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The Use of Forensic Polycyclic Aromatic Hydrocarbon
The use of Forensic Polycyclic Aromatic Hydrocarbon Signatures and Compound Ratio Analysis Techniques (CORAT) for the Source Characterisation of Petrogenic / Pyrogenic Environmental Releases Mr Ken Scally Master of Science (Research) Galway Mayo Institute of Technology (GMIT) Dr Myles Keogh Dr Gay Keaveney Submitted to the Higher Education and Training Declaration The contents of this thesis have not been submitted as an exercise for a degree at this or any other College or University. The contents are entirely my own work. The sample location is anonymous to provide confidentiality in this study. Permission is required from die author before a library can lend this thesis. ^ II jf \,fo°\ | 4 (A A.C-S Cf 1 Signed: ^ L t y / u 6 ~ > d - Ken Scally BSc (Hons), MICI, ISEF Dedication To Pauline and my Parents Table of Contents Table of Contents Page N um ber Declaration.................................................................................................................................................................. iii Dedication........................................................................................................................ ........................................ iv Table of Contents....................................................................................................................................................... v List o f Figures........................................................................................................................................................... -
UNIVERSITY of CALIFORNIA RIVERSIDE Investigation of The
UNIVERSITY OF CALIFORNIA RIVERSIDE Investigation of the Composition and Preservation Potential of Precambrian Sedimentary Organic Matter and Lipid Biosignatures A Dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Geological Sciences by Kelden Pehr June 2020 Dissertation Committee: Dr. Gordon D. Love, Chairperson Dr. Andrey Bekker Dr. Marilyn Fogel Copyright by Kelden Pehr 2020 The Dissertation of Kelden Pehr is approved: Committee Chairperson University of California, Riverside ACKNOWLEDGMENTS This research was made possible through funding and support from the NASA Earth and Space Science Fellowship (17-PLANET17R-0019), the Earle C Anthony Award and the UCR Dissertation Year Fellowship. I am very grateful to my advisor Gordon Love, whose support and guidance has been invaluable over these past years. I would like to thank my qualifying exams and defense committee members as follows: Andrey Bekker for the many opportunities and great conversations; Marilyn Fogel for the encouragement and excellent discussions on all things biogeochemical; Mary Dorser for welcoming me as an honorary member of the Droser lab; and Francesca Hopkins for asking the big questions. Rose Bisquera, Carina Lee, Alex Zumberge, JP Duda, Adam Hoffman, Nathan Marshall, and Adriana Rizzo were all wonderful lab mentors and mates. Steven Bates and Laurie Graham provided much needed support in the dark hours of instrument failure. Aaron Martinez deserves a special shout out for the awesome adventures, fantastic food, and long hours of laughter. I have had the pleasure to work with an amazing cast of collaborators, without whom, this research presented here would not have been possible. -
The Origins of Pottery Among Late Prehistoric Hunter-Gatherers in California and the Western Great Basin
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/35493087 The origins of pottery among late prehistoric hunter-gatherers in california and the western great basin / Article · December 2000 Source: OAI CITATIONS READS 9 258 2 authors, including: Jelmer W. Eerkens University of California, Davis 117 PUBLICATIONS 1,997 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Evolution of Intoxicant Plant Use View project All content following this page was uploaded by Jelmer W. Eerkens on 03 September 2014. The user has requested enhancement of the downloaded file. UNIVERSITY OF CALIFORNIA Santa Barbara The Origins of Pottery among Late Prehistoric Hunter-Gatherers in California and the Western Great Basin A Dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Anthropology by Jelmer W. Eerkens Committee in charge: Professor Michael Jochim, Chairperson