Vascular Extracellular Matrix and Aortic Development

Total Page:16

File Type:pdf, Size:1020Kb

Vascular Extracellular Matrix and Aortic Development 6 ____________________________________________________________________________ Vascular Extracellular Matrix and Aortic Development Cassandra M. Kelleher, Sean E. McLean, and Robert P. Mecham Washington University School of Medicine Department of Cell Biology and Physiology St. Louis, Missouri 63110 I. Introduction II. Vessel Wall Formation and Structure III. The Vascular Extracellular Matrix IV. Collagens A. Genotype–Phenotype Correlations Resulting from Mutations in the Vascular Fibrillar Collagens V. The Elastic Fiber A. Elastin B. Fibrillin and Microfibrils VI. Fibulins A. Fibulin-1 B. Fibulin-2 C. Fibulins-3 and -4 D. Fibulin-5 VII. EMILIN/Multimerin Family VIII. Fibronectin IX. The Basement Membrane A. Laminins B. Entactin/Nidogen X. Proteoglycans A. Large Proteoglycans That Form Aggregates by Interaction with Hyaluronan B. Small Leucine Rich Proteoglycans XI. Matricellular Proteins A. Thrombospondins B. Tenascins C. SPARC (osteonectin) XII. Correlation of Matrix Gene Expression Profile with Cytoskeletal Markers XIII. Conclusions Acknowledgments References Current Topics in Developmental Biology, Vol. 62 Copyright 2004, Elsevier Inc. All rights reserved. 153 0070-2153/04 $35.00 154 Kelleher et al. I. Introduction With the emergence of a high-pressure, pulsatile circulatory system in verte- brates came a remarkable change in blood vessel structure and function. Blood vessels no longer acted as simple tubes for channeling blood or other body fluids from a low-pressure heart. In this closed circulatory system, large arteries became an important component of proper cardiac function by serving as elastic reservoirs, enabling the arterial tree to undergo large- volume changes with little change in pressure. Without elastic vessels, the tremendous surge of pressure as blood ejected from the heart would inhibit the heart from emptying, and the pressure in the vessels would fall so rapidly that the heart could not refill. Furthermore, distension of the elastic arterial wall by blood pushed from the heart is translated into kinetic energy when the arterial wall contracts, which helps move the blood down the vascular tree. The change that brought about this critical step in the evolution of higher organisms was the emergence of a vascular wall containing cells specialized in the production and organization of an extracellular matrix (ECM) uniquely designed to provide elastic recoil. In addition to providing the structural and mechanical properties required for vessel function, the ECM provides instructional signals that induce, define, and stabilize smooth muscle phenotypes. There are many examples of ECM molecules playing critical roles in the regulation of gene expression by interacting with specific matrix receptors on cells and by binding and storing growth factors that influence cellular function. This reciprocal instructive interaction between the cell and its ECM is important in directing the developmental transitions that occur in embryogenesis, postnatal devel- opment, and in response to injury. How vascular cells interpret these regulatory signals is a major area of research today. This review will discuss the ECM molecules made by vessel wall cells during vascular development, with the primary focus on the developing mouse aorta. Several excellent reviews have summarized our current under- standing of smooth muscle cell phenotypes based on expression of cytoskel- etal and other marker proteins (Glukhova and Koteliansky, 1995; Hungerford et al., 1996; Owens, 1995). There are also numerous ultrastruc- tural studies documenting the architecture of the developing vessel wall (Albert, 1972; Berry et al., 1972; Gerrity and CliV, 1975; Haust et al., 1965; Karrer, 1961; Paule, 1963; Pease and Paule, 1960; Thyberg et al., 1979), although most of these studies have been in animals other than mouse. The morphogenesis of the aortic wall in the rat, however, has been well investigated (Berry et al., 1972; CliV, 1967; Gerrity and CliV, 1975; Nakamura, 1988; Paule, 1963; Pease and Paule, 1960) and shows many similarities with mouse wall structure (Davis, 1993; Karrer, 1961). For the 6. Vascular Matrix and Aortic Development 155 interested reader, extensive information on the vascular smooth muscle cell and a still timely discussion of questions and issues driving research in vascular biology can be found in a monograph by Schwartz and Mecham (1995). II. Vessel