San Francisco Declaration on Research Assessment Putting Science Into the Assessment of Research
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New Editor on Journal of Cell Science Michael Way (Editor-In-Chief)
© 2019. Published by The Company of Biologists Ltd | Journal of Cell Science (2019) 132, jcs229740. doi:10.1242/jcs.229740 EDITORIAL New Editor on Journal of Cell Science Michael Way (Editor-in-Chief) As someone who has worked on things related to the actin cytoskeleton my whole research career, the nucleus was not something I paid much attention to. Yes, there were scattered historical reports of actin in the nucleus long before I started my PhD, but no one believed actin was really there of course – it was all an artefact of fixation, you know. Nuclear actin was taboo and no one talked about it at the meetings I went to as a student and postdoc. How wrong we were – today nuclear actin is alive and kicking, although there are definitely more questions than answers concerning what it is actually doing there. We now appreciate that the nucleus contains a wide assortment of proteins associated with the cytoplasmic actin cytoskeleton including myosin motors and actin nucleators such as the Arp2/3 complex. In addition, it should not be forgotten that many chromatin-associated complexes including SWI/SNF and INO80/ SWR also contain multiple actin-related proteins, as well as actin itself. It strikes me that maybe we should all be paying more attention to the nucleus and not just because it contains my favourite proteins! Maybe that’s why, in recent years, we’ve been seeing more submissions to JCS that are focused on different aspects of the nucleus and that traditionally appeared in journals with ‘molecular’ in their titles. -
Theory of Cytoskeletal Reorganization During Crosslinker-Mediated Mitotic Spindle Assembly
bioRxiv preprint doi: https://doi.org/10.1101/419135; this version posted March 1, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Theory of cytoskeletal reorganization during crosslinker-mediated mitotic spindle assembly A. R. Lamson, C. J. Edelmaier, M. A. Glaser, and M. D. Betterton Abstract Cells grow, move, and respond to outside stimuli by large-scale cytoskeletal reorganization. A prototypical example of cytoskeletal remodeling is mitotic spindle assembly, during which micro- tubules nucleate, undergo dynamic instability, bundle, and organize into a bipolar spindle. Key mech- anisms of this process include regulated filament polymerization, crosslinking, and motor-protein activity. Remarkably, using passive crosslinkers, fission yeast can assemble a bipolar spindle in the absence of motor proteins. We develop a torque-balance model that describes this reorganization due to dynamic microtubule bundles, spindle-pole bodies, the nuclear envelope, and passive crosslink- ers to predict spindle-assembly dynamics. We compare these results to those obtained with kinetic Monte Carlo-Brownian dynamics simulations, which include crosslinker-binding kinetics and other stochastic effects. Our results show that rapid crosslinker reorganization to microtubule overlaps facilitates crosslinker-driven spindle assembly, a testable prediction for future experiments. Combin- ing these two modeling techniques, we illustrate a general method for studying cytoskeletal network reorganization. 1 bioRxiv preprint doi: https://doi.org/10.1101/419135; this version posted March 1, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. -
The Serials Crisis and Open Access: a White Paper for the Virginia Tech Commission on Research
The Serials Crisis and Open Access A White Paper for the Virginia Tech Commission on Research Philip Young University Libraries Virginia Tech December 2, 2009 This work is licensed under a Creative Commons Attribution-Noncommercial-Share Alike 3.0 United States License. 1 Introduction This white paper offers an introduction to open access as well as a look at its current development. The open access movement is an attempt to free scholarly communication from restrictions on access, control, and cost, and to enable benefits such as data mining and increased citations. Open access has gained significant momentum through mandates from research funders and universities. While open access can be provided in parallel with traditional publishing, it is increasingly available as a publishing option. While open access is approached here from the problem of subscription inflation, it is important to recognize that open access is not merely a library issue, but affects the availability of research to current and future students and scholars. The Serials Crisis The phrase “serials crisis” has been in use for more than a decade as shorthand for the rise in costs for academic journals and the inability of libraries to bring these costs under control. Price inflation for academic journals significantly exceeds the consumer price index (see graph, next page). The most recent data show that journal prices increased at an average rate of 8% in 2007.1 Because journal subscriptions are a large part of the collections budget at academic libraries, any reduction in funding usually results in a loss of some journals. And the high rate of annual inflation means that academic library budgets must increase every year simply to keep the same resources that students and faculty need. -
ANNUAL REPORT 2010 Contents
