Best Fermentation Management Practices
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The Switch from Fermentation to Respiration in Saccharomyces Cerevisiae Is Regulated by the Ert1 Transcriptional Activator/Repressor
INVESTIGATION The Switch from Fermentation to Respiration in Saccharomyces cerevisiae Is Regulated by the Ert1 Transcriptional Activator/Repressor Najla Gasmi,* Pierre-Etienne Jacques,† Natalia Klimova,† Xiao Guo,§ Alessandra Ricciardi,§ François Robert,†,** and Bernard Turcotte*,‡,§,1 ‡Department of Medicine, *Department of Biochemistry, and §Department of Microbiology and Immunology, McGill University Health Centre, McGill University, Montreal, QC, Canada H3A 1A1, †Institut de recherches cliniques de Montréal, Montréal, QC, Canada H2W 1R7, and **Département de Médecine, Faculté de Médecine, Université de Montréal, QC, Canada H3C 3J7 ABSTRACT In the yeast Saccharomyces cerevisiae, fermentation is the major pathway for energy production, even under aerobic conditions. However, when glucose becomes scarce, ethanol produced during fermentation is used as a carbon source, requiring a shift to respiration. This adaptation results in massive reprogramming of gene expression. Increased expression of genes for gluconeogenesis and the glyoxylate cycle is observed upon a shift to ethanol and, conversely, expression of some fermentation genes is reduced. The zinc cluster proteins Cat8, Sip4, and Rds2, as well as Adr1, have been shown to mediate this reprogramming of gene expression. In this study, we have characterized the gene YBR239C encoding a putative zinc cluster protein and it was named ERT1 (ethanol regulated transcription factor 1). ChIP-chip analysis showed that Ert1 binds to a limited number of targets in the presence of glucose. The strongest enrichment was observed at the promoter of PCK1 encoding an important gluconeogenic enzyme. With ethanol as the carbon source, enrichment was observed with many additional genes involved in gluconeogenesis and mitochondrial function. Use of lacZ reporters and quantitative RT-PCR analyses demonstrated that Ert1 regulates expression of its target genes in a manner that is highly redundant with other regulators of gluconeogenesis. -
Concepts in Wine Chemistry
THIRD EDITION Concepts IN Wine Chemistry YAIR MARGALIT, Ph.D. The Wine Appreciation Guild San Francisco Contents Introduction ix I. Must and Wine Composition 1 A. General Background 3 B. Sugars 5 C. Acids 11 D. Alcohols 22 E. Aldehydes and Ketones 30 F. Esters 32 G. Nitrogen Compounds 34 H. Phenols 43 I. Inorganic Constituents 52 References 55 n. Fermentation 61 A. General View 63 B. Chemistry of Fermentation 64 C. Factors Affecting Fermentation 68 D. Stuck Fermentation 77 E. Heat of Fermentation 84 F. Malolactic Fermentation 89 G. Carbonic Maceration 98 References 99 v III. Phenolic Compounds 105 A. Wine Phenolic Background 107 B. Tannins 120 C. Red Wine Color 123 D. Extraction of Phenolic Compounds from Grapes 139 References 143 IV. Aroma and Flavor 149 A. Taste 151 B. Floral Aroma 179 C. Vegetative Aroma 189 D. Fruity Aroma 194 E. Bitterness and Astringency 195 F. Specific Flavors 201 References 214 V. Oxidation and Wine Aging 223 A. General Aspects of Wine Oxidation 225 B. Phenolic Oxidation 227 C. Browning of White Wines 232 D. Wine Aging 238 References 253 VI. Oak Products 257 A. Cooperage 259 B. Barrel Aging 274 C. Cork 291 References 305 vi VH. Sulfur Dioxide 313 A. Sulfur-Dioxide as Food Products Preservative 315 B. Sulfur-Dioxide Uses in Wine 326 References 337 Vm. Cellar Processes 341 A. Fining 343 B. Stabilization 352 C. Acidity Adjustment 364 D. Wine Preservatives 372 References 382 IX. Wine Faults 387 A. Chemical Faults 389 B. Microbiological Faults 395 C. Summary ofFaults 402 References 409 X. -
Novel Industrial Bioprocesses for Production of Key Valuable Steroid Precursors from Phytosterol