Wall Formation and Structure While the role of endothelial cells in the formation of the vascular primordia is beginning to be well understood (Carmeliet, 2000; Drake et al., 1998; Rossant and Howard, 2002), surprisingly little is known about how vessels acquire their coat of smooth muscle cells that make up the vessel wall. Presumptive vascular smooth muscle cells (VSMCs) form from the sur- rounding mesenchyme and/or cardiac neural crest in response to soluble factors secreted by endothelial cells. The angiopoietin/Tie receptor pathway (Dumont et al., 1995; Sato et al., 1993) is clearly a major player in early stages of this process, but questions remain about what other factors guide smooth muscle diVerentiation through the various stages of vessel wall formation. Complicating our understanding of the VSMC is the cellular heterogeneity (Frid et al., 1994; Gittenberger-de Groot et al., 1999) and phenotypic plasticity (Schwartz and Mecham, 1995) observed during em- bryogenesis and vessel maturation. As the vessel wall matures, the SMCs go through multiple overlapping phenotypic transitions, characterized broadly by cellular proliferation, matrix production, and the assembly of an appropriate contractile apparatus within the cell cytoplasm. In medium and large vessels, the major function of the SMC is to synthesize and organize the unique extracellular matrix responsible for the mechanical properties of the wall. Unlike cells in the small muscular and resistance vessels, the smooth muscle cells of the elastic conducting vessels contribute little to the static mechanical properties of the wall. Hence, their ability to produce ECM can be considered to be their ‘‘diVerentiated’’ phenotype. Because the formation of a functional extracellular matrix must occur in an organized sequence, the ‘‘matrix phenotype’’ is changing throughout the entire period of vessel wall development. As pointed out by Little and colleagues (Drake et al., 1998; Hungerford et al., 1996), the expression pattern of ECM proteins may be a better indicator of VSMC diVerentiation status than the presence or absence of intracellular markers. The general histological form of the large blood vessels includes three compartments: the tunica intima, consisting of a single layer of endothelial cells that sit directly on the internal elastic lamina (IEL); the tunica media, consisting of concentric layers of smooth muscle cells between sheets of elastin (the elastic laminae); and the tunica adventitia, made up of myofibro- blasts that produce mainly collagen fibers. Within the medial layer, the 156 Kelleher et al. collagen and elastin fibers are arranged to form a ‘‘two phase’’ system, in which circumferentially aligned collagen fibers of high tensile strength and elastic modulus bear most of the stressing force at and above physiologic blood pressure. Elastin, which is distensible and has a low tensile strength, functions primarily as an elastic reservoir and distributes stress evenly throughout the wall and onto collagen fibers (Berry et al., 1972; Gerrity and CliV, 1975; Wolinsky and Glagov, 1967). The number of lamellar units (generally defined as the elastic lamella and adjacent smooth muscle cells) in a vascular segment is related linearly to tensional forces within the wall (Clark and Glagov, 1985; Leung et al., 1977; Wolinsky and Glagov, 1967), with the greatest number of elastic layers occurring in the larger, more proximal vessels that experience the highest wall stress. A role for hemodynamics in vessel wall development (Folkow, 1983; Langille, 1996) and in modulating elastin production (Faury et al., 2003; Keeley and Alatawi, 1991; Keeley and Johnson, 1986) has been suggested from numerous studies of vascular remodeling in response to altered pres- sure and flow. In the developing chick coronary artery, for example, SMC recruitment from undiVerentiated mesenchyme does not occur until the connection to the aorta is made and actual blood flow through these vessels has begun (BergwerV et al., 1996). When the vessel wall is forming, SMC diVerentiation, lamellar number, and elastin content coordinately increase with the gradual rise in blood pressure until the proper number of lamellar units are organized (Nakamura, 1988; Roach, 1983). The relatively constant tension per lamellar unit and their uniformity of composition, regardless of species, indicate that the proportion of collagen, elastin, and SMCs in the media is optimal for the stresses to which the aorta is subjected (Wolinsky and Glagov, 1967). III. The Vascular Extracellular Matrix In addition to the structural matrix proteins (collagen, elastin, proteogly- cans, etc.), vascular cells must produce matrix macromolecules that are important for cell movement, polarization, and anchorage. These molecules, which include adhesive glycoproteins such as fibronectin, basement mem- brane components, and the matricellular proteins that modulate cell–matrix interactions, provide important informational signals to cells that can influ- ence gene expression and cellular function. To identify the types of matrix proteins produced by SMCs and to compare their expression pattern with
