High Expression of TOP2A Gene Predicted Poor Prognosis of Hepatocellular Carcinoma After Radical Hepatectomy
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The Influence of Cell Cycle Regulation on Chemotherapy
International Journal of Molecular Sciences Review The Influence of Cell Cycle Regulation on Chemotherapy Ying Sun 1, Yang Liu 1, Xiaoli Ma 2 and Hao Hu 1,* 1 Institute of Biomedical Materials and Engineering, College of Materials Science and Engineering, Qingdao University, Qingdao 266071, China; [email protected] (Y.S.); [email protected] (Y.L.) 2 Qingdao Institute of Measurement Technology, Qingdao 266000, China; [email protected] * Correspondence: [email protected] Abstract: Cell cycle regulation is orchestrated by a complex network of interactions between proteins, enzymes, cytokines, and cell cycle signaling pathways, and is vital for cell proliferation, growth, and repair. The occurrence, development, and metastasis of tumors are closely related to the cell cycle. Cell cycle regulation can be synergistic with chemotherapy in two aspects: inhibition or promotion. The sensitivity of tumor cells to chemotherapeutic drugs can be improved with the cooperation of cell cycle regulation strategies. This review presented the mechanism of the commonly used chemotherapeutic drugs and the effect of the cell cycle on tumorigenesis and development, and the interaction between chemotherapy and cell cycle regulation in cancer treatment was briefly introduced. The current collaborative strategies of chemotherapy and cell cycle regulation are discussed in detail. Finally, we outline the challenges and perspectives about the improvement of combination strategies for cancer therapy. Keywords: chemotherapy; cell cycle regulation; drug delivery systems; combination chemotherapy; cancer therapy Citation: Sun, Y.; Liu, Y.; Ma, X.; Hu, H. The Influence of Cell Cycle Regulation on Chemotherapy. Int. J. 1. Introduction Mol. Sci. 2021, 22, 6923. https:// Chemotherapy is currently one of the main methods of tumor treatment [1]. -
DNA Topoisomerase I and DNA Gyrase As Targets for TB Therapy, Drug Discov Today (2016), J.Drudis.2016.11.006
Drug Discovery Today Volume 00, Number 00 November 2016 REVIEWS GENE TO SCREEN DNA topoisomerase I and DNA gyrase as targets for TB therapy Reviews 1,2 1 3 Valakunja Nagaraja , Adwait A. Godbole , Sara R. Henderson and 3 Anthony Maxwell 1 Department of Microbiology and Cell Biology, Indian Institute of Science, Bangalore 560 012, India 2 Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore 560064, India 3 Department of Biological Chemistry, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK Tuberculosis (TB) is the deadliest bacterial disease in the world. New therapeutic agents are urgently needed to replace existing drugs for which resistance is a significant problem. DNA topoisomerases are well-validated targets for antimicrobial and anticancer chemotherapies. Although bacterial topoisomerase I has yet to be exploited as a target for clinical antibiotics, DNA gyrase has been extensively targeted, including the highly clinically successful fluoroquinolones, which have been utilized in TB therapy. Here, we review the exploitation of topoisomerases as antibacterial targets and summarize progress in developing new agents to target DNA topoisomerase I and DNA gyrase from Mycobacterium tuberculosis. Introduction provides for a certain degree of overlap in their functions. For Although the information content of DNA is essentially indepen- instance, in Escherichia coli, there are four topoisomerases: two dent of how the DNA is knotted or twisted, the access to this type I [topoisomerase (topo) I and topo III] and two type II (DNA information depends on the topology of the DNA. DNA topoi- gyrase and topo IV). In vitro, all four enzymes are capable of DNA somerases are ubiquitous enzymes that maintain the topological relaxation, whereas, in vivo, their roles tend to be more special- homeostasis within the cell during these DNA transaction pro- ized, for example, gyrase introduces negative supercoils, whereas cesses [1–3]. -
DNA Double-Strand Break Formation and Signalling in Response to Transcription-Blocking Topoisomerase I Complexes Agnese Cristini
