A Review of Leptospira Isolations from “Unconventional” Hosts
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1 Full Title: 12 Novel Clonal Groups of Leptospira Infecting Humans in Multiple
medRxiv preprint doi: https://doi.org/10.1101/2020.08.28.20177097; this version posted December 6, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license . 1 Full Title: 12 Novel Clonal Groups of Leptospira Infecting Humans in Multiple 2 Contrasting Epidemiological Contexts in Sri Lanka 3 4 Dinesha Jayasundara 1,2, Indika Senavirathna 1,3, Janith Warnasekara 1, Chandika Gamage 4, 5 Sisira Siribaddana5, Senanayake Abeysinghe Mudiyanselage Kularatne 6, Michael 6 Matthias7, Mariet JF8, Mathieu Picardeau8, Suneth Agampodi1,7, Joseph Vinetz7 1 7 Leptospirosis Research Laboratory, Department of Community Medicine, Faculty of 8 Medicine and Allied Sciences, Rajarata University of Sri Lanka 2 9 Department of Microbiology, Faculty of Medicine and Allied Sciences, Rajarata 10 University of Sri Lanka 3 11 Department of Biochemistry, Faculty of Medicine and Allied Sciences, Rajarata 12 University of Sri Lanka 4 13 Department of Microbiology, Faculty of Medicine, University of Peradeniya, Sri Lanka 14 5 Department of Medicine, Faculty of Medicine and Allied Sciences, Rajarata University of 15 Sri Lanka 16 6 Department of Medicine, Faculty of Medicine, University of Peradeniya, Sri Lanka 17 7 Yale University school of Medicine, New Haven, Connecticut, USA 18 8 Institut Pasteur, Biology of Spirochetes unit, Paris, France 19 1 NOTE: This preprint reports new research that has not been certified by peer review and should not be used to guide clinical practice. -
Comparative Genomic Analysis of the Genus Leptospira
What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira. Derrick E Fouts, Michael A Matthias, Haritha Adhikarla, Ben Adler, Luciane Amorim-Santos, Douglas E Berg, Dieter Bulach, Alejandro Buschiazzo, Yung-Fu Chang, Renee L Galloway, et al. To cite this version: Derrick E Fouts, Michael A Matthias, Haritha Adhikarla, Ben Adler, Luciane Amorim-Santos, et al.. What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Lep- tospira.. PLoS Neglected Tropical Diseases, Public Library of Science, 2016, 10 (2), pp.e0004403. 10.1371/journal.pntd.0004403. pasteur-01436457 HAL Id: pasteur-01436457 https://hal-pasteur.archives-ouvertes.fr/pasteur-01436457 Submitted on 16 Apr 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons CC0 - Public Domain Dedication| 4.0 International License RESEARCH ARTICLE What Makes a Bacterial Species Pathogenic?: Comparative Genomic Analysis of the Genus Leptospira Derrick E. Fouts1*, Michael A. Matthias2, Haritha Adhikarla3, Ben Adler4, Luciane Amorim- Santos3,5, Douglas E. Berg2, Dieter Bulach6, Alejandro Buschiazzo7,8, Yung-Fu Chang9, Renee L. Galloway10, David A. Haake11,12, Daniel H. Haft1¤, Rudy Hartskeerl13, Albert I. -
Moinetphdthesis.Pdf
Copyright is owned by the Author of the thesis. Permission is given for a copy to be downloaded by an individual for the purpose of research and private study only. The thesis may not be reproduced elsewhere without the permission of the Author. A thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Veterinary Science at Massey University, Palmerston North, New Zealand. Marie Moinet 2020 © Marie Moinet 2020 Abstract Leptospirosis is an important zoonosis in New Zealand where it has historically been associated with livestock. Formerly negligible in human cases notified, Leptospira borgpetersenii serovar Ballum—associated with rodents and hedgehogs (Erinaceus europaeus)—is now preponderant. The role of wild introduced mammals in the epidemiology of leptospirosis has been overlooked in New Zealand but remains a critical question. In this thesis, we determined the prevalence of Leptospira serovars, renal colonisation and seroprevalence in wild mammals and sympatric livestock. During a cross- sectional and a longitudinal survey, house mice (Mus musculus), ship rats (Rattus rattus) and hedgehogs were trapped in farms with a history of leptospirosis to collect sera and kidneys. Urine and sera from livestock (dairy or beef cattle, sheep) and dogs were also collected on the same farms. Sera were tested by microagglutination test to identify serovars/serogroups that circulate in wildlife for comparison with those circulating in livestock. Urine and kidney samples were used to determine prevalence by qPCR, to isolate circulating leptospires by culture and subject them to whole genome sequencing, in order to determine their phylogenetic relationships and compare them to other sequences locally, nationally and internationally. -