Recommended publications
  • Transcriptomic Analysis of Human Brain Microvascular Endothelial
    www.nature.com/scientificreports OPEN Transcriptomic analysis of human brain microvascular endothelial cells exposed to laminin binding protein (adhesion lipoprotein) and Streptococcus pneumoniae Irene Jiménez‑Munguía1, Zuzana Tomečková1, Evelína Mochnáčová1, Katarína Bhide1, Petra Majerová2 & Mangesh Bhide1,2* Streptococcus pneumoniae invades the CNS and triggers a strong cellular response. To date, signaling events that occur in the human brain microvascular endothelial cells (hBMECs), in response to pneumococci or its surface adhesins are not mapped comprehensively. We evaluated the response of hBMECs to the adhesion lipoprotein (a laminin binding protein—Lbp) or live pneumococci. Lbp is a surface adhesin recently identifed as a potential ligand, which binds to the hBMECs. Transcriptomic analysis was performed by RNA‑seq of three independent biological replicates and validated with qRT‑PCR using 11 genes. In total 350 diferentially expressed genes (DEGs) were identifed after infection with S. pneumoniae, whereas 443 DEGs when challenged with Lbp. Total 231 DEGs were common in both treatments. Integrative functional analysis revealed participation of DEGs in cytokine, chemokine, TNF signaling pathways and phagosome formation. Moreover, Lbp induced cell senescence and breakdown, and remodeling of ECM. This is the frst report which maps complete picture of cell signaling events in the hBMECs triggered against S. pneumoniae and Lbp. The data obtained here could contribute in a better understanding of the invasion of pneumococci across BBB and underscores role of Lbp adhesin in evoking the gene expression in neurovascular unit. Streptococcus pneumoniae (also known as pneumococcus) is a life-threatening pathogen responsible for high morbidity and mortality rates worldwide1. It can cross the blood–brain barrier (BBB) and cause meningitis, commonly known as pneumococcal meningitis, a rare but life-threatening medical emergency.
    [Show full text]
  • The Rise and Fall of the Bovine Corpus Luteum
    University of Nebraska Medical Center DigitalCommons@UNMC Theses & Dissertations Graduate Studies Spring 5-6-2017 The Rise and Fall of the Bovine Corpus Luteum Heather Talbott University of Nebraska Medical Center Follow this and additional works at: https://digitalcommons.unmc.edu/etd Part of the Biochemistry Commons, Molecular Biology Commons, and the Obstetrics and Gynecology Commons Recommended Citation Talbott, Heather, "The Rise and Fall of the Bovine Corpus Luteum" (2017). Theses & Dissertations. 207. https://digitalcommons.unmc.edu/etd/207 This Dissertation is brought to you for free and open access by the Graduate Studies at DigitalCommons@UNMC. It has been accepted for inclusion in Theses & Dissertations by an authorized administrator of DigitalCommons@UNMC. For more information, please contact [email protected]. THE RISE AND FALL OF THE BOVINE CORPUS LUTEUM by Heather Talbott A DISSERTATION Presented to the Faculty of the University of Nebraska Graduate College in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Biochemistry and Molecular Biology Graduate Program Under the Supervision of Professor John S. Davis University of Nebraska Medical Center Omaha, Nebraska May, 2017 Supervisory Committee: Carol A. Casey, Ph.D. Andrea S. Cupp, Ph.D. Parmender P. Mehta, Ph.D. Justin L. Mott, Ph.D. i ACKNOWLEDGEMENTS This dissertation was supported by the Agriculture and Food Research Initiative from the USDA National Institute of Food and Agriculture (NIFA) Pre-doctoral award; University of Nebraska Medical Center Graduate Student Assistantship; University of Nebraska Medical Center Exceptional Incoming Graduate Student Award; the VA Nebraska-Western Iowa Health Care System Department of Veterans Affairs; and The Olson Center for Women’s Health, Department of Obstetrics and Gynecology, Nebraska Medical Center.
