Firemouth Cichlid (Thorichthys Meeki) ERSS
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A Tale of Two Herichthys
MISCELLANEOUS PUBLICATIONS MUSEUM OF ZOOLOGY, UNIVERSITY OF MICHIGAN, NO. 209(1): 1-18 LIVE COLOR PATTERNS DIAGNOSE SPECIES: A TALE OF TWO HERICHTHYS By RONALD G. OLDFIELD1,2, ABHINAV KAKUTURU1, 2 3 4 WILLIAM I. LUTTERSCHMIDT , O. TOM LORENZ , ADAM E. COHEN , AND DEAN A. HENDRICKSON4 Department of Ecology and Evolutionary Biology and Museum of Zoology University of Michigan Ann Arbor, Michigan 48109–1079, USA Ann Arbor, April 27, 2021 ISSN 0076-8406 JOHN LUNDBERG1, EDITOR GERALD SMITH2, EDITOR MACKENZIE SCHONDELMAYER2, COMPOSITOR 1Department of Ichthyology, The Academy of Natural Sciences of Drexel University, Philadelphia, PA 19103 2Museum of Zoology, University of Michigan, Ann Arbor, MI 48197 LIVE COLOR PATTERNS DIAGNOSE SPECIES: A TALE OF TWO HERICHTHYS By RONALD G. OLDFIELD1,2, ABHINAV KAKUTURU1, WILLIAM I. LUTTERSCHMIDT2, O. TOM LORENZ3, ADAM E. COHEN4, AND DEAN A. HENDRICKSON4 ABSTRACT The Rio Grande Cichlid, Herichthys cyanoguttatus, is native to the drainages of the Gulf Coast of northern Mexico and southern Texas and has been introduced at several sites in the US. Previous observations have suggested that non-native populations in Louisiana that are currently recognized as H. cyanoguttatus resemble another species, the Lowland Cichlid, H. carpintis. Traditional morphological and genetic techniques have been insufficient to differentiate these species, but H. carpintis has been reported to differ fromH. cyanoguttatus in color pattern, so we turned to novel electronic photo archives to determine the identity of the species introduced in Louisiana. First, we used the public databases Nonindigenous Aquatic Species Database and Fishes of Texas to infer the historical distributions of these species in the US. -
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
USF Board of Trustees ( March 7, 2013)
Agenda item: (to be completed by Board staff) USF Board of Trustees ( March 7, 2013) Issue: Proposed Ph.D. in Integrative Biology ________________________________________________________________ Proposed action: New Degree Program Approval ________________________________________________________________ Background information: This application for a new Ph.D is driven by a recent reorganization of the Department of Biology. The reorganization began in 2006 and was completed in 2009. The reorganization of the Department of Biology, in part, reflected the enormity of the biological sciences, and in part, different research perspectives and directions taken by the faculty in each of the respective areas of biology. Part of the reorganization was to replace the original Ph.D. in Biology with two new doctoral degrees that better serve the needs of the State and our current graduate students by enabling greater focus of the research performed to earn the Ph.D. The well-established and highly productive faculty attracts students to the Tampa Campus from all over the United States as well as from foreign countries. The resources to support the two Ph.D. programs have already been established in the Department of Biology and are sufficient to support the two new degree programs. The reorganization created two new departments; the Department of Cell Biology, Microbiology, and Molecular Biology (CMMB) and the Department of Integrative Biology (IB). This proposal addresses the creation of a new Ph.D., in Integrative Biology offered by the Department of Integrative Biology (CIP Code 26.1399). The name of the Department, Integrative Biology, reflects the belief that the study of biological processes and systems can best be accomplished by the incorporation of numerous integrated approaches Strategic Goal(s) Item Supports: The proposed program directly supports the following: Goal 1 and Goal 2 Workgroup Review: ACE March 7, 2013 Supporting Documentation: See Complete Proposal below Prepared by: Dr. -
Conservation and Ecology of Marine Forage Fishes— Proceedings of a Research Symposium, September 2012