DNA double-strand break formation and signalling in response to transcription-blocking topoisomerase I complexes Agnese Cristini To cite this version: Agnese Cristini. DNA double-strand break formation and signalling in response to transcription- blocking topoisomerase I complexes. Cancer. Université Paul Sabatier - Toulouse III, 2015. English. NNT : 2015TOU30276. tel-01878572 HAL Id: tel-01878572 https://tel.archives-ouvertes.fr/tel-01878572 Submitted on 21 Sep 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 5)µ4& &OWVFEFMPCUFOUJPOEV %0$503"5%&-6/*7&34*5²%&506-064& %ÏMJWSÏQBS Université Toulouse 3 Paul Sabatier (UT3 Paul Sabatier) 1SÏTFOUÏFFUTPVUFOVFQBS Agnese CRISTINI -F Vendredi 13 Novembre 5Jtre : DNA double-strand break formation and signalling in response to transcription-blocking topoisomerase I complexes ED BSB : Biotechnologies, Cancérologie 6OJUÏEFSFDIFSDIF UMR 1037 - CRCT - Equipe 3 "Rho GTPase in tumor progression" %JSFDUFVS T EFʾÒTF Dr. Olivier SORDET 3BQQPSUFVST Dr. Laurent CORCOS, Dr. Philippe PASERO, Dr. Philippe POURQUIER "VUSF T NFNCSF T EVKVSZ Dr. Patrick CALSOU (Examinateur) Pr. Gilles FAVRE (Président du jury) Ai miei genitori… …Grazie Merci aux Dr. Laurent Corcos, Dr. Philippe Pasero et Dr. Philippe Pourquier d’avoir accepté d’évaluer mon travail de thèse et d’avoir été présent pour ma soutenance. -
(12) Patent Application Publication (10) Pub. No.: US 2004/0009477 A1 Fernandez Et Al
US 20040009477A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2004/0009477 A1 Fernandez et al. (43) Pub. Date: Jan. 15, 2004 (54) METHODS FOR PRODUCING LIBRARIES ation of application No. 09/647,651, now abandoned, OF EXPRESSIBLE GENE SEQUENCES filed as 371 of international application No. PCT/ US99/07270, filed on Apr. 2, 1999, which is a con (75) Inventors: Joseph M. Fernandez, Carlsbad, CA tinuation-in-part of application No. 09/054,936, filed (US); John A. Heyman, Rixensart on Apr. 3, 1998, now abandoned. (BE); James P. Hoeffler, Anchorage, AK (US); Heather L. Marks-Hull, (30) Foreign Application Priority Data Oceanside, CA (US); Michelle L. Sindici, San Diego, CA (US) Apr. 2, 1999 (US)....................................... US99/07270 Correspondence Address: Publication Classification LISA A. HAILE, Ph.D. GRAY CARY WARE & FREDENRICH LLP 51)1) Int. Cl.Cl." .............................. C12O 1/68 ; C12P 19/34 Suite 1100 (52) U.S. Cl. ............................................... 435/6; 435/91.2 43.65 Executive Drive (57) ABSTRACT San Diego, CA 92.121-2133 (US) The present invention comprises a method for producing (73) Assignee: INVITROGEN CORPORATION libraries of expressible gene Sequences. The method of the invention allows for the Simultaneous manipulation of mul (21) Appl. No.: 09/990,091 tiple gene Sequences and thus allows libraries to be created in an efficient and high throughput manner. The expression (22) Filed: Nov. 21, 2001 vectors containing verified gene Sequences can be used to Related U.S. Application Data transfect cells for the production of recombinant proteins. The invention further comprises libraries of expressible gene (63) Continuation of application No. -
Acquisition and Loss of Amplified Genes 300 N. Zeeb Rd. Ann Arbor
Order Number 0201776 Acquisition and loss of amplified genes Wani, Maqsood Ahmad, Ph.D. The Ohio State University, 1991 UMI 300 N. Zeeb Rd. Ann Arbor, MI 48106 ACQUISITION AND LOSS OF AMPLIFIED GENES DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in the Graduate School of The Ohio State University by Maqsood Ahmad Wani, B.S., B.V.S., M.V.S. The Ohio State University 1991 Dissertation Committee: Approved by Robert M. Snapka, Ph.D. s i a I s ' Marshall Williams, Ph.D. Deborah S. Parris, Ph.D. Advisor Steven D. Ambrosio, Ph,D. Department of Medical Microbiology & Immunology Copyright by Maqsood Ahmad Wani 1991 To my Family, Friends and Teachers ii ACKNOWLEDGEMENTS It gives me great pleasure to express my sincere gratitude to my principal advisor, Robert M. Snapka, Ph.D., who provided me an opportunity to undertake my graduate education under his supervision. His countless efforts, valuable scientific planning, critical