    [Show full text]
  • Platelet Membrane Glycoproteins: a Historical Review*
    577 Platelet Membrane Glycoproteins: A Historical Review* Alan T. Nurden, PhD1 1 L’Institut de Rhythmologie et Modélisation Cardiaque (LIRYC), Address for correspondence Alan T. Nurden, PhD, L’Institut de Plateforme Technologique et d’Innovation Biomédicale (PTIB), Rhythmologie et Modélisation Cardiaque, Plateforme Technologique Hôpital Xavier Arnozan, Pessac, France et d’Innovation Biomédicale, Hôpital Xavier Arnozan, Avenue du Haut- Lévèque, 33600 Pessac, France (e-mail: [email protected]). Semin Thromb Hemost 2014;40:577–584. Abstract The search for the components of the platelet surface that mediate platelet adhesion and platelet aggregation began for earnest in the late 1960s when electron microscopy demonstrated the presence of a carbohydrate-rich, negatively charged outer coat that was called the “glycocalyx.” Progressively, electrophoretic procedures were developed that identified the major membrane glycoproteins (GP) that constitute this layer. Studies on inherited disorders of platelets then permitted the designation of the major effectors of platelet function. This began with the discovery in Paris that platelets of patients with Glanzmann thrombasthenia, an inherited disorder of platelet aggregation, Keywords lacked two major GP. Subsequent studies established the role for the GPIIb-IIIa complex ► platelet (now known as integrin αIIbβ3)inbindingfibrinogen and other adhesive proteins on ► inherited disorder activated platelets and the formation of the protein bridges that join platelets together ► membrane in the platelet aggregate. This was quickly followed by the observation that platelets of glycoproteins patients with the Bernard–Soulier syndrome, with macrothrombocytopenia and a ► Glanzmann distinct disorder of platelet adhesion, lacked the carbohydrate-rich, negatively charged, thrombasthenia GPIb. It was shown that GPIb, through its interaction with von Willebrand factor, ► Bernard–Soulier mediated platelet attachment to injured sites in the vessel wall.
    [Show full text]
  • Surface Glycoproteomic Analysis of Hepatocellular Carcinoma Cells by Affinity Enrichment and Mass Spectrometric Identification
    Glycoconj J (2012) 29:411–424 DOI 10.1007/s10719-012-9420-3 Surface glycoproteomic analysis of hepatocellular carcinoma cells by affinity enrichment and mass spectrometric identification Wei Mi & Wei Jia & Zhaobin Zheng & Jinglan Wang & Yun Cai & Wantao Ying & Xiaohong Qian Received: 14 April 2012 /Revised: 5 June 2012 /Accepted: 12 June 2012 /Published online: 1 July 2012 # Springer Science+Business Media, LLC 2012 Abstract Cell surface glycoproteins are one of the most surface-capturing (CSC) technique was an approach specif- frequently observed phenomena correlated with malignant ically targeted at membrane glycoproteins involving the growth. Hepatocellular carcinoma (HCC) is one of the most affinity capture of membrane glycoproteins using glycan malignant tumors in the world. The majority of hepatocel- biotinylation labeling on intact cell surfaces. To characterize lular carcinoma cell surface proteins are modified by glyco- the cell surface glycoproteome and probe the mechanism of sylation in the process of tumor invasion and metastasis. tumor invasion and metastasis of HCC, we have modified Therefore, characterization of cell surface glycoproteins can and evaluated the cell surface-capturing strategy, and ap- provide important information for diagnosis and treatment plied it for surface glycoproteomic analysis of hepatocellu- of liver cancer, and also represent a promising source of lar carcinoma cells. In total, 119 glycosylation sites on 116 potential diagnostic biomarkers and therapeutic targets for unique glycopeptides were identified, corresponding to 79 hepatocellular carcinoma. However, cell surface glycopro- different protein species. Of these, 65 (54.6 %) new pre- teins of HCC have been seldom identified by proteomics dicted glycosylation sites were identified that had not pre- approaches because of their hydrophobic nature, poor solu- viously been determined experimentally.
