The Life History of Damaraland Mole-Rats Fukomys Damarensis: Growth, Ageing and Behaviour

Total Page:16

File Type:pdf, Size:1020Kb

The Life History of Damaraland Mole-Rats Fukomys Damarensis: Growth, Ageing and Behaviour The Life History of Damaraland Mole-rats Fukomys damarensis: Growth, Ageing and Behaviour Jack Thorley A thesis submitted to the University of Cambridge in application for the degree of Doctor of Philosophy Jesus College July 2018 i ii The Life History of Damaraland Mole-rats Fukomys damarensis: Growth, Ageing and Behaviour Jack Thorley SUMMARY The social mole-rats have often been typecast as extreme examples of mammalian sociality. With their pronounced reproductive skew, status-related contrasts in lifespan and morphology, and the suggestion of a division of labour amongst helpers, mole-rat societies have repeatedly been likened to the structurally complex societies of some eusocial insects. However, because few studies of mole-rats have quantified individual variation in growth and behaviour across long periods of development, it has remained unclear the extent to which mole-rat societies, and the features of individuals within them, should be considered unique amongst social vertebrates. In this thesis, I examine life history variation in Damaraland mole-rats Fukomys damarensis from three perspectives- growth, behaviour, and ageing- to explore how individual developmental trajectories contribute to, and are influenced by, the structure of mole-rat societies. First, I use a large longitudinal dataset to test for the presence of behavioural specialisation in non-breeding mole-rat helpers. I find no indication of individual specialisation in cooperative activities. Instead, individual differences in helping behaviour are largely the result of age-related changes in the extent to which individuals commit to all forms of helping (Chapter 3); refuting the notion of helper castes. I then focus on the variation in growth across non-breeders, developing a novel biphasic model to accurately quantify sex differences in growth and explore the influence of social effects on growth trajectories (Chapter 4). Despite the proposition of intense intrasexual competition in mole-rat societies, there was no clear signature of sex-specific competition on helper growth trajectories. A more conspicuous form of socially-mediated growth in mole-rats is the secondary growth spurt displayed by females that have acquired the dominant breeding position, causing them to become larger and more elongated. By experimentally controlling reproduction in age-matched siblings, I show that rather than being stimulated by the removal from reproductive suppression, this adaptive morphological divergence is achieved through a lengthening of the lumbar vertebrae when breeding is commenced (Chapter 5). With i contrasts in size and shape following the acquisition of the breeding role, this status-related growth pattern shares similarities with growth in naked mole-rats and other social vertebrates. Breeders also show a twofold greater lifespan than non-breeders in Fukomys mole- rats, prompting the suggestion that the transition to dominance also sets individuals onto a slower ageing trajectory. To date, there is little evidence to support a physiological basis to lifespan extension in breeders. This assertion is bolstered by the absence of longer telomeres or slower rates of telomere attrition in breeding females compared to non-breeding females residing in groups (Chapter 6), each of which might be expected if breeders age more slowly. I argue that previous studies exploring status-related ageing in captive Fukomys mole-rats have overlooked the importance of demographic processes (and associated behavioural influences) on mortality schedules. Irrespective of the proximate basis of the longer lifespan of breeders, at an interspecific level the social mole-rats are unusually long-lived for their size. A recent large-scale comparative analysis concluded that prolonged lifespan is a general characteristic of all mammalian cooperative breeders, but this conclusion is premature, as in most of the major clades containing both cooperative and non-cooperative species there is no consistent trend towards lifespan extension in cooperative species (Chapter 7). In the case of mole-rats, it seems more likely that their exceptional longevity arises principally from their subterranean habits and related reductions in extrinsic mortality. Overall, these findings demonstrate that cooperative breeding has important consequences for individual life histories, but there is no strong basis for the claim that Damaraland mole-rat societies are markedly different in form than other cooperative breeding societies. ii PREFACE This thesis is the result of my own work, and contains no work done in collaboration except where stated at the commencement of each chapter. The text does not exceed 60,000 words. No part of this thesis has been submitted to any other university in application for a higher degree. Jack Thorley July 2018 iii PAPERS ARISING FROM THESIS Thorley, J., Mendonça, R., Vullioud, P., Torrents-Ticó, M, Zöttl, M., Gaynor, D., and T. Clutton-Brock. 