Publication in the Atoll Research Bulletin.” All submissions to the bulletin are peer reviewed and, after revision, are evaluated prior to acceptance and publication through the publisher’s open access portal, Open SI (http://opensi.si.edu). Published by SMITHSONIAN INSTITUTION SCHOLARLY PRESS P.O. Box 37012, MRC 957 Washington, D.C. 20013-7012 https://scholarlypress.si.edu/ The rights to all text and images in this publication are owned either by the contributing authors or by third parties. Fair use of materials is permitted for personal, educational, or noncommercial purposes. Users must cite author and source of content, must not alter or modify the content, and must comply with all other terms or restrictions that may be applicable. Users are responsible for securing permission from a rights holder for any other use. ISSN: 0077-5630 (online) This work is dedicated to our friend Alain Crosnier, great contributor for crab sampling in Mayotte region between 1958-1971 and author of several important taxonomic contributions in the region. -
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
Rissoides Desmaresti INPN
1 La squille de Desmarest Rissoides desmaresti (Risso, 1816) Citation de cette fiche : Noël P., 2016. La squille de Desmarest Rissoides desmaresti (Risso, 1816). in Muséum national d'Histoire naturelle [Ed.], 5 décembre 2016. Inventaire national du Patrimoine naturel, pp. 1-10, site web http://inpn.mnhn.fr Contact de l'auteur : Pierre Noël, SPN et DMPA, Muséum national d'Histoire naturelle, 43 rue Buffon (CP 48), 75005 Paris ; e-mail [email protected] Résumé La squille de Desmarest est de taille moyenne, elle peut atteindre 10 cm de long. Son corps est très allongé, aplati. L'œil est très mobile. La griffe de sa patte ravisseuse porte 5 dents, dent apicale comprise. Le telson a une carène médiane bien marquée ; il est très épineux. Les mâles sont beige moucheté, et les femelles ont le centre du corps rose lorsqu'elles sont en vitellogenèse. La femelle tient ses œufs devant la bouche pendant l'incubation. Il y a neuf stades larvaires ; les larves sont planctoniques. La squille vit dans un terrier ayant une forme en "U". C'est un prédateur de petite faune vagile. Cette squille se rencontre dans l'Atlantique européen et dans toute la Méditerranée. Elle fréquente les herbiers de phanérogames marines et divers sédiments sableux jusqu'à une centaine de mètres de profondeur. Figure 1. Vue dorsale d'un spécimen catalan ; 4 mars 1975, Figure 2. Carte de distribution en France -7m, herbier du Racou (66). Photo © Jean Lecomte. métropolitaine. © P. Noël INPN-MNHN 2016. Classification : Phylum Arthropoda Latreille, 1829 > Sub-phylum Crustacea Brünnich, 1772 > Super-classe Multicrustacea Regier, Shultz, Zwick, Hussey, Ball, Wetzer, Martin & Cunningham, 2010 > Classe Malacostraca Latreille, 1802 > Sous-classe Eumalacostraca Grobben, 1892 > Super- ordre Hoplocarida Calman, 1904 > Ordre Stomatopoda Latreille, 1817 > Sous-ordre Unipeltata Latreille, 1825 > Super-famille Squilloidea Latreille, 1803 > Famille Squillidae Latreille, 1803 > Genre Rissoides Manning et Lewinsohn, 1982. -
Porcellanidae (Crustacea: Decapoda: Anomura) from Christmas and Cocos (Keeling) Islands
RAFFLES BULLETIN OF ZOOLOGY 2014 RAFFLES BULLETIN OF ZOOLOGY Supplement No. 30: 255–262 Date of publication: 25 December 2014 http://zoobank.org/urn:lsid:zoobank.org:pub:A6CFEB01-E342-4F91-92C0-97C6EA3C94CC Porcellanidae (Crustacea: Decapoda: Anomura) from Christmas and Cocos (Keeling) Islands Masayuki Osawa Abstract. Eight porcellanid species are reported from Christmas Island and the Cocos (Keeling) Islands in the southeastern Indian Ocean, based on specimens collected by three expeditions to the islands from 2010 to 2012. Of them, five species are new local records: Petrolisthes asiaticus (Leach, 1820), P. bispinosus Borradaile, 1900, P. fimbriatus Borradaile, 1898, P. pubescens Stimpson, 1858, and P. scabriculus (Dana, 1852). Petrolisthes bispinosus and P. fimbriatus are reported for the first time from the Indian Ocean. Key words. Crustacea, Decapoda, Porcellanidae, eastern Indian Ocean, new records INTRODUCTION This paper reports on porcellanids collected by three expeditions to Christmas and Cocos (Keeling) Islands from The family Porcellanidae is a group of crab-shaped anomuran 2010 to 2012, carried out by staff of the Lee Kong Chian crustaceans and belongs to the superfamily Galatheoidea Natural History Museum (formerly Raffles Museum of together with other three familes, Galatheidae, Munididae, Biodiversity Research), National University of Singapore, and Munidopsidae (Ahyong et al., 2010). The porcellanids supported by staff of the Parks Australia and the Queensland are commonly found in rocky and coral reefs of temperate Museum. The collection is small, but includes five species and tropical coasts. The best known genus is probably that represent new records from those islands. Petrolisthes Stimpson, 1858, which is the most species-rich in the family with 107 species currently recognised (Osawa The material examined is deposited in the Zoological & McLaughlin, 2010; Osawa & Uyeno, 2013; Naderloo & Reference Collection (ZRC) of the Lee Kong Chian Natural Apel, 2014). -
Crustacean Phylogeny…? Nauplius • First Larva Stage of Most “It Can Be Concluded That Crustacean Crustaceans