    [Show full text]
  • ADAM10 Site-Dependent Biology: Keeping Control of a Pervasive Protease
    International Journal of Molecular Sciences Review ADAM10 Site-Dependent Biology: Keeping Control of a Pervasive Protease Francesca Tosetti 1,* , Massimo Alessio 2, Alessandro Poggi 1,† and Maria Raffaella Zocchi 3,† 1 Molecular Oncology and Angiogenesis Unit, IRCCS Ospedale Policlinico S. Martino Largo R. Benzi 10, 16132 Genoa, Italy; [email protected] 2 Proteome Biochemistry, IRCCS San Raffaele Scientific Institute, 20132 Milan, Italy; [email protected] 3 Division of Immunology, Transplants and Infectious Diseases, IRCCS San Raffaele Scientific Institute, 20132 Milan, Italy; [email protected] * Correspondence: [email protected] † These authors contributed equally to this work as last author. Abstract: Enzymes, once considered static molecular machines acting in defined spatial patterns and sites of action, move to different intra- and extracellular locations, changing their function. This topological regulation revealed a close cross-talk between proteases and signaling events involving post-translational modifications, membrane tyrosine kinase receptors and G-protein coupled recep- tors, motor proteins shuttling cargos in intracellular vesicles, and small-molecule messengers. Here, we highlight recent advances in our knowledge of regulation and function of A Disintegrin And Metalloproteinase (ADAM) endopeptidases at specific subcellular sites, or in multimolecular com- plexes, with a special focus on ADAM10, and tumor necrosis factor-α convertase (TACE/ADAM17), since these two enzymes belong to the same family, share selected substrates and bioactivity. We will discuss some examples of ADAM10 activity modulated by changing partners and subcellular compartmentalization, with the underlying hypothesis that restraining protease activity by spatial Citation: Tosetti, F.; Alessio, M.; segregation is a complex and powerful regulatory tool.
    [Show full text]
  • A Selective ER-Phagy Exerts Procollagen Quality Control Via a Calnexin-FAM134B Complex
    Article A selective ER-phagy exerts procollagen quality control via a Calnexin-FAM134B complex Alison Forrester1,†, Chiara De Leonibus1,†, Paolo Grumati2,†, Elisa Fasana3,†, Marilina Piemontese1, Leopoldo Staiano1, Ilaria Fregno3,4, Andrea Raimondi5, Alessandro Marazza3,6, Gemma Bruno1, Maria Iavazzo1, Daniela Intartaglia1, Marta Seczynska2, Eelco van Anken7, Ivan Conte1, Maria Antonietta De Matteis1,8, Ivan Dikic2,9,* , Maurizio Molinari3,10,** & Carmine Settembre1,11,*** Abstract The EMBO Journal (2019) 38:e99847 Autophagy is a cytosolic quality control process that recognizes substrates through receptor-mediated mechanisms. Procollagens, Introduction the most abundant gene products in Metazoa, are synthesized in the endoplasmic reticulum (ER), and a fraction that fails to attain Macroautophagy (hereafter referred to as autophagy) is a homeostatic the native structure is cleared by autophagy. However, how auto- catabolic process devoted to the sequestration of cytoplasmic material phagy selectively recognizes misfolded procollagens in the ER in double-membrane vesicles (autophagic vesicles, AVs) that eventu- lumen is still unknown. We performed siRNA interference, CRISPR- ally fuse with lysosomes where cargo is degraded (Mizushima, 2011). Cas9 or knockout-mediated gene deletion of candidate autophagy Autophagy is essential to maintain tissue homeostasis and counter- and ER proteins in collagen producing cells. We found that the ER- acts both the onset and progression of many disease conditions, such resident lectin chaperone Calnexin (CANX) and the ER-phagy as ageing, neurodegeneration and cancer (Levine et al, 2015). receptor FAM134B are required for autophagy-mediated quality Substrates can be selectively delivered to AVs through receptor- control of endogenous procollagens. Mechanistically, CANX acts as mediated processes. Autophagy receptors harbour a LC3 or GABARAP co-receptor that recognizes ER luminal misfolded procollagens and interaction motif (LIR or GIM, respectively) that facilitate binding of interacts with the ER-phagy receptor FAM134B.