2018. No task specialisation among helpers in Damaraland mole-rats. Animal Behaviour 143: 9-24. doi: 10.1098/rspb.2018.0897 Thorley, J., Katlein, N., Goddard, K., Zöttl, M., and T. Clutton-Brock. 2018. Reproduction triggers adaptive increases in body size in female mole-rats. Proceeding of the Royal Society of London B 285: 20180897. doi: 10.1098/rspb.2018.0897 OTHER RELATED CONTRIBUTIONS Zöttl, M., Thorley, J., Gaynor, D., Bennett, N.C., and T. Clutton-Brock. 2016. Variation in growth of Damaraland mole-rats is explained by competition rather than by functional specialization for different tasks. Biology Letters 12: 20160820. doi: /10.1098/rsbl.2016.0820 Thorley, J., and T. Clutton-Brock. 2017 Kalahari vulture declines, through the eyes of meerkats. Ostrich: Journal of African Ornithology. Ostrich 88(2): 177-181. doi: 10.2989/00306525.2016.1257516 iv ACKNOWLEDGEMENTS My first thanks go to my supervisor, Professor Tim Clutton-Brock, for providing me with a stimulating environment in which to conduct my PhD, in Cambridge and in the Kalahari. I admire Tim a great deal for the intellectual contributions he has made to behavioural ecology, and it has been a pleasure to be a member of the ‘Large Animal Research Group’. From him I have learnt a great deal about the method of scientific enquiry into the natural world, and the importance of clarity and precision in formulating hypotheses and constructing arguments. Above all, he has instilled in me the importance of iterations to the writing process. A result I hope to have eradicated the “streams of consciousness” that pervaded earlier versions of my thesis to leave an insightful body of work. In LARG, I have been fortunate to work as part of a close-knit community of researchers- the LARGies. It would be over-indulgent to write something about each of them, but I am nonetheless grateful to AJ, Arik, Chris, Corina, Constance, Dieter, Dom, Mark, Monica, Peter and Teja for the insightful chats at lunch, and the less coherent chats in pubs throughout my tenure. All have had an instructive role in my learning and contributed to my enjoyment in Cambridge. I reserve special mention for Markus and Philippe, members of the mole-rat team with whom I have worked closely. Along with Rute Mendonça, they have invested much time and energy into the mole-rat project to ensure that is runs as smoothly as possible. Coordinating a project from 9,000km away is always a challenging and thankless task, but where it can be thanked it should. For a brief period in my thesis I was based in Glasgow to undertake telomere work in the lab of Pat Monaghan. Pat was a wonderful host and I am thankful to her lab for the warm environment they provided to me. While there, Rob Gillespie was a fantastic mentor and source of much entertainment through the hours of pipetting. My telomeres would have shortened exceptionally fast without his help. Whilst Cambridge has been a wonderful base for a PhD, it is the time spent in the South Africa that I will remember most vividly and cherish most fondly. As Niko Tinbergen notes in his Curious Naturalists “it is only natural for a man to have occasional doubts about the value of what he is doing”. Such doubts have certainly surfaced in me from time to time throughout my studies. But to return to the Kalahari each time was to feel refreshed and reinvigorated. It is a mesmerising place, beautiful in its harshness and deeply affecting in its enormity. Each visit to the Kalahari would reaffirm my decision to pursue an ecologically-oriented career. The intellectual gains provided some validation, but more fundamental is that feeling of intense kinship with a place that comes with extended fieldwork, living not with the landscape, but in it. The nights trapping mole-rats under a quicksilver milky way; the early morning hoar frosts; the metallic chattering of the sparrow-weavers; the blood-stained sunsets; the calms before the storms. I have been immensely lucky and will miss it all. v Yet for all its remoteness, the desert was a place of friendships, and there are many people at the Kalahari Meerkat Project who I am fortunate to have met. Many afforded me their time and patience, their skills, their jokes. Some indulged me with their cookery skills, and one even gave me their affection. In particular, I would like to thank Dave Gaynor for his hospitality and infectious enthusiasm for the natural world. He was a great sounding board and I would always enjoy nipping up to the ‘dog-house’ for a coffee. Nanine, for her warmth, and Bracken for his optimism and boundless energy- I’m sorry I never found that Lego piece you were missing. Tim Vink was always of great help with his technological and mechanical wizardry, second only to his skills at Braaing. And to the scores of meerkat volunteers with which I shared the place, Baie Danke. Looking back at the earliest photos now it is alarming just how many people I met across my PhD.