evaluation, constructive criticism are greatly acknowledged. I highly appreciate his support and understanding attitude. Sincere gratitude is also due to Steven M. D’Ambrosio, Ph.D. for his friendliness and consistent help; Deborah Parris, Ph.D. and Marshall Williams, Ph.D. for their valuable instruction, encouragement and enthusiam. I appreciate all the whole hearted help rendered from by John M. Strayer, Cha- gyun Shin, Paskasari Perm ana, Grant Marquit, Steve Santangelo, Bassem Hassan, Susan Baird, Paul Kelner and Marie Powelson. Over my five years at this university I was fortunate enough to live with my family, Altaf A. -
Topoisomerase IV, Not Gyrase, Decatenates Products of Site-Specific Recombination in Escherichia Coli
Downloaded from genesdev.cshlp.org on October 3, 2021 - Published by Cold Spring Harbor Laboratory Press Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli E. Lynn Zechiedrich,1,3 Arkady B. Khodursky,2 and Nicholas R. Cozzarelli1,4 1Department of Molecular and Cell Biology and 2Graduate Group in Biophysics, University of California, Berkeley, California 94720-3204 USA DNA replication and recombination generate intertwined DNA intermediates that must be decatenated for chromosome segregation to occur. We showed recently that topoisomerase IV (topo IV) is the only important decatenase of DNA replication intermediates in bacteria. Earlier results, however, indicated that DNA gyrase has the primary role in unlinking the catenated products of site-specific recombination. To address this discordance, we constructed a set of isogenic strains that enabled us to inhibit selectively with the quinolone norfloxacin topo IV, gyrase, both enzymes, or neither enzyme in vivo. We obtained identical results for the decatenation of the products of two different site-specific recombination enzymes, phage l integrase and transposon Tn3 resolvase. Norfloxacin blocked decatenation in wild-type strains, but had no effect in strains with drug-resistance mutations in both gyrase and topo IV. When topo IV alone was inhibited, decatenation was almost completely blocked. If gyrase alone were inhibited, most of the catenanes were unlinked. We showed that topo IV is the primary decatenase in vivo and that this function is dependent on the level of DNA supercoiling. We conclude that the role of gyrase in decatenation is to introduce negative supercoils into DNA, which makes better substrates for topo IV. -
Mapping Topoisomerase IV Binding and Activity Sites on the E. Coli Genome Hafez El Sayyed
Mapping Topoisomerase IV Binding and Activity Sites on the E. coli genome Hafez El Sayyed To cite this version: Hafez El Sayyed. Mapping Topoisomerase IV Binding and Activity Sites on the E. coli genome. Biochemistry, Molecular Biology. Université Paris-Saclay, 2016. English. NNT : 2016SACLS362. tel-01591487 HAL Id: tel-01591487 https://tel.archives-ouvertes.fr/tel-01591487 Submitted on 21 Sep 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT : 2016SACLS362 THESE DE DOCTORAT DE L’UNIVERSITE PARIS-SACLAY PREPAREE A L’UNIVERSITE PARIS-SUD AU SEIN DU CENTRE INTERDISCIPLINAIRE DE RECHERCHE EN BIOLOGIE ECOLE DOCTORALE N° 577 Structure et dynamique des systèmes vivants (SDSV) Spécialité de doctorat : Science de la vie et de la santé Par M. Hafez El Sayyed Mapping Topoisomerase IV Binding and Activity on the E. coli genome Thèse présentée et soutenue au Collège de France, le 26 Octobre 2016 Composition du Jury : M. Confalonieri, Fabrice Pr. I2BC, Orsay, France Président Mme Lamour, Valérie Dr. IGBMC, Illkirch, France Rapporteur M. Nollmann, Marcelo Dr. Centre de Biochimie Structurale, Montpellier Rapporteur M. Koszul, Romain Dr. Institut Pasteur, France Examinateur Mme Sclavi, Bianca DR. -
Direct Observation of Topoisomerase IA Gate Dynamics Maria Mills1, Yuk-Ching Tse-Dinh2,3, & Keir C