Conservation and Ecology of Marine Forage Fishes— Proceedings of a Research Symposium, September 2012 Open-File Report 2013–1035 U.S. Department of the Interior U.S. Geological Survey Cover: Upper Left: Herring spawn, BC coast – Milton Love, “Certainly More Than You Want to Know About the Fishes of the Pacific Coast,” reproduced with permission. Left Center: Tufted Puffin and sand lance (Smith Island, Puget Sound) – Joseph Gaydos, SeaDoc Society. Right Center: Symposium attendants – Tami Pokorny, Jefferson County Water Resources. Upper Right: Buried sand lance – Milton Love, “Certainly More Than You Want to Know About the Fishes of the Pacific Coast,” reproduced with permission. Background: Pacific sardine, CA coast – Milton Love, “Certainly More Than You Want to Know About the Fishes of the Pacific Coast,” reproduced with permission. Conservation and Ecology of Marine Forage Fishes— Proceedings of a Research Symposium, September 2012 Edited by Theresa Liedtke, U.S. Geological Survey; Caroline Gibson, Northwest Straits Commission; Dayv Lowry, Washington State Department of Fish and Wildlife; and Duane Fagergren, Puget Sound Partnership Open-File Report 2013–1035 U.S. Department of the Interior U.S. Geological Survey U.S. Department of the Interior KEN SALAZAR, Secretary U.S. Geological Survey Marcia K. McNutt, Director U.S. Geological Survey, Reston, Virginia: 2013 For more information on the USGS—the Federal source for science about the Earth, its natural and living resources, natural hazards, and the environment—visit http://www.usgs.gov or call 1–888–ASK–USGS For an overview of USGS information products, including maps, imagery, and publications, visit http://www.usgs.gov/pubprod To order this and other USGS information products, visit http://store.usgs.gov Suggested citation: Liedtke, Theresa, Gibson, Caroline, Lowry, Dayv, and Fagergren, Duane, eds., 2013, Conservation and Ecology of Marine Forage Fishes—Proceedings of a Research Symposium, September 2012: U.S. -
Third International Symposium on Mangroves As Fish Habitat Abstracts*
Bull Mar Sci. 96(3):539–560. 2020 abstracts https://doi.org/10.5343/bms.2019.0047 Third International Symposium on Mangroves as Fish Habitat Abstracts* COMMUNITY COMPOSITION AND DIVERSITY OF PHYTOPLANKTON IN RELATION TO ENVIRONMENTAL VARIABLES AND SEASONALITY IN A TROPICAL MANGROVE ESTUARY, MALAYSIA by ABU HENA MK, Saifullah ASM, Idris MH, Rajaee AH, Rahman MM.—Phytoplankton are the base of the aquatic food chain from which energy is transferred to higher organisms. The community and abundance of phytoplankton in a tropical mangrove estuary were examined in Sarawak, Malaysia. Monthly-collected data from January 2013 to December 2013 was pooled into seasons to examine the influence of seasonality. The estuary was relatively species-rich and a total of 102 species under 43 genera were recorded, comprising 6 species of Cyanophyceae, 4 species of Chlorophyceae, 63 species of Bacillariophyceae, and 29 species of Dinophyceae. The mean abundance (cells L−1) of phytoplankton was found in the following order: Bacillariophyceae > Dinophyceae > Cyanophyceae > Chlorophyceae. Mean abundance of phytoplankton ranged from 5694 to 88,890 cells L−1 over the study period, with a higher value in the dry season. Species recorded from the estuary were dominated by Pleurosigma normanii, Coscinodiscus sp., Coscinodiscus centralis, Coscinodiscus granii, Dinophysis caudata, Ceratium carriense, Ceratium fusus, and Ceratium lineatum. Abundance of phytoplankton was positively influenced by chlorophyll a (R = 0.69), ammonium (R = 0.64), and silica (R = 0.64). Significant differences (ANOSIM and NMDS) were observed in the species community structure between the intermediate and wet season. The species assemblages were positively correlated with surface water temperature, salinity, pH, ammonium, and nitrate in the intermediate and dry season toward larger species composition in the respective seasons, whereas silica influenced species assemblage in the wet season. -
Bering Sea Integrated Ecosystem Research Program