Recommended publications
  • Kin Recognition in Protists and Other Microbes
    Kin Recognition in Protists and Other Microbes Kin Recognition in Protists and Other Microbes: Genetics, Evolution, Behavior and Health By Guillermo Paz-y-Miño-C and Avelina Espinosa Kin Recognition in Protists and Other Microbes: Genetics, Evolution, Behavior and Health By Guillermo Paz-y-Miño-C, Avelina Espinosa This book first published 2018 Cambridge Scholars Publishing Lady Stephenson Library, Newcastle upon Tyne, NE6 2PA, UK British Library Cataloguing in Publication Data A catalogue record for this book is available from the British Library Copyright © 2018 by Guillermo Paz-y-Miño-C, Avelina Espinosa All rights for this book reserved. No part of this book may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means, electronic, mechanical, photocopying, recording or otherwise, without the prior permission of the copyright owner. ISBN (10): 1-5275-0764-5 ISBN (13): 978-1-5275-0764-7 TABLE OF CONTENTS Acknowledgements ................................................................................... vii Preface ...................................................................................................... viii Chapter One ................................................................................................. 1 Kin Recognition: Synopsis and the Advent of Protists Models Chapter Two .............................................................................................. 14 The Genetics of Kin Recognition: From Many Cells to Single Cells Chapter Three ...........................................................................................
    [Show full text]
  • Research Project Summmary Main Research
    Research project summmary Main research fields: zoology and reproductive physiology specialization fields: Animal reproduction, Behavioural ecology, Behavioural physiology, sociobiology. My research interests focus mainly on the sociobiology of African rodent moles (Bathyergidae) and in particular the extrinsic and intrinsic factors that have led to the evolution of sociality in this remarkable endemic African family. My research group is fundamentally interested in elucidating the modes and mechanisms that are responsible for reproductive suppression in the non-reproductive females of the various species. Research is currently being directed at the neuroendocrine and molecular levels to elucidate the extent, nature and location of GnRH suppression. We are also interested in the photic and thermic input in the control of reproduction in seasonally reproducing mole-rats and the potential lack of a role in aseasonally breeding bathyergids. Long term population studies on social mole-rats from mesic and xeric environments are underway. These studies are providing empirical data on the spatial distribution of colonies, longevities, factors restricting and promoting dispersal, vagility, foraging methods and lifetime reproductive success. We are interested in the genetic relatedness of colonies and also the type of paternal skew operational in the social genera. This work is being carried out in collaboration with Dr Chris Faulkes at Queen Mary and Westfield College, London. Students currently under supervision MSc (research) 1. Ms. Kemba Butler Neuroendocrinology of induced ovulation in the highveld mole-rat (Cryptomys hottentotus pretoriae) 2. Mr. Andre Prins What makes a good helper? A behavioural study of cooperation in Damaraland mole-rats (Fukomys damarensis). 3. Mr. Josh Sarli Seasonal Reproductive Cycle and Parasite Burden of Two Small Mammals from Saudi Arabia.
