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Unix Introduction
Unix introduction Mikhail Dozmorov Summer 2018 Mikhail Dozmorov Unix introduction Summer 2018 1 / 37 What is Unix Unix is a family of operating systems and environments that exploits the power of linguistic abstractions to perform tasks Unix is not an acronym; it is a pun on “Multics”. Multics was a large multi-user operating system that was being developed at Bell Labs shortly before Unix was created in the early ’70s. Brian Kernighan is credited with the name. All computational genomics is done in Unix http://www.read.seas.harvard.edu/~kohler/class/aosref/ritchie84evolution.pdfMikhail Dozmorov Unix introduction Summer 2018 2 / 37 History of Unix Initial file system, command interpreter (shell), and process management started by Ken Thompson File system and further development from Dennis Ritchie, as well as Doug McIlroy and Joe Ossanna Vast array of simple, dependable tools that each do one simple task Ken Thompson (sitting) and Dennis Ritchie working together at a PDP-11 Mikhail Dozmorov Unix introduction Summer 2018 3 / 37 Philosophy of Unix Vast array of simple, dependable tools Each do one simple task, and do it really well By combining these tools, one can conduct rather sophisticated analyses The Linux help philosophy: “RTFM” (Read the Fine Manual) Mikhail Dozmorov Unix introduction Summer 2018 4 / 37 Know your Unix Unix users spend a lot of time at the command line In Unix, a word is worth a thousand mouse clicks Mikhail Dozmorov Unix introduction Summer 2018 5 / 37 Unix systems Three common types of laptop/desktop operating systems: Windows, Mac, Linux. Mac and Linux are both Unix-like! What that means for us: Unix-like operating systems are equipped with “shells”" that provide a command line user interface. -
Beginning Portable Shell Scripting from Novice to Professional
Beginning Portable Shell Scripting From Novice to Professional Peter Seebach 10436fmfinal 1 10/23/08 10:40:24 PM Beginning Portable Shell Scripting: From Novice to Professional Copyright © 2008 by Peter Seebach All rights reserved. No part of this work may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or by any information storage or retrieval system, without the prior written permission of the copyright owner and the publisher. ISBN-13 (pbk): 978-1-4302-1043-6 ISBN-10 (pbk): 1-4302-1043-5 ISBN-13 (electronic): 978-1-4302-1044-3 ISBN-10 (electronic): 1-4302-1044-3 Printed and bound in the United States of America 9 8 7 6 5 4 3 2 1 Trademarked names may appear in this book. Rather than use a trademark symbol with every occurrence of a trademarked name, we use the names only in an editorial fashion and to the benefit of the trademark owner, with no intention of infringement of the trademark. Lead Editor: Frank Pohlmann Technical Reviewer: Gary V. Vaughan Editorial Board: Clay Andres, Steve Anglin, Ewan Buckingham, Tony Campbell, Gary Cornell, Jonathan Gennick, Michelle Lowman, Matthew Moodie, Jeffrey Pepper, Frank Pohlmann, Ben Renow-Clarke, Dominic Shakeshaft, Matt Wade, Tom Welsh Project Manager: Richard Dal Porto Copy Editor: Kim Benbow Associate Production Director: Kari Brooks-Copony Production Editor: Katie Stence Compositor: Linda Weidemann, Wolf Creek Press Proofreader: Dan Shaw Indexer: Broccoli Information Management Cover Designer: Kurt Krames Manufacturing Director: Tom Debolski Distributed to the book trade worldwide by Springer-Verlag New York, Inc., 233 Spring Street, 6th Floor, New York, NY 10013. -
Introduction to Unix
Introduction to Unix Rob Funk <[email protected]> University Technology Services Workstation Support http://wks.uts.ohio-state.edu/ University Technology Services Course Objectives • basic background in Unix structure • knowledge of getting started • directory navigation and control • file maintenance and display commands • shells • Unix features • text processing University Technology Services Course Objectives Useful commands • working with files • system resources • printing • vi editor University Technology Services In the Introduction to UNIX document 3 • shell programming • Unix command summary tables • short Unix bibliography (also see web site) We will not, however, be covering these topics in the lecture. Numbers on slides indicate page number in book. University Technology Services History of Unix 7–8 1960s multics project (MIT, GE, AT&T) 1970s AT&T Bell Labs 1970s/80s UC Berkeley 1980s DOS imitated many Unix ideas Commercial Unix fragmentation GNU Project 1990s Linux now Unix is widespread and available from many sources, both free and commercial University Technology Services Unix Systems 7–8 SunOS/Solaris Sun Microsystems Digital Unix (Tru64) Digital/Compaq HP-UX Hewlett Packard Irix SGI UNICOS Cray NetBSD, FreeBSD UC Berkeley / the Net Linux Linus Torvalds / the Net University Technology Services Unix Philosophy • Multiuser / Multitasking • Toolbox approach • Flexibility / Freedom • Conciseness • Everything is a file • File system has places, processes have life • Designed by programmers for programmers University Technology Services -