    [Show full text]
  • Detection of Pro Angiogenic and Inflammatory Biomarkers in Patients With
    www.nature.com/scientificreports OPEN Detection of pro angiogenic and infammatory biomarkers in patients with CKD Diana Jalal1,2,3*, Bridget Sanford4, Brandon Renner5, Patrick Ten Eyck6, Jennifer Laskowski5, James Cooper5, Mingyao Sun1, Yousef Zakharia7, Douglas Spitz7,9, Ayotunde Dokun8, Massimo Attanasio1, Kenneth Jones10 & Joshua M. Thurman5 Cardiovascular disease (CVD) is the most common cause of death in patients with native and post-transplant chronic kidney disease (CKD). To identify new biomarkers of vascular injury and infammation, we analyzed the proteome of plasma and circulating extracellular vesicles (EVs) in native and post-transplant CKD patients utilizing an aptamer-based assay. Proteins of angiogenesis were signifcantly higher in native and post-transplant CKD patients versus healthy controls. Ingenuity pathway analysis (IPA) indicated Ephrin receptor signaling, serine biosynthesis, and transforming growth factor-β as the top pathways activated in both CKD groups. Pro-infammatory proteins were signifcantly higher only in the EVs of native CKD patients. IPA indicated acute phase response signaling, insulin-like growth factor-1, tumor necrosis factor-α, and interleukin-6 pathway activation. These data indicate that pathways of angiogenesis and infammation are activated in CKD patients’ plasma and EVs, respectively. The pathways common in both native and post-transplant CKD may signal similar mechanisms of CVD. Approximately one in 10 individuals has chronic kidney disease (CKD) rendering CKD one of the most common diseases worldwide1. CKD is associated with a high burden of morbidity in the form of end stage kidney disease (ESKD) requiring dialysis or transplantation 2. Furthermore, patients with CKD are at signifcantly increased risk of death from cardiovascular disease (CVD)3,4.
    [Show full text]
  • Genetic, Cytogenetic and Physical Refinement of the Autosomal Recessive CMT Linked to 5Q31ð Q33: Exclusion of Candidate Genes I
    European Journal of Human Genetics (1999) 7, 849–859 © 1999 Stockton Press All rights reserved 1018–4813/99 $15.00 t http://www.stockton-press.co.uk/ejhg ARTICLE Genetic, cytogenetic and physical refinement of the autosomal recessive CMT linked to 5q31–q33: exclusion of candidate genes including EGR1 Ang`ele Guilbot1, Nicole Ravis´e1, Ahmed Bouhouche6, Philippe Coullin4, Nazha Birouk6, Thierry Maisonobe3, Thierry Kuntzer7, Christophe Vial8, Djamel Grid5, Alexis Brice1,2 and Eric LeGuern1,2 1INSERM U289, 2F´ed´eration de Neurologie and 3Laboratoire de Neuropathologie R Escourolle, Hˆopital de la Salpˆetri`ere, Paris 4Laboratoire de cytog´en´etique, Villejuif 5G´en´ethon, Evry, France 6Service de Neurologie, Hˆopital des Sp´ecialit´es, Rabat, Morocco 7Service de Neurologie, Centre Hospitalier Universitaire Vaudois, Lausanne, Switzerland 8Service D’EMG et de pathologie neuromusculaire, Hˆopital neurologique Pierre Wertheimer, Lyon, France Charcot-Marie-Tooth disease is an heterogeneous group of inherited peripheral motor and sensory neuropathies with several modes of inheritance: autosomal dominant, X-linked and autosomal recessive. By homozygosity mapping, we have identified, in the 5q23–q33 region, a third locus responsible for an autosomal recessive form of demyelinating CMT. Haplotype reconstruction and determination of the minimal region of homozygosity restricted the candidate region to a 4 cM interval. A physical map of the candidate region was established by screening YACs for microsatellites used for genetic analysis. Combined genetic, cytogenetic and physical mapping restricted the locus to a less than 2 Mb interval on chromosome 5q32. Seventeen consanguineous families with demyelinating ARCMT of various origins were screened for linkage to 5q31–q33.