    [Show full text]
  • Lepeletier) (Anthophila
    Acta Biol. Par., Curitiba, 48 (1-2): 21-31. 2019 21 Additions to morphology and nesting biology of a neotropical cetridine bee, Melacentris dorsata (Lepeletier) (Anthophila) Adições à morfologia e à biologia da nidificação de uma espécie neotropical de Centridini, Melanocentris dorsata (Lepeletier) (Anthophila) SEBASTIÃO LAROCA1 SANDOR CHRISTIANO BUYS2 & PAUL DECELLES3 The name Melacentris was created by MOURE (1995) to accomodate a group of bee previously called as Melanocentris, since this name was a synonymous of Ptilotopus due to the designation by SANDHOUSE (1943) of Centris atra (which is a Ptilotopus) as the type species of Melanocentris. In our paper (LAROCA, REYNAUD DOS SANTOS & SCHWARTZ FILHO, 1993) in which we studied several life history aspects of this species, we used the old name of this species, Melanocentris dorsata. Among several aspects, we postulated that Ptilotopus and Melanocentris together are a monophylectic group, Ptilotopus being a Melacentris-derived group (called by us in that occasion as Melanocentris). Our suspecion was based on morphological similarities amoung the groups and in the fact 1 Professor Sênior do setor de Ciências Biológica da Universidade Federal do Paraná (Curitiba, PR). E- mail: [email protected]. 1 e 2 colaboradores do Laboratório de Biodiversidade Entomológica do Instituto Oswaldo Cruz (RJ), 3 Professor of Biology at Johnson County Community College, Overland Park, Kansas (USA). 22 Acta Biol. Par., Curitiba, 48 (1-2): 21-31. 2019. that besides Ptilotopus only one species — Melacentris thoracica (Lepelitier) — constructs its nest in arboreal nests of termites. Centris is a relatively diversified genus of medium to large bees. In neotropical sites they are quiet common in the Brazilian “cerrado” (a type of savanna) and other open vegetations as well as in forest habitats.
    [Show full text]
  • Genome Sequences of Tropheus Moorii and Petrochromis Trewavasae, Two Eco‑Morphologically Divergent Cichlid Fshes Endemic to Lake Tanganyika C
    www.nature.com/scientificreports OPEN Genome sequences of Tropheus moorii and Petrochromis trewavasae, two eco‑morphologically divergent cichlid fshes endemic to Lake Tanganyika C. Fischer1,2, S. Koblmüller1, C. Börger1, G. Michelitsch3, S. Trajanoski3, C. Schlötterer4, C. Guelly3, G. G. Thallinger2,5* & C. Sturmbauer1,5* With more than 1000 species, East African cichlid fshes represent the fastest and most species‑rich vertebrate radiation known, providing an ideal model to tackle molecular mechanisms underlying recurrent adaptive diversifcation. We add high‑quality genome reconstructions for two phylogenetic key species of a lineage that diverged about ~ 3–9 million years ago (mya), representing the earliest split of the so‑called modern haplochromines that seeded additional radiations such as those in Lake Malawi and Victoria. Along with the annotated genomes we analysed discriminating genomic features of the study species, each representing an extreme trophic morphology, one being an algae browser and the other an algae grazer. The genomes of Tropheus moorii (TM) and Petrochromis trewavasae (PT) comprise 911 and 918 Mbp with 40,300 and 39,600 predicted genes, respectively. Our DNA sequence data are based on 5 and 6 individuals of TM and PT, and the transcriptomic sequences of one individual per species and sex, respectively. Concerning variation, on average we observed 1 variant per 220 bp (interspecifc), and 1 variant per 2540 bp (PT vs PT)/1561 bp (TM vs TM) (intraspecifc). GO enrichment analysis of gene regions afected by variants revealed several candidates which may infuence phenotype modifcations related to facial and jaw morphology, such as genes belonging to the Hedgehog pathway (SHH, SMO, WNT9A) and the BMP and GLI families.