Novel industrial bioprocesses for production of key valuable steroid precursors from phytosterol Project acronym: MySterI (Mycobacterial Steroids for Industry) Project no: EIB.12.010 Name: Carlos Barreiro ERA‐IB‐2 final conference, Berlin, 16./17.02.2016 Project partners 2 Research Centres 2 Universities 1 SME 1 Large Enterprise Project acronym: MySterI ERA‐IB‐2 Final conference, Berlin, 16./17.02.2016 www.era‐ib.net P1: INBIOTEC Project partners • P1: COORDINATOR: Asociación de investigación‐ INBIOTEC‐Instituto de Biotecnología de León (Research Centre). León (Spain). • Dr. Carlos Barreiro, Dr. Antonio Rodríguez‐García, Dr. Alberto Sola‐Landa MySterI tasks of INBOTEC: ‐Genome sequencing Mycobacterium sp NRRL B‐3805 ‐Genome mining and annotation ‐Transcriptomics (microarrays, RNAseq) ‐Proteomics (secretome analysis) • Total project budget: 93 000 € Project acronym: MySterI ERA‐IB‐2 Final conference, Berlin, 16./17.02.2016 www.era‐ib.net P2: Pharmins ltd. Project partners • P2: Pharmins Ltd. (SME) Pushchino (Russian Federation) • Dr. Marina Donova MySterI tasks of Pharmins: ‐Genome sequencing Mycobacterium sp NRRL B‐3805 ‐Biochemical characterization of proteins ‐Sterol conversion by modified mycobacterial strains ‐Two‐steps fermentation to obtain 11‐α‐OH‐AD ‐Modification of 11α‐hydroxylase enzymes • Total project budget: 123 743 € Project acronym: MySterI ERA‐IB‐2 Final conference, Berlin, 16./17.02.2016 www.era‐ib.net P3: University of York Project partners • P3: University of York (University) York (UK) • Professor Maggie Smith, Dr Jessica Loraine MySterI tasks of U. of York: ‐Genome sequencing Mycobacterium sp NRRL B‐3805 ‐Genetic tools and strain development ‐Development of DNA transformation procedures ‐Development of gene knock‐out techniques ‐Development of promoters to control gene expression • Total project budget: 312 246€ Project acronym: MySterI ERA‐IB‐2 Final conference, Berlin, 16./17.02.2016 www.era‐ib.net P4: Stiftelsen SINTEF Project partners • P4: Stiftelsen SINTEF (Research centre). -
Fermentation Microorganisms and Flavor Changes in Fermented Foods R.F
Fermentation Technology—12th World Congress of Food Science and Technology Fermentation Microorganisms and Flavor Changes in Fermented Foods R.F. MCFEETERS ABSTRACT: Food fermentation processes often result in profound changes in flavor relative to the starting ingredients. However, fermenting foods are typically very complex ecosystems with active enzyme systems from the ingredient materials interacting with the metabolic activities of the fermentation organisms. Factors such as added salt, particle sizes, temperature, and oxygen levels will also have important effects on the chemistry that occurs during fermentation. This is a brief review of recent research on flavor changes in food fermentations. The emphasis will be on the role of lactic acid bacteria in changing the compounds that help determine the character of fermented foods from plant-based substrates. Introduction GC-olfactometry led to recognition of a compound with an odor actic acid bacteria influence the flavor of fermented foods in a close to that of the fermentation brine. The compound with a fer- Lvariety of ways. In many cases, the most obvious change in a lac- mentation brine odor was identified as trans-4-hexenoic acid. They tic acid fermentation is the production of acid and lowering pH that also tentatively identified the presence of cis-4-hexenoic acid. In a results in an increase in sourness. Since most of the acid produced reconstitution experiment, a solution that contained 25 ppm trans- in fermentations will be produced by the metabolism of sugars, 4-hexenoic acid, 10 ppm phenyl ethyl alcohol, 0.65% lactic acid, sweetness will likely decrease as sourness increases. The produc- 0.05% acetic acid, and 8% NaCl had an odor very similar to that of tion of volatile flavor components tends to be the first mechanism brine from fermented cucumbers. -
Yeast Metabolism & Fermentation By-Products
1 Yeast Metabolism & Fermentation By-Products Influence on fermentation and product quality VLB-Berlin; B.H.Meyer ■ ■ ■ Craft Brewers Conference 2015, Portland, OR ■ 2 VLB-Berlin; B.H.Meyer ■ ■ ■ Craft Brewers Conference 2015, Portland, OR ■ 3 VLB-Berlin; B.H.Meyer ■ ■ ■ Craft Brewers Conference 2015, Portland, OR ■ 4 “Brewer’s yeast dissolved in water disintegrates in countless, tiniest beads. Upon adding them to sugared water the magic begins and small animals begin to form. With their tiny suction spouts they eagerly suck up sugar from this solution whereupon immediate and unmistakable digestion sets in, characterised by spontaneous release of excrements from their bowels. They excrete ethyl alcohol from their