    [Show full text]
  • Characterization of Glomerular Extracellular Matrix in Iga Nephropathy by Proteomic Analysis of Laser-Captured Microdissected Gl
    Paunas et al. BMC Nephrology (2019) 20:410 https://doi.org/10.1186/s12882-019-1598-1 RESEARCH ARTICLE Open Access Characterization of glomerular extracellular matrix in IgA nephropathy by proteomic analysis of laser-captured microdissected glomeruli Flavia Teodora Ioana Paunas1,2* , Kenneth Finne2, Sabine Leh2,3, Tarig Al-Hadi Osman2, Hans-Peter Marti2,4, Frode Berven5 and Bjørn Egil Vikse1,2 Abstract Background: IgA nephropathy (IgAN) involves mesangial matrix expansion, but the proteomic composition of this matrix is unknown. The present study aimed to characterize changes in extracellular matrix in IgAN. Methods: In the present study we used mass spectrometry-based proteomics in order to quantitatively compare protein abundance between glomeruli of patients with IgAN (n = 25) and controls with normal biopsy findings (n = 15). Results: Using a previously published paper by Lennon et al. and cross-referencing with the Matrisome database we identified 179 extracellular matrix proteins. In the comparison between IgAN and controls, IgAN glomeruli showed significantly higher abundance of extracellular matrix structural proteins (e.g periostin, vitronectin, and extracellular matrix protein 1) and extracellular matrix associated proteins (e.g. azurocidin, myeloperoxidase, neutrophil elastase, matrix metalloproteinase-9 and matrix metalloproteinase 2). Periostin (fold change 3.3) and azurocidin (3.0) had the strongest fold change between IgAN and controls; periostin was also higher in IgAN patients who progressed to ESRD as compared to patients who did not. Conclusion: IgAN is associated with widespread changes of the glomerular extracellular matrix proteome. Proteins important in glomerular sclerosis or inflammation seem to be most strongly increased and periostin might be an important marker of glomerular damage in IgAN.
    [Show full text]
  • Methylome and Transcriptome Maps of Human Visceral and Subcutaneous
    www.nature.com/scientificreports OPEN Methylome and transcriptome maps of human visceral and subcutaneous adipocytes reveal Received: 9 April 2019 Accepted: 11 June 2019 key epigenetic diferences at Published: xx xx xxxx developmental genes Stephen T. Bradford1,2,3, Shalima S. Nair1,3, Aaron L. Statham1, Susan J. van Dijk2, Timothy J. Peters 1,3,4, Firoz Anwar 2, Hugh J. French 1, Julius Z. H. von Martels1, Brodie Sutclife2, Madhavi P. Maddugoda1, Michelle Peranec1, Hilal Varinli1,2,5, Rosanna Arnoldy1, Michael Buckley1,4, Jason P. Ross2, Elena Zotenko1,3, Jenny Z. Song1, Clare Stirzaker1,3, Denis C. Bauer2, Wenjia Qu1, Michael M. Swarbrick6, Helen L. Lutgers1,7, Reginald V. Lord8, Katherine Samaras9,10, Peter L. Molloy 2 & Susan J. Clark 1,3 Adipocytes support key metabolic and endocrine functions of adipose tissue. Lipid is stored in two major classes of depots, namely visceral adipose (VA) and subcutaneous adipose (SA) depots. Increased visceral adiposity is associated with adverse health outcomes, whereas the impact of SA tissue is relatively metabolically benign. The precise molecular features associated with the functional diferences between the adipose depots are still not well understood. Here, we characterised transcriptomes and methylomes of isolated adipocytes from matched SA and VA tissues of individuals with normal BMI to identify epigenetic diferences and their contribution to cell type and depot-specifc function. We found that DNA methylomes were notably distinct between diferent adipocyte depots and were associated with diferential gene expression within pathways fundamental to adipocyte function. Most striking diferential methylation was found at transcription factor and developmental genes. Our fndings highlight the importance of developmental origins in the function of diferent fat depots.