University of Malaya Kuala Lumpur
EPIDEMIOLOGY OF HUMAN LEPTOSPIROSIS AND MOLECULAR CHARACTERIZATION OF Leptospira spp. ISOLATED FROM THE ENVIRONMENT AND ANIMAL HOSTS IN PENINSULAR BENACER DOUADI FACULTY OF SCIENCE UniversityUNIVERSITY OF of MALAYA Malaya KUALA LUMPUR 2017 EPIDEMIOLOGY OF HUMAN LEPTOSPIROSIS AND MOLECULAR CHARACTERIZATION OF Leptospira spp. ISOLATED FROM THE ENVIRONMENT AND ANIMAL HOSTS IN PENINSULAR MALAYSIA BENACER DOUADI THESIS SUBMITTED IN FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY INSTITUTE OF BIOLOGICAL SCIENCES UniversityFACULTY OF SCIENCEof Malaya UNIVERSITY OF MALAYA KUALA LUMPUR 2017 ABSTRACT Leptospirosis is a globally important zoonotic disease caused by spirochetes from the genus Leptospira. Transmission to humans occurs either directly from exposure to contaminated urine or infected tissues, or indirectly via contact with contaminated soil or water. In Malaysia, leptospirosis is an important emerging zoonotic disease with dramatic increase of reported cases over the last decade. However, there is a paucity of data on the epidemiology and genetic characteristics of Leptopsira in Malaysia. The first objective of this study was to provide an epidemiological description of human leptospirosis cases over a 9-year period (2004–2012) and disease relationship with meteorological, geographical, and demographical information. An upward trend of leptospirosis cases were reported between 2004 to 2012 with a total of 12,325 cases recorded. Three hundred thirty-eight deaths were reported with an overall case fatality rate of 2.74%, with higher incidence in males (9696; 78.7%) compared with female patients (2629; 21.3%). The average incidence was highest amongst Malays (10.97 per 100,000 population), followed by Indians (7.95 per 100,000 population). -
International Committee on Systematic Bacteriology Subcommittee on the Taxonomy of Leptospira Minutes of Meetings, 1 and 2 July 1994, Prague, Czech Republic
INTERNATIONALJOURNAL OF SYSTEMATICBACTERIOLOGY, Oct. 1995, p. 872-874 Vol. 45. No. 4 0020-77 13/95/$04.00+ 0 International Committee on Systematic Bacteriology Subcommittee on the Taxonomy of Leptospira Minutes of Meetings, 1 and 2 July 1994, Prague, Czech Republic Minute 1. Call to order. The meeting was called to order by The subcommittee expressed general concern about the the Secretary, R. Marshall, at 0930 on 1 July 1994. The opening WHO’S lack of support. consisted of a welcoming introduction, following which R. Minute 9. Usefiklness of PCR-based strategies (MRSP and Marshall was unanimously asked to act as Chairman for the PCR} for genospecies delimitation and molecular typing. P. Pero- meeting in the absence, because of illness, of the chairman, K. lat presented a paper on the use of two PCR-based character- Yanagawa. W. Ellis accepted the job of meeting Secretary. ization methods for Leptospira reference strains and isolates. Following this meeting there were additional open meetings at Arbitrarily primed PCR generates simple and reproducible 1400 on 1 July 1994 and at 0900 on 2 July 1994. A closed fingerprints that can be used to identify leptospires at both the meeting was held at 1300 on 2 July 1994. genospecies and serovar levels and for molecular epidemiol- Minute 2. Record of attendance. The members present were ogy. Furthermore, a new PCR strategy, which is based on the R. Marshall (Secretary), B. Cacciapuoti, M. Cinco, H. Dikken, study of mapped restriction site polymorphisms (MRSP) in W. Ellis, S. Faine, E. Kmety, R. Johnson, N. Stallman, W. PCR-amplified rrs (16s rRNA) and M (23s rRNA) eubacterial Terpstra, and Y. -
CGM-18-001 Perseus Report Update Bacterial Taxonomy Final Errata