bioRxiv preprint doi: https://doi.org/10.1101/356659; this version posted June 27, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license. Direct Observation of Topoisomerase IA Gate Dynamics Maria Mills1, Yuk-Ching Tse-Dinh2,3, & Keir C. Neuman1* 1 Laboratory of Single Molecule Biophysics, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, USA 2 Biomolecular Sciences Institute, Florida International University, Miami, Florida 33199, USA 3 Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, USA * Corresponding author. Email: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/356659; this version posted June 27, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license. Abstract Type IA topoisomerases cleave single-stranded DNA and relieve negative supercoils in discrete steps corresponding to the passage of the intact DNA strand through the cleaved strand. Although it is assumed type IA topoisomerases accomplish this strand passage via a protein-mediated DNA gate, opening of this gate has never been observed. We developed a single-molecule assay to directly measure gate opening of the E. coli type IA topoisomerases I and III. -
Clomg and PARTIAL CWCTERLZA'tton of the 5'- Flanking REGION of the HUMAN TOPOISOMERASE IIP GENE
CLOmG AND PARTIAL CWCTERLZA'TTON OF THE 5'- FLANKiNG REGION OF THE HUMAN TOPOISOMERASE IIP GENE Nichohs R. Jones A thesis subrnitted in conforrnity with the requirements for the Degree of Master of Science, Department of Pbarmacology, University of Toronto. O Copyright by Nicholas R. Jones 1997 National Library Bibliothèque nationale H*D of Canada du Canada Acquisitions and Acquisitions et Bibliographie Services services bibliographiques 395 Wellington Street 395, nie Wellington OttawaON KlAON4 OttawaON K1AON4 Canada Canada Your CC Votre refarenas Our iUe Notre reUrtma The author has granted a non- L'auteur a accordé une licence non exclusive licence allowing the exclusive permettant à la National Library of Canada to Bibliothèque nationale du Canada de reproduce, loan, distribute or sell reproduire, prêter, distribuer ou copies of this thesis in microfonn, vendre des copies de cette thèse sous paper or electronic formats. la forme de microfiche/nlm, de reproduction sur papier ou sur format électronique. The author retains ownership of the L'auteur conserve la propriété du copyright in this thesis. Neither the droit d'auteur qui protège cette thèse. thesis nor substantial extracts fiom it Ni la thèse ni des extraits substantiels may be p~tedor otherwise de celle-ci ne doivent être imprimés reproduced without the author's ou autrement reproduits sans son permission. autorisation. CLOMNG AND PARTIAL CHARACTERIZATION OF THE 5'- FLANKJNG REGION OF THE HUMAN TOPOISOMERASE np GENE Nicholas R. Jones A thesis submitted in conformit. with the requirernents for the Degree of Master of Science, Department of Pharmacology, University of Toronto. O Copyright by Nicholas R. -
Mechanistic Characterization of the Mitochondrial Type I DNA Topoisomerase and a Study of Genes Containing Type I DNA Topoisomerase-Related Domains
Old Dominion University ODU Digital Commons Theses and Dissertations in Biomedical Sciences College of Sciences Summer 2000 Mechanistic Characterization of the Mitochondrial Type I DNA Topoisomerase and a Study of Genes Containing Type I DNA Topoisomerase-Related Domains Jaydee Dones Cabral Old Dominion University Follow this and additional works at: https://digitalcommons.odu.edu/biomedicalsciences_etds Part of the Biochemistry Commons Recommended Citation Cabral, Jaydee D.. "Mechanistic Characterization of the Mitochondrial Type I DNA Topoisomerase and a Study of Genes Containing Type I DNA Topoisomerase-Related Domains" (2000). Doctor of Philosophy (PhD), Dissertation, , Old Dominion University, DOI: 10.25777/fjx3-kb57 https://digitalcommons.odu.edu/biomedicalsciences_etds/11 This Dissertation is brought to you for free and open access by the College of Sciences at ODU Digital Commons. It has been accepted for inclusion in Theses and Dissertations in Biomedical Sciences by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. MECHANISTIC CHARACTERIZATION OF THE MITOCHONDRIAL TYPE IDNA TOPOISOMERASE AND A STUDY OF GENES CONTAINING TYPE I DNA TOPOISOMERASE-RELATED DOMAINS by Jaydee Dones Cabral B.S. May 1994, College of William and Mary M.A August 1995, College of William and Mary A Dissertation Submitted to the Faculty of Old Dominion University and Eastern Virginia Medical School in Partial Fulfillment of the Requirement for the Degree of DOCTOR OF PHILOSOPHY BIOMEDICAL SCIENCES OLD DOMINION UNIVERSITY and EASTERN VIRGINIA MEDICAL SCHOOL August 2000 Approve^b Frank J. Cetera (Director) Mark S. Elliott (Member) William Wasilenko (Member) Howard u. wtnte (Memoer) Reproduced with permission of the copyright owner. -