    [Show full text]
  • 2812 Matrix Vesicles: Structure, Composition, Formation and Function in Ca
    [Frontiers in Bioscience 16, 2812-2902, June 1, 2011] Matrix vesicles: structure, composition, formation and function in calcification Roy E. Wuthier Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC 29208 TABLE OF CONTENTS 1. Abstract 2. Introduction 3. Morphology of matrix vesicles (MVs) 3.1. Conventional transmission electron microscopy 3.2. Cryofixation, freeze-substitution electron microscopy 3.3. Freeze-fracture studies 4. Isolation of MVs 4.1. Crude collagenase digestion methods 4.2. Non-collagenase dependent methods 4.3. Cell culture methods 4.4. Modified collagenase digestion methods 4.5. Other isolation methods 5. MV proteins 5.1. Early SDS-PAGE studies 5.2. Isolation and identification of major MV proteins 5.3. Sequential extraction, separation and characterization of major MV proteins 5.4. Proteomic characterization of MV proteins 6. MV-associated extracellular matrix proteins 6.1. Type VI collagen 6.2. Type X collagen 6.3. Proteoglycan link protein and aggrecan core protein 6.4. Fibrillin-1 and fibrillin-2 7. MV annexins – acidic phospholipid-dependent ca2+-binding proteins 7.1. Annexin A5 7.2. Annexin A6 7.3. Annexin A2 7.4. Annexin A1 7.5. Annexin A11 and Annexin A4 8. MV enzymes 8.1. Tissue-nonspecific alkaline phosphatase(TNAP) 8.1.1. Molecular structure 8.1.2. Amino acid sequence 8.1.3. 3-D structure 8.1.4. Disposition in the MV membrane 8.1.5. Catalytic properties 8.1.6. Collagen-binding properties 8.2. Nucleotide pyrophosphate phosphodiesterase (NPP1, PC1) 8.3. PHOSPHO-1 (Phosphoethanolamine/Phosphocholine phosphatase 8.4. Acid phosphatase 8.5.
    [Show full text]
  • Transcriptomic Landscape of Breast Cancers Through Mrna Sequencing Jeyanthy Eswaran George Washington University
    Himmelfarb Health Sciences Library, The George Washington University Health Sciences Research Commons Biochemistry and Molecular Medicine Faculty Biochemistry and Molecular Medicine Publications 2-14-2012 Transcriptomic landscape of breast cancers through mRNA sequencing Jeyanthy Eswaran George Washington University Dinesh Cyanam George Washington University Prakriti Mudvari George Washington University Sirigiri Divijendra Natha Reddy George Washington University Suresh Pakala George Washington University See next page for additional authors Follow this and additional works at: http://hsrc.himmelfarb.gwu.edu/smhs_biochem_facpubs Part of the Biochemistry, Biophysics, and Structural Biology Commons Recommended Citation Eswaran, J., Cyanam, D., Mudvari, P., Reddy, S., Pakala, S., Nair, S., Florea, L., & Fuqua, S. (2012). Transcriptomic landscape of breast cancers through mrna sequencing. Scientific Reports, 2, 264. This Journal Article is brought to you for free and open access by the Biochemistry and Molecular Medicine at Health Sciences Research Commons. It has been accepted for inclusion in Biochemistry and Molecular Medicine Faculty Publications by an authorized administrator of Health Sciences Research Commons. For more information, please contact [email protected]. Authors Jeyanthy Eswaran, Dinesh Cyanam, Prakriti Mudvari, Sirigiri Divijendra Natha Reddy, Suresh Pakala, Sujit S. Nair, Liliana Florea, Suzanne A.W. Fuqua, Sucheta Godbole, and Rakesh Kumar This journal article is available at Health Sciences Research Commons: http://hsrc.himmelfarb.gwu.edu/smhs_biochem_facpubs/3
    [Show full text]