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Exploring Interacting Influences on the Silicon Isotopic
Biogeosciences, 11, 1371–1391, 2014 Open Access www.biogeosciences.net/11/1371/2014/ doi:10.5194/bg-11-1371-2014 Biogeosciences © Author(s) 2014. CC Attribution 3.0 License. Exploring interacting influences on the silicon isotopic composition of the surface ocean: a case study from the Kerguelen Plateau N. Coffineau, C. L. De La Rocha, and P. Pondaven Institut Universitaire Européen de la Mer, CNRS UMR6539, Université de Bretagne Occidentale, Plouzané, France Correspondence to: N. Coffineau (nathalie.coffi[email protected]) Received: 28 June 2013 – Published in Biogeosciences Discuss.: 10 July 2013 Revised: 30 November 2013 – Accepted: 21 January 2014 – Published: 12 March 2014 Abstract. This study presents six new water column profiles Finally, the choice for the parameterisation of the mixing be- of the silicon isotopic composition (δ30Si) of dissolved sili- tween the ML and the WW in terms of δ30Si (i.e. constant or con (DSi) from the Atlantic and Indian sectors of the South- allowed to vary with the seasonal migration of the thermo- ern Ocean and a variable depth box model of silica cycling cline) is critical to take into account in box model simulations in the mixed layer that was constructed to illuminate the evo- of the silica biogeochemical cycle. Altogether, these results lution of surface ocean δ30Si over the full course of a year. suggest that as a paleoceanographic proxy, δ30Si may more In keeping with previous observations, δ30Si values ranged reflect the dominant mode of production of the BSi that is from +1.9 to +2.4 ‰ in the mixed layer (ML), +1.2 to exported (i.e. -
Coral Feeding on Microalgae Assessed with Molecular Trophic Markers
Molecular Ecology (2013) doi: 10.1111/mec.12486 Coral feeding on microalgae assessed with molecular trophic markers MIGUEL C. LEAL,*† CHRISTINE FERRIER-PAGES,‡ RICARDO CALADO,* MEGAN E. THOMPSON,† MARC E. FRISCHER† and JENS C. NEJSTGAARD† *Departamento de Biologia & CESAM, Universidade de Aveiro, Campus Universitario de Santiago, 3810-193 Aveiro, Portugal, †Skidaway Institute of Oceanography, 10 Ocean Science Circle, 31411 Savannah, GA, USA, ‡Centre Scientifique de Monaco, Avenue St-Martin, 98000 Monaco, Monaco Abstract Herbivory in corals, especially for symbiotic species, remains controversial. To investi- gate the capacity of scleractinian and soft corals to capture microalgae, we conducted controlled laboratory experiments offering five algal species: the cryptophyte Rhodo- monas marina, the haptophytes Isochrysis galbana and Phaeocystis globosa, and the diatoms Conticribra weissflogii and Thalassiosira pseudonana. Coral species included the symbiotic soft corals Heteroxenia fuscescens and Sinularia flexibilis, the asymbiotic scleractinian coral Tubastrea coccinea, and the symbiotic scleractinian corals Stylophora pistillata, Pavona cactus and Oculina arbuscula. Herbivory was assessed by end-point PCR amplification of algae-specific 18S rRNA gene fragments purified from coral tissue genomic DNA extracts. The ability to capture microalgae varied with coral and algal species and could not be explained by prey size or taxonomy. Herbivory was not detected in S. flexibilis and S. pistillata. P. globosa was the only algal prey that was never captured by any coral. Although predation defence mechanisms have been shown for Phaeocystis spp. against many potential predators, this study is the first to suggest this for corals. This study provides new insights into herbivory in symbiotic corals and suggests that corals may be selective herbivorous feeders. -
Efficiency of the Silicate Pump at a Coastal Oligotrophic Site in The
Biogeosciences, 2, 219–229, 2005 www.biogeosciences.net/bg/2/219/ Biogeosciences SRef-ID: 1726-4189/bg/2005-2-219 European Geosciences Union Efficiency of the silicate pump at a coastal oligotrophic site in the Mediterranean Sea K. Leblanc1, B. Queguiner´ 2, P. Raimbault2, and N. Garcia2 1College of Marine Studies, University of Delaware, 700 Pilottown Road, Lewes, DE 19958, USA 2Laboratoire d’Oceanographie´ et de Biogeochimie,´ CNRS, University of Aix-Marseille II, Campus de Luminy, 13288 Marseille Cedex 9, France Received: 31 March 2005 – Published in Biogeosciences Discussions: 9 May 2005 Revised: 15 August 2005 – Accepted: 16 August 2005 – Published: 29 August 2005 Abstract. A one-year survey of the sedimenting particulate depletion of silicic acid over the entire water column which material was conducted at the SOFi site located on the edge was observed by mid-April in a companion study (Leblanc et of the continental slope in the Gulf of Lions (Northwest- al., 2003) and may cause a severe Si limitation of the diatom ern Mediterranean) between September 1999 and December spring bloom in this oligotrophic region of the Gulf of Lions. 