    [Show full text]
  • The Treeness of the Tree of Historical Trees of Life
    RESEARCH ARTICLE The treeness of the tree of historical trees of life 1 2 3 1 Marie Fisler , CeÂdric CreÂmière , Pierre Darlu , Guillaume LecointreID * 1 UMR 7205 CNRS-MNHN-SU-EPHE « Institut de SysteÂmatique, Evolution et Biodiversite », deÂpartement « Origines & E volution », MuseÂum National d'Histoire Naturelle, Paris, France, 2 MuseÂe d'Histoire Naturelle du Havre, Place du vieux marcheÂ, Le Havre, France, 3 UMR 7206 CNRS-MNHN-UPD « Eco-anthropologie et Ethnobiologie », deÂpartement « Hommes, Nature et SocieÂteÂs », MuseÂum National d'Histoire Naturelle, Paris, France a1111111111 * [email protected] a1111111111 a1111111111 a1111111111 Abstract a1111111111 This paper compares and categorizes historical ideas about trees showing relationships among biological entities. The hierarchical structure of a tree is used to test the global con- sistency of similarities among these ideas; in other words we assess the ªtreenessº of the OPEN ACCESS tree of historical trees. The collected data are figures and ideas about trees showing rela- Citation: Fisler M, CreÂmière C, Darlu P, Lecointre G tionships among biological entities published or drawn by naturalists from 1555 to 2012. (2020) The treeness of the tree of historical trees of They are coded into a matrix of 235 historical trees and 141 descriptive attributes. From the life. PLoS ONE 15(1): e0226567. https://doi.org/ most parsimonious ªtreeº of historical trees, treeness is measured by consistency index, 10.1371/journal.pone.0226567 retention index and homoplasy excess ratio. This tree is used to create sets or categories of Editor: Marc Robinson-Rechavi, Universite de trees, or to study the circulation of ideas. From an unrooted network of historical trees, tree- Lausanne Faculte de biologie et medecine, ness is measured by the delta-score.
    [Show full text]
  • Paternity of Subordinates Raises Cooperative Effort in Cichlids
    Paternity of Subordinates Raises Cooperative Effort in Cichlids Rick Bruintjes1,2*, Danielle Bonfils1, Dik Heg1,3, Michael Taborsky1 1 Department of Behavioural Ecology, Institute of Ecology and Evolution, University of Bern, Hinterkappelen, Switzerland, 2 School of Biological Sciences, University of Bristol, Bristol, United Kingdom, 3 Institute of Social and Preventive Medicine (ISPM), University of Bern, Bern, Switzerland Abstract Background: In cooperative breeders, subordinates generally help a dominant breeding pair to raise offspring. Parentage studies have shown that in several species subordinates can participate in reproduction. This suggests an important role of direct fitness benefits for cooperation, particularly where groups contain unrelated subordinates. In this situation parentage should influence levels of cooperation. Here we combine parentage analyses and detailed behavioural observations in the field to study whether in the highly social cichlid Neolamprologus pulcher subordinates participate in reproduction and if so, whether and how this affects their cooperative care, controlling for the effect of kinship. Methodology/Principal Findings: We show that: (i) male subordinates gained paternity in 27.8% of all clutches and (ii) if they participated in reproduction, they sired on average 11.8% of young. Subordinate males sharing in reproduction showed more defence against experimentally presented egg predators compared to subordinates not participating in reproduction, and they tended to stay closer to the breeding shelter. No effects of relatedness between subordinates and dominants (to mid-parent, dominant female or dominant male) were detected on parentage and on helping behaviour. Conclusions/Significance: This is the first evidence in a cooperatively breeding fish species that the helping effort of male subordinates may depend on obtained paternity, which stresses the need to consider direct fitness benefits in evolutionary studies of helping behaviour.