intestines and carbonic acid from their urinary tract. Come, take a closer look at them. Do you see the incessant stream of a specifically lighter liquid rising from their anus and the gushes of carbonic acid being spurted out from their enormous genitals in short intervals?” Liebig, Justus v. (1803-1875) VLB-Berlin; B.H.Meyer ■ ■ ■ Craft Brewers Conference 2015, Portland, OR ■ Uni-düsseldorf.de 5 Biochemical Changes during Fermentation 1. Fermentation of carbohydrates 2. Nitrogen in wort Assimilation/ Dissimilation 3. Formation of metabolic compounds Acids • CO2 • Organic acids Alcohols • Ethanol • Secondary and tertiary alcohols • Higher aliphatic alcohols (HAA) • Aromatic alcohols Esters Aldehydes and Ketones Vicinal Diketones (VDK) Sulphur-containing compounds VLB-Berlin; B.H.Meyer ■ ■ ■ Craft Brewers Conference 2015, Portland, -
Growth Regulators Offer Numerous Benefits
Uc LL The growth regulator ethephon increases color of Cardinal grapes without normal light. First and third clusters from left were treated with ethephon. Two clusters on left had normal light; the other two received no light. The first experiments with gibberellic acid (GA3) on grapes were made in 1957. By the early 196Os, sprays of GA3 had replaced 4-CPA as a means of increasing berry size in Black Corinth. To produce the Zante Currants desired by the bakery trade, GA3 is sprayed from the time of 95 percent capfall until three days later. GA3 is now used on all Thompson Seedless grapes for table use. For several years vines were sprayed at 20 to 40 ppm at the fruit-set stage to increase berry size. However, some clusters were quite compact in spite of cluster and berry thinning to prevent over- cropping. Five years after the first use of GA3 on Thompson Seedless, it was noted that vines sprayed at bloom were properly thinned, Growth regulators mainly because fruit-set was reduced, so that clusters were not too compact. Soon the recommended method was to use two GA3 ap- plications, one at full bloom for thinning and increasing size, and offer numerous benefits the other at fruit-set to further increase size. Girdling is also per- Robert J. Weaver formed at fruit-set, or shortly afterwards, to further increase berry size and make the berries more uniform and more firmly attached Since the 1920s, girdling of Thompson Seedless vines has been to the cap stem. An additional spray about two weeks after fruit-set used to increase the size of the table grapes. -
Growing Grapes in Missouri
MS-29 June 2003 GrowingGrowing GrapesGrapes inin MissouriMissouri State Fruit Experiment Station Missouri State University-Mountain Grove Growing Grapes in Missouri Editors: Patrick Byers, et al. State Fruit Experiment Station Missouri State University Department of Fruit Science 9740 Red Spring Road Mountain Grove, Missouri 65711-2999 http://mtngrv.missouristate.edu/ The Authors John D. Avery Patrick L. Byers Susanne F. Howard Martin L. Kaps Laszlo G. Kovacs James F. Moore, Jr. Marilyn B. Odneal Wenping Qiu José L. Saenz Suzanne R. Teghtmeyer Howard G. Townsend Daniel E. Waldstein Manuscript Preparation and Layout Pamela A. Mayer The authors thank Sonny McMurtrey and Katie Gill, Missouri grape growers, for their critical reading of the manuscript. Cover photograph cv. Norton by Patrick Byers. The viticulture advisory program at the Missouri State University, Mid-America Viticulture and Enology Center offers a wide range of services to Missouri grape growers. For further informa- tion or to arrange a consultation, contact the Viticulture Advisor at the Mid-America Viticulture and Enology Center, 9740 Red Spring Road, Mountain Grove, Missouri 65711- 2999; telephone 417.547.7508; or email the Mid-America Viticulture and Enology Center at [email protected]. Information is also available at the website http://www.mvec-usa.org Table of Contents Chapter 1 Introduction.................................................................................................. 1 Chapter 2 Considerations in Planning a Vineyard ........................................................ -
The Effect of 2-Desoxy-D-Glucose on Glycolysis and Respiration of Tumor and Normal Tissues