2000. The main focus of this paper was to establish an annual budget of biogenic silica export, to describe the seasonnal pattern of Si fluxes in relation to the organic and mineral C fluxes and to quantify the Si/C decoupling processes during 1 Introduction sedimentation. The pattern of the downward flux of BSi was partly typical with increased daily sedimentation rates during Even though continental margins represent only 8% of the spring followed by smaller peaks during summer. -
PROTISTS Shore and the Waves Are Large, Often the Largest of a Storm Event, and with a Long Period
(seas), and these waves can mobilize boulders. During this phase of the storm the rapid changes in current direction caused by these large, short-period waves generate high accelerative forces, and it is these forces that ultimately can move even large boulders. Traditionally, most rocky-intertidal ecological stud- ies have been conducted on rocky platforms where the substrate is composed of stable basement rock. Projec- tiles tend to be uncommon in these types of habitats, and damage from projectiles is usually light. Perhaps for this reason the role of projectiles in intertidal ecology has received little attention. Boulder-fi eld intertidal zones are as common as, if not more common than, rock plat- forms. In boulder fi elds, projectiles are abundant, and the evidence of damage due to projectiles is obvious. Here projectiles may be one of the most important defi ning physical forces in the habitat. SEE ALSO THE FOLLOWING ARTICLES Geology, Coastal / Habitat Alteration / Hydrodynamic Forces / Wave Exposure FURTHER READING Carstens. T. 1968. Wave forces on boundaries and submerged bodies. Sarsia FIGURE 6 The intertidal zone on the north side of Cape Blanco, 34: 37–60. Oregon. The large, smooth boulders are made of serpentine, while Dayton, P. K. 1971. Competition, disturbance, and community organi- the surrounding rock from which the intertidal platform is formed zation: the provision and subsequent utilization of space in a rocky is sandstone. The smooth boulders are from a source outside the intertidal community. Ecological Monographs 45: 137–159. intertidal zone and were carried into the intertidal zone by waves. Levin, S. A., and R. -
Microalgae Strain Catalogue
Microalgae strain catalogue A strain selection guide for microalgae users: cultivation and chemical characteristics for high added-value products CONTENTS 1. INTRODUCTION .......................................................................................... 4 2. Strain catalogue ......................................................................................... 5 Anabaena cylindrica ........................................................................................... 6 Arthrospira platensis .......................................................................................... 8 Botryococcus braunii ........................................................................................ 10 Chlorella luteoviridis ......................................................................................... 12 Chlorella sorokiniana ........................................................................................ 14 Chlorella vulgaris .............................................................................................. 16 Dunaliella salina ............................................................................................... 18 Dunaliella tertiolecta ......................................................................................... 20 Haematococcus pluvialis .................................................................................. 22 Microcystis aeruginosa ..................................................................................... 24 Nannochloropsis occulata ............................................................................... -
21 Pathogens of Harmful Microalgae