NORTH PACIFIC RESEARCH BOARD BERING SEA INTEGRATED ECOSYSTEM RESEARCH PROGRAM FINAL REPORT Ichthyoplankton: horizontal, vertical, and temporal distribution of larvae and juveniles of Walleye Pollock, Pacific Cod, and Arrowtooth Flounder, and transport pathways between nursery areas NPRB BSIERP Project B53 Final Report Janet Duffy-Anderson1, Franz Mueter2, Nicola Hillgruber2, Ann Matarese1, Jeffrey Napp1, Lisa Eisner3, T. Smart4, 5, Elizabeth Siddon2, 1, Lisa De Forest1, Colleen Petrik2, 6 1Alaska Fisheries Science Center, National Oceanic and Atmospheric Administration, 7600 Sand Point Way NE, Seattle, WA 98115, USA 2University of Alaska Fairbanks, School of Fisheries and Ocean Sciences, 17101 Point Lena Loop Road, Juneau, AK 99801 USA 3Ted Stevens Marine Research Institute, Alaska Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 17109 Pt. Lena Loop Road, Juneau, AK 99801, USA 4School of Aquatic and Fishery Sciences, University of Washington, Seattle, WA 98195-5020, USA 5Present affiliation: Marine Resources Research Institute, South Carolina Department of Natural Resources, Charleston, South Carolina 29422, USA 6Present affiliation: UC Santa Cruz, Institute of Marine Sciences, 110 Shaffer Rd., Santa Cruz, CA 95060, USA December 2014 1 Table of Contents Page Abstract ........................................................................................................................................................... 3 Study Chronology .......................................................................................................................................... -
Selection, Constraint, and Adaptation in the Visual Genes of Neotropical Cichlid Fishes and Other Vertebrates
SELECTION, CONSTRAINT, AND ADAPTATION IN THE VISUAL GENES OF NEOTROPICAL CICHLID FISHES AND OTHER VERTEBRATES by Frances Elisabeth Hauser A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Ecology and Evolutionary Biology University of Toronto © Copyright by Frances E. Hauser 2018 SELECTION, CONSTRAINT, AND ADAPTATION IN THE VISUAL GENES OF NEOTROPICAL CICHLID FISHES AND OTHER VERTEBRATES Frances E. Hauser Doctor of Philosophy, 2018 Department of Ecology and Evolutionary Biology University of Toronto 2018 ABSTRACT The visual system serves as a direct interface between an organism and its environment. Studies of the molecular components of the visual transduction cascade, in particular visual pigments, offer an important window into the relationship between genetic variation and organismal fitness. In this thesis, I use molecular evolutionary models as well as protein modeling and experimental characterization to assess the role of variable evolutionary rates on visual protein function. In Chapter 2, I review recent work on the ecological and evolutionary forces giving rise to the impressive variety of adaptations found in visual pigments. In Chapter 3, I use interspecific vertebrate and mammalian datasets of two visual genes (RH1 or rhodopsin, and RPE65, a retinoid isomerase) to assess different methods for estimating evolutionary rate across proteins and the reliability of inferring evolutionary conservation at individual amino acid sites, with a particular emphasis on sites implicated in impaired protein function. ii In Chapters 4, and 5, I narrow my focus to devote particular attention to visual pigments in Neotropical cichlids, a highly diverse clade of fishes distributed across South and Central America. -
Mayan Cichlid (Cichlasoma Urophthalmum) Ecological Risk Screening Summary
U.S. Fish and Wildlife Service Mayan Cichlid (Cichlasoma urophthalmum) Ecological Risk Screening Summary Web Version – 11/01/2012 Photo: Alexander Calder 1 Native Range, and Status in the United States Native Range From Robins (2001): The Mayan cichlid is native to the Central American Atlantic slope waters of southeastern Mexico (including the Yucatán Peninsula), Belize, Guatemala, Honduras, and Nicaragua. Nonindigenous Occurrences From Schofield et al. (2011): “This species was first documented in Florida when specimens were observed and collected and observed in Everglades National Park in 1983; it is established in several areas in and around the park (Loftus 1987; Lorenz et al. 1997; Smith-Vaniz, personal communication [not cited]; Tilmant 1999) and Big Cypress National Preserve (Nico, unpublished data; Tilmant 1999).” “On the east side of Florida it has been recorded from Canal C-111 north to the Little River Canal (C-7 