Bio 370 Crustacea Main arthropod clades (Regier et al 2010) Phylum Arthropoda http://blogs.discoverm • Trilobita agazine.com/loom/201 0/02/10/blind-cousins- Subphylum (or Class) Crustacea to-the-arthropod- • Chelicerata superstars/ Mostly aquatic, with calcified exoskeleton. • Mandibulata – Myriapoda (Chilopoda, Diplopoda) Head derived from acron plus next five segments- so primitively has 5 pairs of appendages: – Pancrustacea • Oligostraca (Ostracoda, Branchiura) -2 pair antennae • Altocrustacea - 1 pair of jaws – Vericrustacea - 2 pair of maxillae » (Branchiopoda, Decapoda) - usually a median (cyclopean) eye and – Miracrustacea one pair of compound eyes » Xenocarida (Remipedia, Cephalocarida) » Hexapoda Tagmosis of trunk varies in different taxa Crustacean phylogeny…? Nauplius • first larva stage of most “It can be concluded that crustacean crustaceans. phylogeny remains essentially unresolved. • three pairs of appendages • single median (naupliar) eye Conflict is rife, irrespective of whether one compares different morphological studies, molecular studies, or both.” Appendages: Jenner, 2010: Arthropod Structure & Development 39:143– -1st antennae 153 -2nd antennae - mandibles 1 Bio 370 Crustacea Crustacean taxa you should know Remipede habitat: a sea cave “blue hole” on Andros Island. Seven species are found in the Bahamas. Class Remipedia Class Malacostraca Class Branchiopoda “Peracarida”-marsupial crustacea Notostraca –tadpole shrimp Isopoda- isopods Anostraca-fairy shrimp Amphipoda- amphipods Cladocera- water fleas Mysidacea- mysids Conchostraca- clam shrimp “Eucarida” Class Maxillopoda Euphausiacea- krill Ostracoda- ostracods Decapoda- decapods- ten leggers Copepoda- copepods Branchiura- fish lice Penaeoidea- penaeid shrimp Cirripedia- barnacles Caridea- carid shrimp Astacidea- crayfish & lobsters Brachyura- true crabs Anomura- false crabs “Stomatopoda”– mantis shrimps Class Remipedia Remipides found only in sea caves in the Caribbean, the Canary Islands, and Western Australia (see pink below). -
Fossil Calibrations for the Arthropod Tree of Life
bioRxiv preprint doi: https://doi.org/10.1101/044859; this version posted June 10, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. FOSSIL CALIBRATIONS FOR THE ARTHROPOD TREE OF LIFE AUTHORS Joanna M. Wolfe1*, Allison C. Daley2,3, David A. Legg3, Gregory D. Edgecombe4 1 Department of Earth, Atmospheric & Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA 2 Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK 3 Oxford University Museum of Natural History, Parks Road, Oxford OX1 3PZ, UK 4 Department of Earth Sciences, The Natural History Museum, Cromwell Road, London SW7 5BD, UK *Corresponding author: [email protected] ABSTRACT Fossil age data and molecular sequences are increasingly combined to establish a timescale for the Tree of Life. Arthropods, as the most species-rich and morphologically disparate animal phylum, have received substantial attention, particularly with regard to questions such as the timing of habitat shifts (e.g. terrestrialisation), genome evolution (e.g. gene family duplication and functional evolution), origins of novel characters and behaviours (e.g. wings and flight, venom, silk), biogeography, rate of diversification (e.g. Cambrian explosion, insect coevolution with angiosperms, evolution of crab body plans), and the evolution of arthropod microbiomes. We present herein a series of rigorously vetted calibration fossils for arthropod evolutionary history, taking into account recently published guidelines for best practice in fossil calibration. -
Balanus Nubilus Class: Multicrustacea, Hexanauplia, Thecostraca, Cirripedia
Phylum: Arthropoda, Crustacea Balanus nubilus Class: Multicrustacea, Hexanauplia, Thecostraca, Cirripedia Order: Thoracica, Sessilia, Balanomorpha The giant barnacle Family: Balanoidea, Balanidae, Balaninae Description Plates: Calcareous, nearly coni- Size: Largest barnacle on the Pacific coast, cal and columnar. Six in family Balanidae. and probably in the world (Ricketts and Cal- Each plate is composed of parietes (exposed vin 1971), with individuals up to 100 mm in triangular part), alae (the plate overlapping diameter, and nearly as tall (Cornwall 1951). plate edges) and radii (the plate edge marked The illustrated specimen (from Coos Bay) is off from the parietes by a definite change in 90 mm in diameter. direction of growth lines) (Newman 2007). Color: Shell dirty white with interior of scuta The plates themselves include the carina, the and terga (see Plate 18, Kozloff 1993) buff carinolateral plates and the compound ros- and tergal beak usually purple tipped trum (see Fig. 3, Balanus glandula, this (Cornwall 1951). guide). Internal surfaces with fine horizontal General Morphology: Members of the Cirri- ribbing above and smooth near base, particu- pedia, or barnacles, can be recognized by larly in older specimens (Pilsbry 1916). Radii their feathery thoracic limbs (called cirri) that rather narrow (Darwin 1854). are used for feeding. There are six pairs of Opercular Valves: Thick and yellow- cirri in B. nubilus. Sessile barnacles are sur- ish, buff on interior but never white. Tergal rounded by a shell that is composed of a flat beaks project above orifice edge (Cornwall basis attached to the substratum, a wall 1977). Tergal and scutal adductor and de- formed by several articulated plates (six in pressor muscles are very thick in B.