report Update of the bacterial taxonomy in the classification lists of COGEM July 2018 COGEM Report CGM 2018-04 Patrick L.J. RÜDELSHEIM & Pascale VAN ROOIJ PERSEUS BVBA Ordering information COGEM report No CGM 2018-04 E-mail: [email protected] Phone: +31-30-274 2777 Postal address: Netherlands Commission on Genetic Modification (COGEM), P.O. Box 578, 3720 AN Bilthoven, The Netherlands Internet Download as pdf-file: http://www.cogem.net → publications → research reports When ordering this report (free of charge), please mention title and number. Advisory Committee The authors gratefully acknowledge the members of the Advisory Committee for the valuable discussions and patience. Chair: Prof. dr. J.P.M. van Putten (Chair of the Medical Veterinary subcommittee of COGEM, Utrecht University) Members: Prof. dr. J.E. Degener (Member of the Medical Veterinary subcommittee of COGEM, University Medical Centre Groningen) Prof. dr. ir. J.D. van Elsas (Member of the Agriculture subcommittee of COGEM, University of Groningen) Dr. Lisette van der Knaap (COGEM-secretariat) Astrid Schulting (COGEM-secretariat) Disclaimer This report was commissioned by COGEM. The contents of this publication are the sole responsibility of the authors and may in no way be taken to represent the views of COGEM. Dit rapport is samengesteld in opdracht van de COGEM. De meningen die in het rapport worden weergegeven, zijn die van de auteurs en weerspiegelen niet noodzakelijkerwijs de mening van de COGEM. 2 | 24 Foreword COGEM advises the Dutch government on classifications of bacteria, and publishes listings of pathogenic and non-pathogenic bacteria that are updated regularly. These lists of bacteria originate from 2011, when COGEM petitioned a research project to evaluate the classifications of bacteria in the former GMO regulation and to supplement this list with bacteria that have been classified by other governmental organizations. -
Bioinformática Desarrollo, Implementación Y Optimización De
Universidad de la Republica´ PEDECIBA - Bioinformatica´ Tesis de Maestr´ıa Desarrollo, implementaci´ony optimizaci´onde herramientas de gen´omicacomparativa para el g´enero Leptospira Ignacio Ferr´es Tutor Dr. Gregorio Iraola Co-tutor Dr. Hugo Naya 18 de marzo de 2019 (...) welcome to the machine. Where have you been? It's alright we know where you've been. You've been in the pipeline, filling in time. | Roger Waters Agradecimientos A la ANII, por apoyar mi investigaci´on. Al tribunal, Jos´e,Laura, y Alejandro, por sus valiosos aportes. A Hugo por permitirme realizar mis estudios de posgrado en la Unidad de Bio- inform´atica. A los compa~neros del Laboratorio de Gen´omicaMicrobiana, especialmente a Gre- gorio por guiarme en todo este proceso, valorar en todo momento mi esfuerzo, y permitirme ser parte de su equipo. A toda la Unidad de Bioinform´atica, en general, por el apoyo recibido siempre, el inmejorable y siempre c´alidoambiente laboral, y las instancias de formaci´onreci- bidas. A Cecilia, Leticia y Alejandro, por permitirme investigar con datos que iba ge- nerando su laboratorio. A los amigos, de la facultad y del liceo, que siempre estuvieron. A familia, siempre atr´as. Gracias. 2 Resumen La leptospirosis es una enfermedad zoon´onicacon alta prevalencia en pa´ısestropicales de bajos ingresos provocada por bacterias del g´ene- ro Leptospira. Gracias a los avances en secuenciaci´on,en lo ´ultimosa~nos las bases de datos gen´omicoshan crecido exponencialmente, y con ellas el n´umerode genomas secuenciados de cepas del g´enero,lo cual ha per- mitido un entendimiento m´asprofundo de este grupo de bacterias. -
The Magnitude and Diversity of Infectious Diseases