Canal) (Shafland 1995).” Cichlasoma urophthalmus Ecological Risk Screening Summary U.S. Fish and Wildlife Service – Web Version – 11/1/2012 “A single specimen was taken from a rock pit in Manatee County in October 1975 (Smith- Vaniz, personal communication [not cited]).” “Mayan ciclids have also been collected in Lake Okeechobee and Lake Osbourne, Palm Beach County in 2003 (Cocking 2003; Werner 2003).” “A new population was found in Charlotte Harbor in the summer of 2003 (Adams and Wolfe 2007; Associated Press 2003; Charlotte Harbor NEP 2004; Byrley, personal communication [not cited]). This is the most northern population known.” Reported established in Florida Panther National Wildlife Refuge (2005).” “A specimen was collected in Holiday Park in Broward County (International Game Fishing Association 2000).” “In 2006, this species was found to be established in Mobbly Bayou in Tampa Bay and in canals on Merritt Island in 2007 (Paperno et al. -
Evolutionary History of the Genus Rhamdia (Teleostei: Pimelodidae) in Central America
MOLECULAR PHYLOGENETICS AND EVOLUTION Molecular Phylogenetics and Evolution 25 (2002) 172–189 www.academicpress.com Evolutionary history of the genus Rhamdia (Teleostei: Pimelodidae) in Central America Anabel Perdices,a,b,* Eldredge Bermingham,a Antonia Montilla,b and Ignacio Doadriob a Smithsonian Tropical Research Institute, Apto. 2072, Balboa, Republic of Panama b Museo Nacional de Ciencias Naturales, CSIC, Jose Gutierrez Abascal 2, 28006 Madrid, Spain Received 11 June 2001; received in revised form 2 January 2002 Abstract We constructed phylogenetic hypotheses for Mesoamerican Rhamdia, the only genus of primary freshwater fish represented by sympatric species across Central America. Phylogenetic relationships were inferred from analysis of 1990 base pairs (bp) of mito- chondrial DNA (mtDNA), represented by the complete nucleotide sequences of the cytochrome b (cyt b) and the ATP synthase 8 and 6 (ATPase 8/6) genes. We sequenced 120 individuals from 53 drainages to provide a comprehensive geographic picture of Central American Rhamdia systematics and phylogeography. Phylogeographic analysis distinguished multiple Rhamdia mtDNA lineages, and the geographic congruence across evolutionarily independent Rhamdia clades indicated that vicariance has played a strong role in the Mesoamerican diversification of this genus. Phylogenetic analyses of species-level relationships provide strong support for the monophyly of a trans-Andean clade of three evolutionarily equivalent Rhamdia taxa: R. guatemalensis, R. laticauda, and R. ciner- ascens. Application of fish-based mitochondrial DNA clocks ticking at 1.3–1.5% sequence divergence per million years (Ma), suggests that the split between cis- and trans-Andean Rhamdia extends back about 8 Ma, and the three distinct trans-Andean Rhamdia clades split about 6 Ma ago. -
Summary Report of Freshwater Nonindigenous Aquatic Species in U.S
Summary Report of Freshwater Nonindigenous Aquatic Species in U.S. Fish and Wildlife Service Region 4—An Update April 2013 Prepared by: Pam L. Fuller, Amy J. Benson, and Matthew J. Cannister U.S. Geological Survey Southeast Ecological Science Center Gainesville, Florida Prepared for: U.S. Fish and Wildlife Service Southeast Region Atlanta, Georgia Cover Photos: Silver Carp, Hypophthalmichthys molitrix – Auburn University Giant Applesnail, Pomacea maculata – David Knott Straightedge Crayfish, Procambarus hayi – U.S. Forest Service i Table of Contents Table of Contents ...................................................................................................................................... ii List of Figures ............................................................................................................................................ v List of Tables ............................................................................................................................................ vi INTRODUCTION ............................................................................................................................................. 1 Overview of Region 4 Introductions Since 2000 ....................................................................................... 1 Format of Species Accounts ...................................................................................................................... 2 Explanation of Maps ................................................................................................................................ -