“Linux at the Command Line” Don Johnson of BU IS&T We’Ll Start with a Sign in Sheet
“Linux at the Command Line” Don Johnson of BU IS&T We’ll start with a sign in sheet. We’ll end with a class evaluation. We’ll cover as much as we can in the time allowed; if we don’t cover everything, you’ll pick it up as you continue working with Linux. This is a hands-on, lab class; ask questions at any time. Commands for you to type are in BOLD The Most Common O/S Used By BU Researchers When Working on a Server or Computer Cluster Linux is a Unix clone begun in 1991 and written from scratch by Linus Torvalds with assistance from a loosely-knit team of hackers across the Net. 64% of the world’s servers run some variant of Unix or Linux. The Android phone and the Kindle run Linux. a set of small Linux is an O/S core programs written by written by Linus Richard Stallman and Torvalds and others others. They are the AND GNU utilities. http://www.gnu.org/ Network: ssh, scp Shells: BASH, TCSH, clear, history, chsh, echo, set, setenv, xargs System Information: w, whoami, man, info, which, free, echo, date, cal, df, free Command Information: man, info Symbols: |, >, >>, <, ;, ~, ., .. Filters: grep, egrep, more, less, head, tail Hotkeys: <ctrl><c>, <ctrl><d> File System: ls, mkdir, cd, pwd, mv, touch, file, find, diff, cmp, du, chmod, find File Editors: gedit, nedit You need a “xterm” emulation – software that emulates an “X” terminal and that connects using the “SSH” Secure Shell protocol. ◦ Windows Use StarNet “X-Win32:” http://www.bu.edu/tech/support/desktop/ distribution/xwindows/xwin32/ ◦ Mac OS X “Terminal” is already installed Why? Darwin, the system on which Apple's Mac OS X is built, is a derivative of 4.4BSD-Lite2 and FreeBSD. -
Your Performance Task Summary Explanation
Lab Report: 11.2.5 Manage Files Your Performance Your Score: 0 of 3 (0%) Pass Status: Not Passed Elapsed Time: 6 seconds Required Score: 100% Task Summary Actions you were required to perform: In Compress the D:\Graphics folderHide Details Set the Compressed attribute Apply the changes to all folders and files In Hide the D:\Finances folder In Set Read-only on filesHide Details Set read-only on 2017report.xlsx Set read-only on 2018report.xlsx Do not set read-only for the 2019report.xlsx file Explanation In this lab, your task is to complete the following: Compress the D:\Graphics folder and all of its contents. Hide the D:\Finances folder. Make the following files Read-only: D:\Finances\2017report.xlsx D:\Finances\2018report.xlsx Complete this lab as follows: 1. Compress a folder as follows: a. From the taskbar, open File Explorer. b. Maximize the window for easier viewing. c. In the left pane, expand This PC. d. Select Data (D:). e. Right-click Graphics and select Properties. f. On the General tab, select Advanced. g. Select Compress contents to save disk space. h. Click OK. i. Click OK. j. Make sure Apply changes to this folder, subfolders and files is selected. k. Click OK. 2. Hide a folder as follows: a. Right-click Finances and select Properties. b. Select Hidden. c. Click OK. 3. Set files to Read-only as follows: a. Double-click Finances to view its contents. b. Right-click 2017report.xlsx and select Properties. c. Select Read-only. d. Click OK. e. -
Powerview Command Reference
PowerView Command Reference TRACE32 Online Help TRACE32 Directory TRACE32 Index TRACE32 Documents ...................................................................................................................... PowerView User Interface ............................................................................................................ PowerView Command Reference .............................................................................................1 History ...................................................................................................................................... 12 ABORT ...................................................................................................................................... 13 ABORT Abort driver program 13 AREA ........................................................................................................................................ 14 AREA Message windows 14 AREA.CLEAR Clear area 15 AREA.CLOSE Close output file 15 AREA.Create Create or modify message area 16 AREA.Delete Delete message area 17 AREA.List Display a detailed list off all message areas 18 AREA.OPEN Open output file 20 AREA.PIPE Redirect area to stdout 21 AREA.RESet Reset areas 21 AREA.SAVE Save AREA window contents to file 21 AREA.Select Select area 22 AREA.STDERR Redirect area to stderr 23 AREA.STDOUT Redirect area to stdout 23 AREA.view Display message area in AREA window 24 AutoSTOre .............................................................................................................................. -
Shell Variables