Chapter 1 The Magnitude and Diversity of Infectious Diseases “All interest in disease and death is only another expression of interest in life.” Thomas Mann THE IMPORTANCE OF INFECTIOUS DISEASES IN TERMS OF HUMAN MORTALITY According to the U.S. Census Bureau, on July 20, 2011, the USA population was 311 806 379, and the world population was 6 950 195 831 [2]. The U.S. Central Intelligence agency estimates that the USA crude death rate is 8.36 per 1000 and the world crude death rate is 8.12 per 1000 [3]. This translates to 2.6 million people dying in 2011 in the USA, and 56.4 million people dying worldwide. These numbers, calculated from authoritative sources, correlate surprisingly well with the widely used rule of thumb that 1% of the human population dies each year. How many of the world’s 56.4 million deaths can be attributed to infectious diseases? According to World Health Organization, in 1996, when the global death toll was 52 million, “Infectious diseases remain the world’s leading cause of death, accounting for at least 17 million (about 33%) of the 52 million people who die each year” [4]. Of course, only a small fraction of infections result in death, and it is impossible to determine the total incidence of infec- tious diseases that occur each year, for all organisms combined. Still, it is useful to consider some of the damage inflicted by just a few of the organisms that infect humans. Malaria infects 500 million people. About 2 million people die each year from malaria [4]. -
Tatiana Rodrigues Fraga Identificação De Proteases
TATIANA RODRIGUES FRAGA IDENTIFICAÇÃO DE PROTEASES DE LEPTOSPIRA ENVOLVIDAS COM MECANISMOS DE ESCAPE DO SISTEMA COMPLEMENTO HUMANO Tese apresentada ao Programa de Pós‐Graduação em Imunologia do Instituto de Ciências Biomédicas da Universidade de São Paulo, para obtenção do Título de Doutor em Ciências. Área de concentração: Imunologia Orientadora: Profa. Dra. Lourdes Isaac Co-orientadora: Profa. Dra. Angela Silva Barbosa Versão original São Paulo 2014 RESUMO Fraga TR. Identificação de proteases de leptospira envolvidas com mecanismos de escape do sistema complemento humano. [tese (Doutorado em Imunologia)]. São Paulo: Instituto de Ciências Biomédicas, Universidade de São Paulo; 2014. A leptospirose é uma zoonose mundialmente disseminada que representa um grave problema de saúde pública. Microrganismos patogênicos, notadamente os que atingem a circulação sanguínea como a leptospira, desenvolveram múltiplas estratégias de evasão ao sistema imune do hospedeiro, em especial ao sistema complemento. Neste contexto, o principal objetivo deste trabalho foi analisar a secreção de proteases capazes de clivar moléculas do sistema complemento por leptospiras patogênicas, o que constituiria um novo mecanismo de evasão imune para este patógeno. Nove estirpes de leptospira foram selecionadas para este trabalho: sete patogênicas e duas saprófitas. Para a obtenção dos sobrenadantes de cultura, bactérias cultivadas em meio EMJH modificado foram transferidas para PBS pH 7,4 e incubadas a 37 oC por diferentes tempos. Após incubação, os sobrenadantes foram coletados e analisados quanto à atividade inibitória e proteolítica sobre componentes do sistema complemento. O efeito sobre a ativação do complemento foi quantificado por ELISA, onde a atividade das três vias foi medida separadamente. Verificamos que o sobrenadante de leptospiras patogênicas foi capaz de inibir a ativação de todas as vias do complemento, enquanto o da espécie saprófita não inibiu nenhuma delas. -
International Committee on Systematic Bacteriology Subcommittee on the Taxonomy of Leptospira Minutes of the Meetings, 13 and 15 September 1990, Osaka, Japan
INTERNATIONAL JOURNAL OF SYSTEMATICBACTERIOLOGY, Apr. 1992, p. 330-334 Vol. 42, No. 2 0020-7713/92/020330-05$02.00/0 Copyright 0 1992, International Union of Microbiological Societies International Committee on Systematic Bacteriology Subcommittee on the Taxonomy of Leptospira Minutes of the Meetings, 13 and 15 September 1990, Osaka, Japan Minute 1. Call to order. The meeting was called to order reference laboratories maintain a full collection of serovars, by the Chairman, E. Kmety, at 1300 on 13 September 1990. and (v) production and distribution of monoclonal antibod- The opening consisted of a welcoming introduction. Follow- ies. ing this there were additional open sessions at 1800 on 13 Minute 9. General aspects of taxonomy. E. Kmety pre- September and at 0900 on 15 September. A closed session sented a paper on general aspects of taxonomy. He spoke of was held at 1300 on 15 September. early attempts at a phylogenetic classification and also of Minute 2. Record of attendance. The members present problems in the use of DNA base composition for compari- were E. Kmety (Chairman), R. Yanagawa (Vice-chairman), son purposes. Following this he discussed problems with N. Stallman (Secretary), M. Cinco, H. Dikken, W. Ellis, S. using DNA hybridization. It was stated that some microbi- Faine, R. Johnson, R. Marshall, and W. Terpstra. In addi- ologists have considered the possibility of having two clas- tion to members of the subcommittee, the following individ- sification systems, one phylogenetic and the other practical. uals attended one or more of the open sessions: B. Adler, A. Comments were then made on a report submitted by the Alexander, B. -