The Effect of 2-Desoxy-D-glucose on Glycolysis and Respiration of Tumor and Normal Tissues GLADYSE. WOODWARDANDMARIET. HUDSON (Biochemical Research Foundation, Newark, Delaware) Inhibition of metabolism by structural analogs end of each experiment. Reaction rates are expressed of metabolites is one of the newer concepts of of dry tissue/hour, and are based on the initial steady rate. chemotherapy. It seems possible that this concept The symbols, QCOJ.Qco2>an<l Q<v are used to express, re spectively, the rates of anaerobic glycolysis, aerobic glycolysis, might be applied to cancer by use of structural and respiration. The Q values as given in the tables are from analogs of glucose to inhibit the glycolysis of the single or duplicate determinations. tumor cell, since tumor tissue in contrast to most normal tissues possesses the ability to glycolyze RESULTS glucose at a high rate both anaerobically and EFFECTop 2DG ONGLYCOLYSIS aerobically (7). It was found that 2DG in the maximum concen 2-Desoxy-D-glucose (2DG) is a structural ana tration used with each tissue did not significantly log of glucose, differing from glucose only at the affect the endogenous glycolysis of any of the tis second carbon atom by the absence of one oxygen sues studied. Calculation of the degree of inhibi atom. This analog has been shown (2) to compete tion of glucose or fructose utilization, therefore, is with glucose in the yeast fermentation system and, based on the Q values from which the correspond thereby, to inhibit fermentation of glucose. In a ing blank Q value has been subtracted. -
Phenolic Compounds As Markers of Wine Quality and Authenticity
foods Review Phenolic Compounds as Markers of Wine Quality and Authenticity Vakare˙ Merkyte˙ 1,2 , Edoardo Longo 1,2,* , Giulia Windisch 1,2 and Emanuele Boselli 1,2 1 Faculty of Science and Technology, Free University of Bozen-Bolzano, Piazza Università 5, 39100 Bozen-Bolzano, Italy; [email protected] (V.M.); [email protected] (G.W.); [email protected] (E.B.) 2 Oenolab, NOI Techpark South Tyrol, Via A. Volta 13B, 39100 Bozen-Bolzano, Italy * Correspondence: [email protected]; Tel.: +39-0471-017691 Received: 29 October 2020; Accepted: 28 November 2020; Published: 1 December 2020 Abstract: Targeted and untargeted determinations are being currently applied to different classes of natural phenolics to develop an integrated approach aimed at ensuring compliance to regulatory prescriptions related to specific quality parameters of wine production. The regulations are particularly severe for wine and include various aspects of the viticulture practices and winemaking techniques. Nevertheless, the use of phenolic profiles for quality control is still fragmented and incomplete, even if they are a promising tool for quality evaluation. Only a few methods have been already validated and widely applied, and an integrated approach is in fact still missing because of the complex dependence of the chemical profile of wine on many viticultural and enological factors, which have not been clarified yet. For example, there is a lack of studies about the phenolic composition in relation to the wine authenticity of white and especially rosé wines. This review is a bibliographic account on the approaches based on phenolic species that have been developed for the evaluation of wine quality and frauds, from the grape varieties (of V. -
Keys to Grape Sampling in This Issue Lindsay Jordan, UCCE Madera, Merced & Mariposa Keys to Grape Sampling I Spent Many Hours Walking Down Independently
August/September 2015 Keys to Grape Sampling In This Issue Lindsay Jordan, UCCE Madera, Merced & Mariposa Keys to Grape Sampling I spent many hours walking down independently. Grape Maturity and vineyard rows in the early Raisin Quality Samples should never be taken morning hours collecting grape from vines at the end of a row or samples as a winery intern. At Factors Affecting Red the rows at the edge of the Grape Coloration the time, I focused on getting my vineyard, since these vines can job done – collecting samples County Updates sometimes ripen more quickly from each vineyard block, than the rest of the vineyard Vineyard Spotlight: measuring the sugar and acid, block and this “edge effect” will Esca and reporting these values not represent your vineyard promptly to the vineyard Upcoming Events block. managers and winemakers, but I didn’t appreciate how important All