    [Show full text]
  • Functional, Morphological, and Evolutionary Characterization of Hearing in Subterranean, Eusocial African Mole-Rats
    Article Functional, Morphological, and Evolutionary Characterization of Hearing in Subterranean, Eusocial African Mole-Rats Graphical Abstract Authors Sonja J. Pyott, Marcel van Tuinen, Laurel A. Screven, ..., Joseph Santos-Sacchi, Amanda M. Lauer, Thomas J. Park Correspondence [email protected] In Brief Pyott et al. attribute comparatively poor hearing in African naked and Damaraland mole-rats to lack of cochlear amplification, disrupted hair bundles, and hair bundle proteins bearing deafness- associated amino acid substitutions. Positive selection in some bundle proteins suggests altered hearing is adaptive to subterranean and eusocial lifestyles. Highlights d Hearing is comparatively poor in African naked and Damaraland mole-rats d These mole-rats lack cochlear amplification and have disrupted hair bundles d Hair bundle proteins bear deafness-associated amino acid substitutions d Positive selection in some bundle proteins suggests altered hearing is adaptive Pyott et al., 2020, Current Biology 30, 1–13 November 16, 2020 ª 2020 Elsevier Inc. https://doi.org/10.1016/j.cub.2020.08.035 ll Please cite this article in press as: Pyott et al., Functional, Morphological, and Evolutionary Characterization of Hearing in Subterranean, Eusocial Af- rican Mole-Rats, Current Biology (2020), https://doi.org/10.1016/j.cub.2020.08.035 ll Article Functional, Morphological, and Evolutionary Characterization of Hearing in Subterranean, Eusocial African Mole-Rats Sonja J. Pyott,1,9,* Marcel van Tuinen,1 Laurel A. Screven,2 Katrina M. Schrode,2 Jun-Ping Bai,3 Catherine M. Barone,4 Steven D. Price,5 Anna Lysakowski,5 Maxwell Sanderford,6 Sudhir Kumar,6,7 Joseph Santos-Sacchi,8 Amanda M.
    [Show full text]
  • The Use of Different Sensory Modalities in Predator Discrimination
    Behav Ecol Sociobiol (2017) 71: 143 DOI 10.1007/s00265-017-2371-8 ORIGINAL ARTICLE Smell or vision? The use of different sensory modalities in predator discrimination Stefan Fischer1,2,3 & Evelyne Oberhummer1 & Filipa Cunha-Saraiva1,4 & Nina Gerber1,5 & Barbara Taborsky1 Received: 6 November 2016 /Revised: 19 August 2017 /Accepted: 28 August 2017 /Published online: 8 September 2017 # The Author(s) 2017. This article is an open access publication Abstract to a standardized threat stimulus combined with either preda- Theory predicts that animals should adjust their escape re- tor or non-predator cues presented either visually or chemical- sponses to the perceived predation risk. The information ani- ly. We predicted that flight responses towards a threat stimulus mals obtain about potential predation risk may differ qualita- are more pronounced if cues of dangerous rather than harm- tively depending on the sensory modality by which a cue is less heterospecifics are presented and that N. pulcher,beingan perceived. For instance, olfactory cues may reveal better in- aquatic species, relies more on olfaction when discriminating formation about the presence or absence of threats, whereas between dangerous and harmless heterospecifics. N. pulcher visual information can reliably transmit the position and po- responded faster to the threat stimulus, reached a refuge faster tential attack distance of a predator. While this suggests a and entered a refuge more likely when predator cues were differential use of information perceived through the two sen- perceived. Unexpectedly, the sensory modality used to per- sory channels, the relative importance of visual vs. olfactory ceive the cues did not affect the escape response or the dura- cues when distinguishing between different predation threats tion of the recovery phase.