21 Pathogens of Harmful Microalgae RS. Salomon and I. Imai 2L1 Introduction Pathogens are any organisms that cause disease to other living organisms. Parasitism is an interspecific interaction where one species (the parasite) spends the whole or part of its life on or inside cells and tissues of another living organism (the host), from where it derives most of its food. Parasites that cause disease to their hosts are, by definition, pathogens. Although infection of metazoans by other metazoans and protists are the more fre quently studied, there are interactions where both host and parasite are sin gle-celled organisms. Here we describe such interactions involving microal gae as hosts. The aim of this chapter is to review the current status of research on pathogens of harmful microalgae and present future perspec tives within the field. Pathogens with the ability to impair and kill micro algae include viruses, bacteria, fungi and a number of protists (see reviews by Elbrachter and Schnepf 1998; Brussaard 2004; Park et al. 2004; Mayali and Azam 2004; Ibelings et al. 2004). Valuable information exists from non-harm ful microalgal hosts, and these studies will be referred to throughout the text. Nevertheless, emphasis is given to cases where hosts are recognizable harmful microalgae. 21.2 Viruses Viruses and virus-like particles (VLPs) have been found in more than 50 species of eukaryotic microalgae, and several of them have been isolated in laboratory cultures (Brussaard 2004; Nagasaki et al. 2005). These viruses are diverse both in size and genome type, and some of them infect harmful algal bloom (HAB)-causing species (Table 21.1). -
Annual 2016-2017
ANNUAL 2016-2017 REPORT UCSB MARINE SCIENCE INSTITUTE | UC SANTA BARBARA Table of Contents Director’s Statement 3 Organizational Charts 5 Administrative Staff 6 Centers and Units 7 Other Projects & Activities 8 Seminars, Workshops, Conferences, and Meetings 9 Coastal Research Center 11 Marine Biotechnology Center 13 Ocean and Coastal Policy Center 20 UC Natural Reserve System 21 Analytical Laboratory 23 Education and Outreach 24 Awards Administered 25 Awards 26 Research Summaries 36 Space 129 Statistical Summary 135 Research Support Summary 136 Statistical Summary 2015-2016 138 Five-Year Research Support Summary 140 Funding Agencies 143 MSI Advisory Committee, 145 Administrative & Technical Staff Principal Investigators 148 2 DIRECTor’s STATEMENT 3 Director’s Statement As we move towards MSI’s 50th anniversary in 2019 the Marine Science Institute our scientists continue on a trajectory of engaging in cutting edge research and of solving pressing problems in ocean science. Our research portfolio continues to diversify with an ever growing set of funders representing a very large array of government agencies, private industry, non-profit foundations and individuals. Discoveries by MSI researchers are revealing wondrous new aspects of ocean systems from new insights into the ecology of coral reefs to the effects of ocean acidification. This new knowledge continues to improve our basic understanding of the seas and the wide range of services that they provide to society. I am proud of the contribution that our scientist make to society’s knowledge as these discoveries continually teach us how to be better stewards of the ocean realm. While ocean discovery is key to our mission, MSI researchers also act on this knowledge to solve pressing issues associated with the constructive use of ocean resources. -
Incorporating a Molecular Antenna in Diatom Microalgae Cells Enhances
www.nature.com/scientificreports OPEN Incorporating a molecular antenna in diatom microalgae cells enhances photosynthesis Gabriella Leone1,2, Gabriel De la Cruz Valbuena3, Stefania Roberta Cicco4, Danilo Vona1, Emiliano Altamura1, Roberta Ragni1, Egle Molotokaite2, Michela Cecchin5, Stefano Cazzaniga5, Matteo Ballottari5, Cosimo D’Andrea2,3, Guglielmo Lanzani2,3* & Gianluca Maria Farinola1* Diatom microalgae have great industrial potential as next-generation sources of biomaterials and biofuels. Efective scale-up of their production can be pursued by enhancing the efciency of their photosynthetic process in a way that increases the solar-to-biomass conversion yield. A proof-of- concept demonstration is given of the possibility of enhancing the light absorption of algae and of increasing their efciency in photosynthesis by in vivo