sugar sampling should occur in avoid this by crushing the berry grape sampling was to the entire the cool morning, because sample in a clear plastic bag harvest operation. Every grower sampling in the heat of the day and visually checking there are knows that getting an accurate, can yield artificially high sugar no intact berries left or you can representative sample of fruit in values that will not represent the use a food mill, a piece of order to track ripening and plan actual sugar at harvest. kitchenware commonly used in for harvest is critical, but this is Sampling should be postponed if canning to separate fruit skin not an easy thing to do. -
Cellular Respiration and Fermentation
LECTURE PRESENTATIONS For CAMPBELL BIOLOGY, NINTH EDITION Jane B. Reece, Lisa A. Urry, Michael L. Cain, Steven A. Wasserman, Peter V. Minorsky, Robert B. Jackson Chapter 9 Cellular Respiration and Fermentation Lectures by Erin Barley Kathleen Fitzpatrick © 2011 Pearson Education, Inc. Overview: Life Is Work • Living cells require energy from outside sources • Some animals, such as the chimpanzee, obtain energy by eating plants, and some animals feed on other organisms that eat plants © 2011 Pearson Education, Inc. Figure 9.1 • Energy flows into an ecosystem as sunlight and leaves as heat • Photosynthesis generates O2 and organic molecules, which are used in cellular respiration • Cells use chemical energy stored in organic molecules to regenerate ATP, which powers work © 2011 Pearson Education, Inc. Figure 9.2 Light energy ECOSYSTEM Photosynthesis in chloroplasts Organic CO H O O 2 2 molecules 2 Cellular respiration in mitochondria ATP powers ATP most cellular work Heat energy Concept 9.1: Catabolic pathways yield energy by oxidizing organic fuels • Several processes are central to cellular respiration and related pathways © 2011 Pearson Education, Inc. Catabolic Pathways and Production of ATP • The breakdown of organic molecules is exergonic • Fermentation is a partial degradation of sugars that occurs without O2 • Aerobic respiration consumes organic molecules and O2 and yields ATP • Anaerobic respiration is similar to aerobic respiration but consumes compounds other than O2 © 2011 Pearson Education, Inc. • Cellular respiration includes both aerobic and anaerobic respiration but is often used to refer to aerobic respiration • Although carbohydrates, fats, and proteins are all consumed as fuel, it is helpful to trace cellular respiration with the sugar glucose C6H12O6 + 6 O2 6 CO2 + 6 H2O + Energy (ATP + heat) © 2011 Pearson Education, Inc. -
Honey Refractometers Measure Moisture Content Honey Refractometers Are Used by Beekeepers and Honey Packers to Measure the Moisture Content of Honey
Honey refractometers measure moisture content Honey refractometers are used by beekeepers and honey packers to measure the moisture content of honey. Technically, refractometers measure the refractive index of a substance. Explanation: Light travels at different speeds through different materials. The refractive index is just a comparison between two numbers: the speed of light through a vacuum and the speed of light through the material you are testing—in this case honey. Light also changes direction after it passes through different materials. If you measure the difference between the angle of incidence (light coming in) and the angle of refraction (light coming out) of a substance you can use this number to determine the refractive index. This is how a refractometer actually works. Explanation: If you look at a straw in a glass of water you will see it looks distorted. This is because light moves faster through just the glass than it does through the glass and the water combined. Likewise, light will move faster through honey that has few solids than it will move through honey that has many solids. In other words, the refractive index of honey will change based on the amount of solids (sugars and other substances) in it. Refractometers also make corrections based on temperature, because the refractive index will change slightly as the temperature changes. Now, to make this all the more perplexing, the amount of solids in a liquid is measured on a scale called the Brix scale. 1 degree Brix (written °Bx ) means 1 g of sucrose per 100 g of aqueous solution.