Professor Mark Aldenderfer Professor Robert Bettinger Professor Michael Glassow i The dissertation of Jelmer W. Eerkens is approved _______________________________________________ _______________________________________________ _______________________________________________ _______________________________________________ Committee Chairperson December 2000 ii December, 2000 Copyright by Jelmer W. Eerkens 2000 iii Acknowledgements Many people and organizations provided support and assistance to help make this dissertation a reality. I would like to thank the Wenner-Gren Foundation for Anthropological Research for providing funding in the form of a Predoctoral Grant (#6259), and the National Science Foundation for granting a Doctoral Dissertation Improvement Grant (#9902836). These funds were crucial to help pay for the Instrumental Neutron Activation Analyses, Gas-Chromatography Mass-Spectrometry analyses, and some supplementary dating, palaeobotanical, and other research referenced in the text. -
Science Journals — AAAS
RESEARCH EARLY ANIMALS years. For instance, hopanes are the hydrocarbon remains of bacterial hopanepolyols, whereas sat- urated steranes and aromatic steroids are diage- Ancient steroids establish netic products of eukaryotic sterols. The most common sterols of Eukarya possess a cholester- oid, ergosteroid, or stigmasteroid skeleton with the Ediacaran fossil Dickinsonia 27, 28, or 29 carbon atoms, respectively. These C27 to C29 sterols, distinguished by the alkylation as one of the earliest animals patternatpositionC-24inthesterolsidechain, function as membrane modifiers and are widely 1 1 2 3 distributed across extant Eukarya, but their rela- Ilya Bobrovskiy *, Janet M. Hope , Andrey Ivantsov , Benjamin J. Nettersheim , 3,4 1 tive abundances can give clues about the source Christian Hallmann , Jochen J. Brocks * organisms (24). Apart from Dickinsonia (Fig.1B),whichis The enigmatic Ediacara biota (571 million to 541 million years ago) represents the first one of the most recognizable Ediacaran fossils, macroscopic complex organisms in the geological record and may hold the key to our dickinsoniids include Andiva (Fig. 1C and fig. understanding of the origin of animals. Ediacaran macrofossils are as “strange as life on S1), Vendia, Yorgia, and other flattened Edia- another planet” and have evaded taxonomic classification, with interpretations ranging from caran organisms with segmented metameric marine animals or giant single-celled protists to terrestrial lichens. Here, we show that lipid bodies and a median line along the body axes, biomarkers extracted from organically preserved Ediacaran macrofossils unambiguously separating the “segments.” The specimens for clarify their phylogeny. Dickinsonia and its relatives solely produced cholesteroids, a Downloaded from this study were collected from two surfaces in hallmark of animals. -
Back Matter (PDF)
Index Acraman impact ejecta layer 53–4, 117, 123, 126–9, Aspidella 130–2, 425–7 controversy 300, 301–3, 305 acritarchs ecology 303 Amadeus and Officer Basins 119 synonyms 302 biostratigraphy 115–25, 130–2 Australia Australian correlations 130–2 Acraman impact ejecta layer 53–4, 117, 123, 126–9, composite zonation scheme 119, 131, 132 130–2, 425–7 India 318–20 carbon isotope chemostratigraphy 126–9 Ireland 289 correlations of Ediacaran System and Period 18, Spain 232 115–35 sphaeromorphid 324 Marinoan glaciation 53–4, 126 Adelaide, Hallett Cove 68 Australia, Ediacaran System and Period Adelaide Rift Complex 115–22, 425 Bunyeroo–Wonoka Formation transition correlations with Officer Basin 127 137–9, 426 dating (Sr–Rb) 140 Centralian Superbasin 118, 125 generalized time–space diagram, correlations composite zonation scheme 131 between tectonic units 120 correlation methods and results 125–32 location maps 116, 118 time–space diagram 120 SE sector cumulative strata thickness 139 Vendian climatic indicators 17 stratigraphic correlation with Officer Basin 127 See also Adelaide Rift Complex; Flinders Ranges Stuart Shelf drill holes, correlations 117 Avalonian assemblages, Newfoundland 237–57, Sturtian (Umberatana) Group 116, 138 303–7, 427 Umberatana Group 116, 138 Africa backarc spreading, Altenfeld Formation 44–5, 47–8 Vendian climatic indicators 17 Baliana–Krol Group, NW Himalaya 319 see also Namibia Barut Formation, Iran 434 Aldanellidae 418 Bayesian analysis algal metaphyta, White Sea Region 271–4 eumetazoans 357–9 algal microfossils, White -