    [Show full text]
  • Do Verde Ao Roxo, As Abelhas Que Quase Ninguém Conhece
    AMBIENTE, SOCIEDADE E DESENVOLVIMENTOCONTENTS 33 ABELHAS DAS ORQUÍDEAS: DO VERDE AO ROXO, AS ABELHAS QUE QUASE NINGUÉM CONHECE Artigo de divulgação: As abelhas são insetos fascinantes! Venha ler uma breve apresentação das abelhas Euglossini! POR PAULA GÓRIA Se nos pedirem a descrição de uma abelha e seus hábitos, é bem provável que forneçamos as seguintes informações: “são listradas de preto e amarelo, fer- roam, produzem mel em suas colmeias volumosas e voam em direção ao nosso Macho de Euglossa sp com um polinário suco na primeira oportunidade que tiverem.” Uma minoria talvez se lembre de orquídea aderido ao tórax das abelhas nativas, as praticamente inofensivas sem-ferrão que fazem seus FOTO DE ALINE C.R. ANDRADE ninhos em vãos aproveitados das nossas paredes, troncos de árvores, buracos no chão e até cupinzeiros¹... Abelhas corbiculadas: A novidade, para muitos, é que existem cerca de 20 mil espécies de abelhas Na Família Apidae, é como catalogadas², compondo uma variedade incrível de formas e comportamentos³. são chamadas as fêmeas Por exemplo, aquelas verdadeiramente sociais como as citadas acima, constru- das tribos Apini, Bombini, toras de ninhos com milhares de indivíduos (nos quais ocorrem a sobreposição Euglossini e Meliponini. de gerações e a hierarquia de funções), aparecem apenas em algumas tribos A corbícula é uma estru- de abelhas corbiculadas4. tura côncava no último par de pernas, semelhante a uma colher, utilizada para transporte de pólen e outros materiais para o ninho (ausente nas fêmeas cleptoparasitas)16. 1 Abelhas sem ferrão do Brasil; Cortopassi-Lau- rino e Nogueiro-Neto (2016). LIVRO 2 Segundo levantamento de 2007 – The bees of the World; Charles Duncan Michener.
    [Show full text]
  • Testing the Potential of Environmental DNA Methods for Surveying Lake Tanganyika's Highly Diverse Fish Communities Christopher J
    Testing the potential of environmental DNA methods for surveying Lake Tanganyika's highly diverse fish communities Christopher James Doble A thesis submitted for the degree of Doctor of Philosophy Department of Genetics, Evolution and Environment University College London April 2020 1 Declaration I, Christopher James Doble, confirm the work presented in this thesis is my own. Where information has been derived from other sources, I confirm this has been indicated in the thesis. Christopher James Doble Date: 27/04/2020 2 Statement of authorship I planned and undertook fieldwork to the Kigoma region of Lake Tanganyika, Tanzania in 2016 and 2017. This included obtaining research permits, collecting environmental DNA samples and undertaking fish community visual survey data used in Chapters three and four. For Chapter two, cichlid reference database sequences were sequenced by Walter Salzburger’s research group at the University of Basel. I extracted required regions from mitochondrial genome alignments during a visit to Walter’s research group. Other reference sequences were obtained by Sanger sequencing. I undertook the DNA extractions and PCR amplifications for all samples, with the clean-up and sequencing undertaken by the UCL Sequencing facility. I undertook the method development, DNA extractions, PCR amplifications and library preparations for each of the next generation sequencing runs in Chapters three and four at the NERC Biomolecular Analysis Facility Sheffield. Following training by Helen Hipperson at the NERC Biomolecular Analysis Facility in Sheffield, I undertook the bioinformatic analysis of sequence data in Chapters three and four. I also carried out all the data analysis within each chapter. Chapters two, three and parts of four have formed a manuscript recently published in Environmental DNA (Doble et al.