Association of DNA Topoisomerase I and RNA Polymerase I: a Possible Role for Topoisomerase I in Ribosomal Gene Transcription
Chromosoma (Berl) (1988) 96 :411-416 Association of DNA topoisomerase I and RNA polymerase I: a possible role for topoisomerase I in ribosomal gene transcription Kathleen M. Rose 1, J an Szopa 1, Fu-Sheng Han 2, Yung-Chi Cheng 2, Arndt Richter \ and Ulrich Scheer 4 I Department of Pharmacology, Medical School, University of Texas Health Science Center, Houston, TX 77225, USA 2 Department of Pharmacology, University of North Carolina School of Medicine, Chapel Hill, NC 27514, USA 3 Fakultiit fUr Biologie, Universitiit Konstanz, 0-7750 Konstanz, Federal Republic of Germany 4 Institute of Zoology I, University of Wiirzburg, Rontgenring 10, 0-8700 Wiirzburg, Federal Republic of Germany Abstract. RNA polymerase I preparations purified from a is located at DNase I hypersensitive sites in the nontran rat hepatoma contained DNA topoisomerase activity. The scribed rDNA spacer region (Bonven et al. 1985). In vitro DNA topoisomerase associated with the polymerase had the activity of topoisomerase I is inhibited by polyADP an Mr of 110000, required Mg2+ but not ATP, and was ribosylation (Jonstra-Bilen et al. 1983; Ferro and Olivers recognized by anti-topoisomerase I antibodies. When added 1984). Conversely, the activity is stimulated when the en to RNA polymerase I preparations containing topoisomer zyme is phosphorylated by casein kinase IT (Durban et al. ase activity, anti-topoisomerase I antibodies were able to 1985). inhibit the DNA relaxing activity of the preparation as well The DNA-dependent enzyme, RNA polymerase I, is re as RNA synthesis in vitro. RNA polymerase II prepared sponsible for the transcription of ribosomal genes (for re by analogous procedures did not contain topoisomerase ac views see Roeder 1976 ; Jacob and Rose 1978). -
Roles of DNA Topoisomerases in Chromosome Segregation and Mitosis
Mutation Research 543 (2003) 59–66 Review Roles of DNA topoisomerases in chromosome segregation and mitosis Felipe Cortés∗, Nuria Pastor, Santiago Mateos, Inmaculada Dom´ınguez Department of Cell Biology, Faculty of Biology, University of Seville, Avda. Reina Mercedes #6, E-41012 Seville, Spain Received 23 July 2002; accepted 27 September 2002 Abstract DNA topoisomerases are highly specialized nuclear enzymes that perform topological changes in the DNA molecule in a very precise and unique fashion. Taking into account their fundamental roles in many events during DNA metabolism such as replication, transcription, recombination, condensation or segregation, it is no wonder that the last decade has witnessed an exponential interest on topoisomerases, mainly after the discovery of their potential role as targets in novel antitumor therapy. The difficulty of the lack of topoisomerase II mutants in higher eukaryotes has been partly overcome by the availability of drugs that act as either poisons or true catalytic inhibitors of the enzyme. These chemical tools have provided strong evidence that accurate performance of topoisomerase II is essential for chromosome segregation before anaphase, and this in turn constitutes a prerequisite for the development of normal mitosis. In the absence of cytokinesis, cells become polyploid or endoreduplicated. © 2002 Elsevier Science B.V. All rights reserved. Keywords: DNA topoisomerase II; Chromosome segregation; Cell cycle; Polyploidy; Endoreduplication 1. Introduction through transient DNA cleavage, strand passing and religation (for a recent review, see [1]). So far, at The double-stranded nature of DNA poses im- least five different topoisomerases have been reported portant topological problems that arise during DNA to be present in higher eukaryotes, namely topoiso- metabolic processes such as replication, transcription merase I and topoisomerases III␣ and III, which are and segregation of daughter molecules.