Shell Using the command line Orna Agmon ladypine at vipe.technion.ac.il Haifux Shell – p. 1/55 TOC Various shells Customizing the shell getting help and information Combining simple and useful commands output redirection lists of commands job control environment variables Remote shell textual editors textual clients references Shell – p. 2/55 What is the shell? The shell is the wrapper around the system: a communication means between the user and the system The shell is the manner in which the user can interact with the system through the terminal. The shell is also a script interpreter. The simplest script is a bunch of shell commands. Shell scripts are used in order to boot the system. The user can also write and execute shell scripts. Shell – p. 3/55 Shell - which shell? There are several kinds of shells. For example, bash (Bourne Again Shell), csh, tcsh, zsh, ksh (Korn Shell). The most important shell is bash, since it is available on almost every free Unix system. The Linux system scripts use bash. The default shell for the user is set in the /etc/passwd file. Here is a line out of this file for example: dana:x:500:500:Dana,,,:/home/dana:/bin/bash This line means that user dana uses bash (located on the system at /bin/bash) as her default shell. Shell – p. 4/55 Starting to work in another shell If Dana wishes to temporarily use another shell, she can simply call this shell from the command line: [dana@granada ˜]$ bash dana@granada:˜$ #In bash now dana@granada:˜$ exit [dana@granada ˜]$ bash dana@granada:˜$ #In bash now, going to hit ctrl D dana@granada:˜$ exit [dana@granada ˜]$ #In original shell now Shell – p. -
Doing More in UNIX HORT 59000 Lab 3 Instructor: Kranthi Varala Today’S Pairs
Doing more in UNIX HORT 59000 Lab 3 Instructor: Kranthi Varala Today’s pairs Pair #1 Pair #2 Pair #3 Pair #4 Pair #5 Pair #6 Pair #7 Pair #8 Aishwarya, Habte, Chancellor, Rachel F., Rachel H., Michelle, Raquel, Katherine, Shawna Xiaojin Thiti Sara AuditorX Jay Courtney Hannah If your partner is missing, let me know and we’ll adjust the pairs based on availability. Quiz 2 • Open-book policy: You are free to look at all the slides from previous Lectures and labs. • No internet searches for answers. • No talking to others. • You have 20 minutes to complete the quiz. Creating pipelines from commands • The STDIN and STDOUT of each command can be redirected to combine programs together. • For example, the STDOUT of one program can be sent to the STDIN of another program. • STDIN and STDOUT streams can be redirected using the following symbols: 1. > 2. < 3. | Writing vs. Appending to a file $ cat Pasture.txt > Poems.txt Send the contents of Pasture.txt to a new file called Poems.txt. If Poems.txt exists, its contents are over- written. $ cat WoodPile.txt >> Poems.txt Add the contents of WoodPile.txt to the end of the existing file Poems.txt. If Poems.txt does not exist, it will be created. Exercises UNIX commands wget and nano • Search NCBI’s GEO website for the experiment GSE49418. • Find the FTP link for the series matrix file. • Copy the link to the GSE49418_series_matrix.txt.gz file. • Use wget to download the matrix file to a new directory in your scratch folder. -
LPI 101 – Work on the Command Line [5] (Linux Professional Institute Certification) A
– LPI 101 – Work on the Command Line [5] (Linux Professional Institute Certification) a .˜. /V\ by: geoffrey robertson // \\ [email protected] @._.@ $Id: gl1.103.1.slides.tex,v 1.3 2003/05/30 05:09:04 waratah Exp $ a c Copyright 2002 Geoffrey Robertson, Andrew Eager. Permission is granted to make and distribute verbatim copies or modified versions of this document provided that this copyright notice and this permission notice are preserved on all copies under the terms of the GNU General Public License as published by the Free Software Foundation—either version 2 of the License or (at your option) any later version. 1 Work on the command line [5] Objective Candidate should be able to interact with shells and commands using the command line. This includes typing valid commands and command sequences, defining, referencing and exporting environment variables, using command history and editing facilities, invoking commands in the path and outside the path, using command substitution, applying commands recursively through a directory tree and using man to find about commands. 2 Work on the command line [5] Key files, terms, and utilities ¡ . ¡ man ¡ bash ¡ pwd ¡ echo ¡ set ¡ env ¡ unset ¡ ¡ exec ˜/.bash history ¡ ¡ export ˜/.profile 3 Work on the command line [5] Resources of interest LPI Certification in a Nutshell pp15—19 LPIC 1 Cert. Bible Chapter 2 Linux Shells by Example by Ellie Quigley 4 Shells Command Line Interface ¡ A shell is the program that provides a Command Line Interface to the operating system. 5 Shells may be accessed in various ways: – Virtual Console – Terminal attached to a serial line – Remote access over tcp/ip with telnet, rsh or ssh – An X terminal run on an X session, either on the local console or remotely See /etc/inittab Shells Command Line Interface ¡ A shell is the program that provides a Command Line Interface to the operating system. -