incorporation of an organic dye which acts as an antenna and enhances cells’ growth and biomass production without resorting to genetic modifcation. A molecular dye (Cy5) is incorporated in Thalassiosira weissfogii diatom cells by simply adding it to the culture medium and thus flling the orange gap that limits their absorption of sunlight. Cy5 enhances diatoms’ photosynthetic oxygen production and cell density by 49% and 40%, respectively. Cy5 incorporation also increases by 12% the algal lipid free fatty acid (FFA) production versus the pristine cell culture, thus representing a suitable way to enhance biofuel generation from algal species. Time-resolved spectroscopy reveals Förster Resonance Energy Transfer (FRET) from Cy5 to algal chlorophyll. The present approach lays the basis for non-genetic tailoring of diatoms’ spectral response to light harvesting, opening up new ways for their industrial valorization. Drastic changes in climate and reduction in the availability of raw chemical materials are drawing academic and industrial research, as a matter of considerable urgency, towards photosynthetic organisms as living factories for the large-scale production of fuels and active chemical products. -
Carbon-Based Ocean Productivity and Phytoplankton Physiology from Space Michael J
GLOBAL BIOGEOCHEMICAL CYCLES, VOL. 19, GB1006, doi:10.1029/2004GB002299, 2005 Carbon-based ocean productivity and phytoplankton physiology from space Michael J. Behrenfeld,1,2 Emmanuel Boss,3 David A. Siegel,4 and Donald M. Shea5 Received 21 May 2004; revised 19 October 2004; accepted 2 November 2004; published 25 January 2005. [1] Ocean biogeochemical and ecosystem processes are linked by net primary production (NPP) in the ocean’s surface layer, where inorganic carbon is fixed by photosynthetic processes. Determinations of NPP are necessarily a function of phytoplankton biomass and its physiological status, but the estimation of these two terms from space has remained an elusive target. Here we present new satellite ocean color observations of phytoplankton carbon (C) and chlorophyll (Chl) biomass and show that derived Chl:C ratios closely follow anticipated physiological dependencies on light, nutrients, and temperature. With this new information, global estimates of phytoplankton growth rates (m) and carbon-based NPP are made for the first time. Compared to an earlier chlorophyll-based approach, our carbon- based values are considerably higher in tropical oceans, show greater seasonality at middle and high latitudes, and illustrate important differences in the formation and demise of regional algal blooms. This fusion of emerging concepts from the phycological and remote sensing disciplines has the potential to fundamentally change how we model and observe carbon cycling in the global oceans. Citation: Behrenfeld, M. J., E. Boss, D. A. Siegel, and D. M. Shea (2005), Carbon-based ocean productivity and phytoplankton physiology from space, Global Biogeochem. Cycles, 19, GB1006, doi:10.1029/2004GB002299. -
Deep Maxima of Phytoplankton Biomass, Primary Production and Bacterial Production in the Mediterranean Sea
Biogeosciences, 18, 1749–1767, 2021 https://doi.org/10.5194/bg-18-1749-2021 © Author(s) 2021. This work is distributed under the Creative Commons Attribution 4.0 License. Deep maxima of phytoplankton biomass, primary production and bacterial production in the Mediterranean Sea Emilio Marañón1, France Van Wambeke2, Julia Uitz3, Emmanuel S. Boss4, Céline Dimier3, Julie Dinasquet5, Anja Engel6, Nils Haëntjens4, María Pérez-Lorenzo1, Vincent Taillandier3, and Birthe Zäncker6,7 1Department of Ecology and Animal Biology, Universidade de Vigo, 36310 Vigo, Spain 2Mediterranean Institute of Oceanography, Aix-Marseille Université, CNRS, Université de Toulon, CNRS, IRD, MIO UM 110, 13288 Marseille, France 3Laboratoire d’Océanographie de Villefranche, Sorbonne Université, CNRS, 06230 Villefranche-sur-Mer, France 4School of Marine Sciences, University of Maine, Orono, Maine, USA 5Scripps Institution of Oceanography, University of California, San Diego, San Diego, California, USA 6GEOMAR, Helmholtz Centre for Ocean Research Kiel, 24105 Kiel, Germany 7The Marine Biological Association of the United Kingdom, Plymouth, PL1 2PB, United Kingdom Correspondence: Emilio Marañón ([email protected]) Received: 7 July 2020 – Discussion started: 20 July 2020 Revised: 5 December 2020 – Accepted: 8 February 2021 – Published: 15 March 2021 Abstract. The deep chlorophyll maximum (DCM) is a ubiq- 10–15 mgCm−3 at the DCM. As a result of photoacclima- uitous feature of phytoplankton vertical distribution in strati- tion, there was an uncoupling between chlorophyll a-specific fied waters that is relevant to our understanding of the mech- and carbon-specific productivity across the euphotic layer. anisms that underpin the variability in photoautotroph eco- The ratio of fucoxanthin to total chlorophyll a increased physiology across environmental gradients and has impli- markedly with depth, suggesting an increased contribution cations for remote sensing of aquatic productivity. -
Pigments, Elemental Composition and Stoichiometry of Particulate Matter
Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | Biogeosciences Discuss., 11, 8259–8324, 2014 www.biogeosciences-discuss.net/11/8259/2014/ doi:10.5194/bgd-11-8259-2014 BGD © Author(s) 2014. CC Attribution 3.0 License. 11, 8259–8324, 2014 This discussion paper is/has been under review for the journal Biogeosciences (BG). Pigments, elemental Please refer to the corresponding final paper in BG if available. composition and stoichiometry of Pigments, elemental composition (C, N, P, particulate matter Si) and stoichiometry of particulate M. Lasbleiz et al. matter, in the naturally iron fertilized Title Page region of Kerguelen in the Southern Abstract Introduction Ocean Conclusions References Tables Figures M. Lasbleiz1, K. Leblanc1, S. Blain2, J. Ras3,4, V. Cornet-Barthaux1, S. Hélias Nunige1, and B. Quéguiner1 J I 1Aix-Marseille Université Université de Toulon, CNRS/INSU, IRD, MIO, UM 110, 13288, Marseille, Cedex 09, France J I 2 Laboratoire d’Océanographie Microbienne (LOMIC), UMR7621, CNRS, Université Pierre et Back Close Marie Curie, 66650, Banyuls-sur-mer, France 3Laboratoire d’Océanographie de Villefranche, UMR7093, CNRS, 06230 Villefranche-sur-Mer, Full Screen / Esc France 4 Université Pierre et Marie Curie (Paris-6), Unité Mixte de Recherche 7093, Laboratoire Printer-friendly Version d’Océanographie de Villefranche-sur-Mer, 06230, Villefranche-sur-Mer, France Interactive Discussion 8259 Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | Received: 20 May 2014 – Accepted: 20 May 2014 – Published: 5 June 2014 Correspondence to: M. Lasbleiz ([email protected]) BGD Published by Copernicus Publications on behalf of the European Geosciences Union. 11, 8259–8324, 2014 Pigments, elemental composition and stoichiometry of particulate matter M. -
Dry Weight and Cell Density of Individual Algal and Cyanobacterial Cells for Algae
Dry Weight and Cell Density of Individual Algal and Cyanobacterial Cells for Algae Research and Development _______________________________________ A Thesis presented to the Faculty of the Graduate School at the University of Missouri-Columbia _______________________________________________________ In Partial Fulfillment of the Requirements for the Degree Master of Science _____________________________________________________ by WENNA HU Dr. Zhiqiang Hu, Thesis Supervisor July 2014 The undersigned, appointed by the Dean of the Graduate School, have examined the thesis entitled Dry Weight and Cell Density of Individual Algal and Cyanobacterial Cells for Algae Research and Development presented by Wenna Hu, a candidate for the degree of Master of Science, and hereby certify that, in their opinion, it is worthy of acceptance. Professor Zhiqiang Hu Professor Enos C. Inniss Professor Pamela Brown DEDICATION I dedicate this thesis to my beloved parents, whose moral encouragement and support help me earn my Master’s degree. Acknowledgements Foremost, I would like to express my sincere gratitude to my advisor and mentor Dr. Zhiqiang Hu for the continuous support of my graduate studies, for his patience, motivation, enthusiasm, and immense knowledge. His guidance helped me in all the time of research and writing of this thesis. Without his guidance and persistent help this thesis would not have been possible. I would like to thank my committee members, Dr. Enos Inniss and Dr. Pamela Brown for being my graduation thesis committee. Their guidance and enthusiasm of my graduate research is greatly appreciated. Thanks to Daniel Jackson in immunology core for the flow cytometer operation training, and Arpine Mikayelyan in life science center for fluorescent images acquisition.