Bioactive Phytochemicals from Wild Arbutus Unedo L. Berries from Different Locations in Portugal: Quantification of Lipophilic Components
Int. J. Mol. Sci. 2015, 16, 14194-14209; doi:10.3390/ijms160614194 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Article Bioactive Phytochemicals from Wild Arbutus unedo L. Berries from Different Locations in Portugal: Quantification of Lipophilic Components Daniela F. S. Fonseca 1, Ângelo C. Salvador 1,2, Sónia A. O. Santos 2, Carla Vilela 2, Carmen S. R. Freire 2, Armando J. D. Silvestre 2,* and Sílvia M. Rocha 1,* 1 Organic Chemistry, Natural and Agro-Food Products (QOPNA), Department of Chemistry, University of Aveiro, 3810-193 Aveiro, Portugal; E-Mails: [email protected] (D.F.S.F.); [email protected] (A.C.S.) 2 Aveiro Institute of Materials (CICECO), Department of Chemistry, University of Aveiro, 3810-193 Aveiro, Portugal; E-Mails: [email protected] (S.A.O.S.); [email protected] (C.V.); [email protected] (C.S.R.F.) * Authors to whom correspondence should be addressed; E-Mails: [email protected] (A.J.D.S.); [email protected] (S.M.R.); Tel.: +351-234-370-711 (A.J.D.S.); +351-234-401-524 (S.M.R.); Fax: +351-234-370-084 (A.J.D.S. & S.M.R.). Academic Editor: Maurizio Battino Received: 24 April 2015 / Accepted: 11 June 2015 / Published: 23 June 2015 Abstract: The lipophilic composition of wild Arbutus unedo L. berries, collected from six locations in Penacova (center of Portugal), as well as some general chemical parameters, namely total soluble solids, pH, titratable acidity, total phenolic content and antioxidant activity was studied in detail to better understand its potential as a source of bioactive compounds. -
A Key Mammalian Cholesterol Synthesis Enzyme, Squalene Monooxygenase, Is Allosterically Stabilized by Its Substrate
A key mammalian cholesterol synthesis enzyme, squalene monooxygenase, is allosterically stabilized by its substrate Hiromasa Yoshiokaa, Hudson W. Coatesb, Ngee Kiat Chuab, Yuichi Hashimotoa, Andrew J. Brownb,1, and Kenji Ohganea,c,1 aInstitute for Quantitative Biosciences, The University of Tokyo, 113-0032 Tokyo, Japan; bSchool of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW 2052, Australia; and cSynthetic Organic Chemistry Laboratory, RIKEN, 351-0198 Saitama, Japan Edited by Brenda A. Schulman, Max Planck Institute of Biochemistry, Martinsried, Germany, and approved February 18, 2020 (received for review September 20, 2019) Cholesterol biosynthesis is a high-cost process and, therefore, is the cognate E3 ligase for SM (9, 10), catalyzing its ubiquitination tightly regulated by both transcriptional and posttranslational in the N100 region (11). negative feedback mechanisms in response to the level of cellular Despite its importance in cholesterol-accelerated degradation, cholesterol. Squalene monooxygenase (SM, also known as squalene the structure and function of the SM-N100 region has not been epoxidase or SQLE) is a rate-limiting enzyme in the cholesterol fully resolved. Thus far, biochemical analyses have revealed the biosynthetic pathway and catalyzes epoxidation of squalene. The presence of a reentrant loop anchoring SM to the ER membrane stability of SM is negatively regulated by cholesterol via its and an amphipathic helix required for cholesterol-accelerated N-terminal regulatory domain (SM-N100). In this study, using a degradation (7, 8), while X-ray crystallography has revealed the SM-luciferase fusion reporter cell line, we performed a chemical architecture of the catalytic domain of SM (12). However, the genetics screen that identified inhibitors of SM itself as up-regulators highly hydrophobic and disordered nature of the N100 region of SM. -
Traces of Locomotion of Ediacaran Macroorganisms