Ardpower Documentation Release V1.2.0
ardPower Documentation Release v1.2.0 Anirban Roy Das Sep 27, 2017 Contents 1 Introduction 1 2 Screenshot 3 3 Documentaion 5 3.1 Overview.................................................5 3.2 Installation................................................7 3.3 Usage................................................... 12 4 Indices and tables 13 i ii CHAPTER 1 Introduction Its a custom Oh-My-Zsh Theme inspired by many custom themes suited for a perfect ZSH Environment under Byobu with Tmux Backend. 1 ardPower Documentation, Release v1.2.0 2 Chapter 1. Introduction 3 ardPower Documentation, Release v1.2.0 CHAPTER 2 Screenshot 4 Chapter 2. Screenshot CHAPTER 3 Documentaion You can also find PDF version of the documentation here. Overview We will start with understanding the individual components of an entire CLI. Generally we don’t put much attention to what we do. We just fire up a terminal or some say sheel and start typing our commands and get the result. That’s all. But there are a lot of things that goes behind all this. Terminal The very first component is the Terminal. So what is a Terminal? A terminal emulator, terminal application, term, or tty for short, is a program that emulates a video ter- minal within some other display architecture. Though typically synonymous with a shell or text terminal, the term terminal covers all remote terminals, including graphical interfaces. A terminal emulator inside a graphical user interface is often called a terminal window.A terminal window allows the user access to a text terminal and all its applications such as command-line interfaces (CLI) and text user interface (TUI) applications. -
UNIX X Command Tips and Tricks David B
SESUG Paper 122-2019 UNIX X Command Tips and Tricks David B. Horvath, MS, CCP ABSTRACT SAS® provides the ability to execute operating system level commands from within your SAS code – generically known as the “X Command”. This session explores the various commands, the advantages and disadvantages of each, and their alternatives. The focus is on UNIX/Linux but much of the same applies to Windows as well. Under SAS EG, any issued commands execute on the SAS engine, not necessarily on the PC. X %sysexec Call system Systask command Filename pipe &SYSRC Waitfor Alternatives will also be addressed – how to handle when NOXCMD is the default for your installation, saving results, and error checking. INTRODUCTION In this paper I will be covering some of the basics of the functionality within SAS that allows you to execute operating system commands from within your program. There are multiple ways you can do so – external to data steps, within data steps, and within macros. All of these, along with error checking, will be covered. RELEVANT OPTIONS Execution of any of the SAS System command execution commands depends on one option's setting: XCMD Enables the X command in SAS. Which can only be set at startup: options xcmd; ____ 30 WARNING 30-12: SAS option XCMD is valid only at startup of the SAS System. The SAS option is ignored. Unfortunately, ff NOXCMD is set at startup time, you're out of luck. Sorry! You might want to have a conversation with your system administrators to determine why and if you can get it changed. -
Unix Shell Programming – by Dinesh Kumar S
1 Unix Shell Programming – by Dinesh Kumar S PDF by http://www.k2pdf.com Contents Chapters Topic Page no. Chapter 1 Introduction 3 Chapter 2 SSH Client 4 Chapter 3 Unix Shells 8 Chapter 4 Text Editors 11 Chapter 5 A Beginning to Shell Scripting 19 Chapter 6 Operators 33 Chapter 7 Variables Manipulation (Advance) 39 Chapter 8 Conditional Statements 43 Chapter 9 Looping Statements 47 Chapter 10 Control Statements 74 Chapter 11 Functions 79 2 Unix Shell Programming – by Dinesh Kumar S Chapter 1 Introduction Linux : It is an operating system based on UNIX . Kernel : It is the backbone of Linux OS, which is used to manage resources of Linux OS like memory, I/O, software, hardware management processes. User Shell Script Kernel PC h/w User writes script. Script contains instructions. Kernel interprets the instruction in machine language. As per the instruction kernel controls the PC hardware. Shell script : It’s a collection of OS commands or instructions. Advantages of Shell Script : Script is always a platform independent. Performance will be faster than programming languages. Very easy to debug. 3 Unix Shell Programming – by Dinesh Kumar S Chapter 2 SSH Client Secure Shell (or) SSH is a network protocol that is used to exchange or share information between two different networks. This is used on Linux & UNIX systems to access SHELL accounts. All the information exchanged/transmitted between networks is encrypted . It uses public key cryptography to authenticate remote computer user. Free Serial, Telnet, and SSH client Putty Tera Term Putty : It is a terminal emulator application which acts as client for SSH, Telnet, rLogin.