    [Show full text]
  • Increased Longevity Due to Sexual Activity in Mole-Rats Is Associated
    RESEARCH ARTICLE Increased longevity due to sexual activity in mole-rats is associated with transcriptional changes in the HPA stress axis Arne Sahm1*, Matthias Platzer1, Philipp Koch2, Yoshiyuki Henning3, Martin Bens4, Marco Groth4, Hynek Burda5,6, Sabine Begall5, Saskia Ting7, Moritz Goetz7, Paul Van Daele8, Magdalena Staniszewska9, Jasmin Mona Klose9, Pedro Fragoso Costa9, Steve Hoffmann1†, Karol Szafranski2†, Philip Dammann5,10† 1Computational Biology Group, Leibniz Institute on Aging – Fritz Lipmann Institute, Jena, Germany; 2Core Facility Life Science Computing, Leibniz Institute on Aging – Fritz Lipmann Institute, Jena, Germany; 3Institute of Physiology, University Hospital, University of Duisburg-Essen, Essen, Germany; 4Core Facility Sequencing, Leibniz Institute on Aging – Fritz Lipmann Institute, Jena, Germany; 5Department of General Zoology, Faculty of Biology, University of Duisburg-Essen, Essen, Germany; 6Department of Game Management and Wildlife Biology, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences, Prague, Czech Republic; 7Institute of Pathology and Neuropathology, University Hospital, University of Duisburg-Essen, Essen, Germany; 8Department of Zoology, University of South Bohemia, Cˇ eske´ Budeˇjovice, Czech Republic; 9Department of Nuclear Medicine, University Hospital, University of Duisburg-Essen, Essen, Germany; 10Central Animal Laboratory, University Hospital, University of Duisburg-Essen, Essen, Germany *For correspondence: [email protected] † Sexual activity and/or reproduction are associated with a doubling of life expectancy in These authors contributed Abstract equally to this work the long-lived rodent genus Fukomys. To investigate the molecular mechanisms underlying this phenomenon, we analyzed 636 RNA-seq samples across 15 tissues. This analysis suggests that Competing interests: The changes in the regulation of the hypothalamic–pituitary–adrenal stress axis play a key role authors declare that no regarding the extended life expectancy of reproductive vs.
    [Show full text]
  • Lunar and Diurnal Cycles in Reproductive Physiology and Behavior in a Natural Population of Cooperatively Breeding Fish J
    Journal of Zoology Journal of Zoology. Print ISSN 0952-8369 Lunar and diurnal cycles in reproductive physiology and behavior in a natural population of cooperatively breeding fish J. K. Desjardins1,2, J. L. Fitzpatrick3,4, K. A. Stiver5,2, G. J. Van Der Kraak6 & S. Balshine2 1 Department of Biology, Stanford University, Stanford, CA, USA 2 Animal Behaviour Group, Department of Psychology, Neuroscience & Behaviour, McMaster University, Hamilton, ON, Canada 3 Centre for Evolutionary Biology, University of Western Australia, Crawley, Australia 4 Department of Biology, McMaster University, Hamilton, ON, Canada 5 Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA 6 College of Biological Sciences, University of Guelph, Guelph, ON, Canada Keywords Abstract Lake Tanganyika; lunar phase; Neolamprologus pulcher; sperm swimming Natural environmental periodicity that occurs on both the small scale like day speed; cichlidae; testosterone; length, or larger scale like lunar light can provide animals with valuable informa- 11-ketotestosterone. tion about resource availability and predation risk. Such environmental cycles are often linked to the timing of reproduction. Here, using the circulating androgen Correspondence concentrations, gonadal investment patterns and detailed behavioral observations Julie K. Desjardins, Department of Biology, we show that wild populations of the group-living cichlid, Neolamprologus pulcher 371 Serra Mall, Stanford University, from Lake Tanganyika, have marked diurnal differences in behavior
    [Show full text]