geosciences Article Traces of Locomotion of Ediacaran Macroorganisms Andrey Ivantsov 1,* , Aleksey Nagovitsyn 2 and Maria Zakrevskaya 1 1 Laboratory of the Precambrian Organisms, Borissiak Paleontological Institute, Russian Academy of Sciences, Moscow 117997, Russia; [email protected] 2 Arkhangelsk Regional Lore Museum, Arkhangelsk 163000, Russia; [email protected] * Correspondence: [email protected] Received: 21 August 2019; Accepted: 4 September 2019; Published: 11 September 2019 Abstract: We describe traces of macroorganisms in association with the body imprints of trace-producers from Ediacaran (Vendian) deposits of the southeastern White Sea region. They are interpreted as traces of locomotion and are not directly related to a food gathering. The complex remains belong to three species: Kimberella quadrata, Dickinsonia cf. menneri, and Tribrachidium heraldicum. They were found in three different burials. The traces have the form of narrow ridges or wide bands (grooves and linear depressions on natural imprints). In elongated Kimberella and Dickinsonia, the traces are stretched parallel to the longitudinal axis of the body and extend from its posterior end. In the case of the isometric Tribrachidium, the trace is directed away from the margin of the shield. A short length of the traces indicates that they were left by the organisms that were covered with the sediment just before their death. The traces overlaid the microbial mat with no clear signs of deformation under or around the traces. A trace substance, apparently, differed from the material of the bearing layers (i.e., a fine-grained sandstone or siltstone) and was not preserved on the imprints. This suggests that the traces were made with organic material, probably mucus, which was secreted by animals in a stressful situation. -
Cephalonega, a New Generic Name, and the System of Vendian Proarticulata A
ISSN 0031-0301, Paleontological Journal, 2019, Vol. 53, No. 5, pp. 447–454. © Pleiades Publishing, Ltd., 2019. Russian Text © The Author(s), 2019, published in Paleontologicheskii Zhurnal, 2019, No. 5, pp. 14–21. Cephalonega, A New Generic Name, and the System of Vendian Proarticulata A. Yu. Ivantsova, *, M. A. Fedonkina, A. L. Nagovitsynb, and M. A. Zakrevskayaa aBorissiak Paleontological Institute, Russian Academy of Sciences, Moscow, 117647 Russia bArkhangelsk Office, Russian Geographical Society, Russian Academy of Sciences, Arkhangelsk, 163001 Russia *e-mail:[email protected] Received December 29, 2017; revised November 9, 2018; accepted February 14, 2019 Abstract—Due to homonymy, a new name Cephalonega Fedonkin, nom. nov. was proposed for the genus of Vendian macroorganisms, Onega Fedonkin. The improved diagnosis of this genus and evidence that this genus belongs to Proarticulata, an extinct phylum of Metazoa, are given. A detailed characterization of the phylum and all Proarticulata classes is given for the first time. Keywords: Late Vendian, Ediacaran, Proarticulata, Vendiamorpha, Dipleurozoa, Cephalozoa, Onega, Ceph- alonega DOI: 10.1134/S0031030119050046 INTRODUCTION the genus and the description of the species were mod- In 1972 the first large locality of Ediacaran-type ified. In order to substantiate the systematical position fossils in the Upper Vendian natural outcrops in the of the taxon the refined characteristics of Proarticulata north-west of the East European Platform was discov- and subordinated high-rank taxa were formulated. ered on the Onega Peninsula along the banks of the Syuzma River (Keller et al., 1974). At the early stages DISCUSSION of studying the Syuzma locality, several impressions of a small organism were found and this organism was The phylum Proarticulata was distinguished in the described as the monotypical genus Onega Fedonkin, composition of the Vendian fauna on the basis of 1976 (Keller and Fedonkin, 1976). -
A Solution to Darwin's Dilemma: Differential Taphonomy of Ediacaran and Palaeozoic Non-Mineralised Discoidal Fossils
Provided by the author(s) and NUI Galway in accordance with publisher policies. Please cite the published version when available. Title A Solution to Darwin's Dilemma: Differential Taphonomy of Ediacaran and Palaeozoic Non-Mineralised Discoidal Fossils Author(s) MacGabhann, Breandán Anraoi Publication Date 2012-08-29 Item record http://hdl.handle.net/10379/3406 Downloaded 2021-09-26T20:57:04Z Some rights reserved. For more information, please see the item record link above. A Solution to Darwin’s Dilemma: Differential taphonomy of Palaeozoic and Ediacaran non- mineralised discoidal fossils Volume 1 of 2 Breandán Anraoi MacGabhann Supervisor: Dr. John Murray Earth and Ocean Sciences, School of Natural Sciences, NUI Galway August 2012 Differential taphonomy of Palaeozoic and Ediacaran non-mineralised fossils Table of Contents List of Figures ........................................................................................................... ix List of Tables ........................................................................................................... xxi Taxonomic Statement ........................................................................................... xxiii Acknowledgements ................................................................................................ xxv Abstract ................................................................................................................. xxix 1. Darwin’s Dilemma ............................................................................................... -
Nomenclature of Steroids
Pure&App/. Chern.,Vol. 61, No. 10, pp. 1783-1822,1989. Printed in Great Britain. @ 1989 IUPAC INTERNATIONAL UNION OF PURE AND APPLIED CHEMISTRY and INTERNATIONAL UNION OF BIOCHEMISTRY JOINT COMMISSION ON BIOCHEMICAL NOMENCLATURE* NOMENCLATURE OF STEROIDS (Recommendations 1989) Prepared for publication by G. P. MOSS Queen Mary College, Mile End Road, London El 4NS, UK *Membership of the Commission (JCBN) during 1987-89 is as follows: Chairman: J. F. G. Vliegenthart (Netherlands); Secretary: A. Cornish-Bowden (UK); Members: J. R. Bull (RSA); M. A. Chester (Sweden); C. LiCbecq (Belgium, representing the IUB Committee of Editors of Biochemical Journals); J. Reedijk (Netherlands); P. Venetianer (Hungary); Associate Members: G. P. Moss (UK); J. C. Rigg (Netherlands). Additional contributors to the formulation of these recommendations: Nomenclature Committee of ZUB(NC-ZUB) (those additional to JCBN): H. Bielka (GDR); C. R. Cantor (USA); H. B. F. Dixon (UK); P. Karlson (FRG); K. L. Loening (USA); W. Saenger (FRG); N. Sharon (Israel); E. J. van Lenten (USA); S. F. Velick (USA); E. C. Webb (Australia). Membership of Expert Panel: P. Karlson (FRG, Convener); J. R. Bull (RSA); K. Engel (FRG); J. Fried (USA); H. W. Kircher (USA); K. L. Loening (USA); G. P. Moss (UK); G. Popjiik (USA); M. R. Uskokovic (USA). Correspondence on these recommendations should be addressed to Dr. G. P. Moss at the above address or to any member of the Commission. Republication of this report is permitted without the need for formal IUPAC permission on condition that an acknowledgement, with full reference together with IUPAC copyright symbol (01989 IUPAC), is printed. -
Steroidal Triterpenes of Cholesterol Synthesis
Molecules 2013, 18, 4002-4017; doi:10.3390/molecules18044002 OPEN ACCESS molecules ISSN 1420-3049 www.mdpi.com/journal/molecules Review Steroidal Triterpenes of Cholesterol Synthesis Jure Ačimovič and Damjana Rozman * Centre for Functional Genomics and Bio-Chips, Faculty of Medicine, Institute of Biochemistry, University of Ljubljana, Zaloška 4, Ljubljana SI-1000, Slovenia; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +386-1-543-7591; Fax: +386-1-543-7588. Received: 18 February 2013; in revised form: 19 March 2013 / Accepted: 27 March 2013 / Published: 4 April 2013 Abstract: Cholesterol synthesis is a ubiquitous and housekeeping metabolic pathway that leads to cholesterol, an essential structural component of mammalian cell membranes, required for proper membrane permeability and fluidity. The last part of the pathway involves steroidal triterpenes with cholestane ring structures. It starts by conversion of acyclic squalene into lanosterol, the first sterol intermediate of the pathway, followed by production of 20 structurally very similar steroidal triterpene molecules in over 11 complex enzyme reactions. Due to the structural similarities of sterol intermediates and the broad substrate specificity of the enzymes involved (especially sterol-Δ24-reductase; DHCR24) the exact sequence of the reactions between lanosterol and cholesterol remains undefined. This article reviews all hitherto known structures of post-squalene steroidal triterpenes of cholesterol synthesis, their biological roles and the enzymes responsible for their synthesis. Furthermore, it summarises kinetic parameters of enzymes (Vmax and Km) and sterol intermediate concentrations from various tissues. Due to the complexity of the post-squalene cholesterol synthesis pathway, future studies will require a comprehensive meta-analysis of the pathway to elucidate the exact reaction sequence in different tissues, physiological or disease conditions.