High Diversity of Leptospira Species Infecting Bats Captured in the Urabá Region (Antioquia-Colombia)
microorganisms Article High Diversity of Leptospira Species Infecting Bats Captured in the Urabá Region (Antioquia-Colombia) Fernando P. Monroy 1,* , Sergio Solari 2, Juan Álvaro Lopez 3, Piedad Agudelo-Flórez 4 and Ronald Guillermo Peláez Sánchez 4 1 Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ 86011, USA 2 Institute of Biology, University of Antioquia, Medellín 50010, Colombia; [email protected] 3 Microbiology School, Primary Immunodeficiencies Group, University of Antioquia, Medellín 50010, Colombia; [email protected] 4 Basic Science Research Group, Graduate School—CES University, Medellín 50021, Colombia; [email protected] (P.A.-F.); [email protected] (R.G.P.S.) * Correspondence: [email protected]; Tel.: +1-928-523-0042 Abstract: Leptospirosis is a globally distributed zoonotic disease caused by pathogenic bacteria of the genus Leptospira. This zoonotic disease affects humans, domestic animals and wild animals. Colombia is considered an endemic country for leptospirosis; Antioquia is the second department in Colombia, with the highest number of reported leptospirosis cases. Currently, many studies report bats as reservoirs of Leptospira spp. but the prevalence in these mammals is unknown. The goal of this study was to better understand the role of bats as reservoir hosts of Leptospira species and to evaluate the genetic diversity of circulating Leptospira species in Antioquia-Colombia. We captured 206 bats in the municipalities of Chigorodó (43 bats), Carepa (43 bats), Apartadó (39 bats), Turbo (40 bats), Citation: Monroy, F.P.; Solari, S.; and Necoclí (41 bats) in the Urabá region (Antioquia-Colombia). Twenty bats tested positive for Lopez, J.Á.; Agudelo-Flórez, P.; Leptospira spp. -
I PREVALENCE and RISK FACTORS of LEPTOSPIRA and BRUCELLA
PREVALENCE AND RISK FACTORS OF LEPTOSPIRA AND BRUCELLA INFECTION IN STABLED HORSES IN KADUNA METROPOLIS, KADUNA STATE, NIGERIA BY Edith Chinyere NWOKIKE DEPARTMENT OF VETERINARY PUBLIC HEALTH AND PREVENTIVE MEDICINE, FACULTY OF VETERINARY MEDICINE, AHMADU BELLO UNIVERSITY, ZARIA, NIGERIA SEPTEMBER, 2014 i PREVALENCE AND RISK FACTORS OF LEPTOSPIRA AND BRUCELLA INFECTION IN STABLED HORSES IN KADUNA METROPOLIS, KADUNA STATE, NIGERIA BY Edith Chinyere NWOKIKE (M.Sc/Vet. Med/04123/2010-2011) A THESIS SUBMITTED TO THE SCHOOL OF POSTGRADUATE STUDIES, AHMADU BELLO UNIVERSITY, ZARIA, NIGERIA IN PARTIAL FULFILMENT FOR THE AWARD OF MASTER OF SCIENCE IN VETERINARY PUBLIC HEALTH AND PREVENTIVE MEDICINE, AHMADU BELLO UNIVERSITY ZARIA, NIGERIA SEPTEMBER, 2014 ii DECLARATION I hereby declare that the work in this thesis titled ―PREVALENCE AND RISK FACTORS OF LEPTOSPIRA AND BRUCELLA INFECTION IN STABLED HORSES IN KADUNA METROPOLIS, KADUNA STATE, NIGERIA‖ has been performed by me in the Department of Public Health and Preventive Medicine under the supervision of Professor J. U. Umoh and Professor L. B. Tekdek. The information derived from the literature has been duly acknowledged in the text and a list of references provided. No part of this thesis was previously presented for another degree at any university. NWOKIKE EDITH CHINYERE Name of student Signature Date iii CERTIFICATION This thesis titled ―PREVALENCE AND RISK FACTORS OF LEPTOSPIRA AND BRUCELLA INFECTION IN STABLED HORSES IN KADUNA METROPOLIS, KADUNA STATE,NIGERIA‖ by NWOKIKE EDITH CHINYERE meets the regulations governing the award of the degree of Master of Science, in Veterinary Public Health and Preventive Medicine of Ahmadu Bello University and is approved for its contribution to knowledge and literary presentation.