Temporal Diversification of Mesoamerican Cichlid Fishes Across
MOLECULAR PHYLOGENETICS AND EVOLUTION Molecular Phylogenetics and Evolution 31 (2004) 754–764 www.elsevier.com/locate/ympev Temporal diversification of Mesoamerican cichlid fishes across a major biogeographic boundary C. Darrin Hulsey,a,* Francisco J. Garcıa de Leon, b Yara Sanchez Johnson,b Dean A. Hendrickson,c and Thomas J. Neara,1 a Center for Population Biology, Department of Evolution and Ecology, University of California-Davis, Davis, CA 95616, USA b Laboratorio de Biologıa Integrativa, Instituto Tecnologico de Cuidad Victoria (ITCV), Mexico c Section of Integrative Biology, University of Texas-Austin, Austin, TX 78712, USA Received 18 June 2003; revised 26 August 2003 Abstract The Mexican Neovolcanic Plateau sharply divides the vertebrate fauna of Mesoamerica where the climate of both the neotropics and temperate North America gradually blend. Only a few vertebrate groups such as the Heroine cichlids, distributed from South America to the Rio Grande in North America, are found both north and south of the Neovolcanic Plateau. To better understand the geography and temporal diversification of cichlids at this geologic boundary, we used mitochondrial DNA sequences of the cy- tochrome b (cyt b) gene to reconstruct the relationships of 52 of the approximately 80 species of Heroine cichlids in Mesoamerica. Our analysis suggests several cichlids in South America should be considered as part of the Mesoamerican Heroine clade because they and the cichlids north of the Isthmus of Panama are clearly supported as monophyletic with respect to all other Neotropical cichlids. We also recovered a group containing species in Paratheraps + Paraneetroplus + Vieja as the sister clade to Herichthys. Herichthys is the only cichlid clade north of the Mexican Plateau and it is monophyletic. -
Rapid Evolution and Selection Inferred from the Transcriptomes of Sympatric Crater Lake Cichlid Fishes
Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes K. R. ELMER, S. FAN, H. M. GUNTER, J. C. JONES, S. BOEKHOFF, S. KURAKU and A. MEYER Lehrstuhl fUr Zoologie und Evolutionsbiologie, Department of Biology, University of Konstanz, Universitiitstrasse 10, 78457 Konstanz, Germany Abstract Crater lakes provide a natural laboratory to study speciation of cichlid fishes by ecological divergence. Up to now, there has been a dearth of transcriptomic and genomic information that would aid in understanding the molecular basis of the phenotypic differentiation between young species. We used next-generation sequencing (Roche 454 massively parallel pyrosequencing) to characterize the diversity of expressed sequence tags between ecologically divergent, endemic and sympatric species of cichlid fishes from crater lake Apoyo, Nicaragua: benthic Amphilophus astorquii and limnetic Amphilophus zaliosus. We obtained 24174 A. astorquii and 21382 A. zaliosus high quality expressed sequence tag contigs, of which 13 106 pairs are orthologous between species. Based on the ratio of non synonymous to synonymous substitutions, we identified six sequences exhibiting signals of strong diversifying selection (KalKs > 1). These included genes involved in biosynthesis, metabolic processes and development. This transcriptome sequence variation may be reflective of natural selection acting on the genomes of these young, sympatric sister species. Based on Ks ratios and p-distances between 3'-untranslated regions (UTRs) calibrated to previously published species divergence times, we estimated a neutral transcriptome-wide substitutional mutation rate of ~1.25 x 10-6 per site per year. We conclude that next-generation sequencing technologies allow us to infer natural selection acting to diversify the genomes of young species, such as crater lake cichlids, with much greater scope than previously possible.