ANNUAL REPORT 2010 Contents I. Overviews ...............................................................................................................3 Year 2010 in review, Director of FIMM ............................................................................. 3 Views from the former and current Chair of the Board ...................................................5 II. FIMM Launch Event ................................................................................................ 6 III. How is the Nordic EMBL Partnership build-up progressing in Oslo and Umeå? ..........7 IV. Academician of Science, Professor Leena Peltonen-Palotie in memoriam .............. 8 V. Research ................................................................................................................ 10 Human Genomics ..........................................................................................................10 Medical Systems Biology and Translational Research ..................................................... 14 Research collaborations and highlights ..........................................................................21 Personalized medicine of cancer becoming a reality.......................................................25 Doctoral Training ...........................................................................................................26 VI. Technology Centre .................................................................................................28 Genomics Unit ..............................................................................................................28 -
Journal of Cell Science & Therapy
Journal of Cell Science & Therapy 2021 Conference Announcement Mark on Your Calendar, Stem Cell 2021 is coming soon!! Ahmed Hegazi Pursued by the Successful Completion of the Stem Cell discuss the latest developments in the field of Stem Cell and Conference, we are facilitating its next version “International Regenerative Medicine as well. Current studies of Stem cell Conference on Stem Cell” in Osaka, Japan on March 16-17, are examining how undifferentiated organisms might be 2021. utilized to anticipate or fix sicknesses and wounds, for The theme attracts for the Stem Cell 2021 is “Frontiers in example, Parkinson's illness, type 1 diabetes, coronary illness, Stem Cells & Turning Ideas into Reality”. spinal string damage, strong dystrophy, Alzheimer's malady, Welcoming all of you for our Stem Cell 2021 involves strokes, osteoarthritis, vision and hearing misfortune. extraordinary delight, warmth and passion. We anticipate all Immature microorganisms could likewise be utilized to of you sharing your knowledge and information, look into supplant or repair tissue harmed by ailment or damage. thoughts and to make a sprinkle with new upgrades at this 2- days occasion. This time we have introduced some contemporary and recently updated and advanced highlights of Life sciences in Stem Cell 2021. Stem Cell 2021 wish to bring all the medicinal science, chemical engineering & tissue regeneration professionals and scientists under material science fields for our Smart Materials Meeting to collaborate and share their insight and their most Cancer Stem Cells, Bio-Makers Of Cancer Stem Cells, Stem current research to the whole Material Science Community. Cell Biology & Advances, Advanced In Tissue Regeneration, Also this time, Our International Conference on Stem Cell Embryonic Stem Cell, Reprogramming In Stem Cell & will be aims to haven for Multinational organizations, Transplantation, Treatment Of Diseases By Stem Cell entrepreneurs across the globe, the researchers and Therapeutics, Stem Cell Banking, Novel Stem Cell Therapy, academicians. -
Ultrastructure in Ochromonas Danica
EFFECTS OF CHLORAMPHENICOL ON CHLOROPLAST AND MITOCHONDRIAL ULTRASTRUCTURE IN OCHROMONAS DANICA HEIDI SMITH-JOHANNSEN and SARAH P . GIBBS From the Department of Biology, McGill University, Montreal 110, P. Q., Canada ABSTRACT The effect of chloramphenicol (CAP) on cell division and organelle ultrastructure was studied during light-induced chloroplast development in the Chrysophyte alga, Ochromonas danica . Since the growth rate of the CAP-treated cells is the same as that of the control cells for the first 12 hr in the light, CAP is presumed to be acting during that interval solely by inhibiting protein synthesis on chloroplast and mitochondrial ribosomes. CAP markedly inhibits chloroplast growth and differentiation . During the first 12 hr in the light, chloro- phyll synthesis is inhibited by 9317/c , the formation of new thylakoid membranes is reduced by 91 70, and the synthesis of chloroplast ribosomes is inhibited by 81 %. Other chloroplast- associated abnormalities which occur during the first 12 hr and become more pronounced with extended CAP treatment are the presence of prolamellar bodies and of abnormal stacks of thylakoids, the proliferation of the perinuclear reticulum, and the accumulation of dense granular material between the chloroplast envelope and the chloroplast endo- plasmic reticulum . CAP also causes a progressive loss of the mitochondrial cristae, which is paralleled by a decline in the growth rate of the cells, but it has no effect on the synthesis of mitochondrial ribosomes. We postulate that one or more chloroplast ribosomal proteins are synthesized on chloroplast ribosomes, whereas mitochondrial ribosomal pro- teins are synthesized on cytoplasmic ribosomes. INTRODUCTION Both chloroplasts and mitochondria are known insoluble inner membrane proteins, are believed to contain DNA and RNA and to have all the to be synthesized on mitochondrial ribosomes (3) . -
IST Annual Report 2019
Annual Report 2019 IST Austria administrative and The people of IST Austria technical support staff by nationality Austria 59.4% Nationalities on campus Germany 5.6% Hungary 3.1% Poland 2.5% Romania 2.5% Scientists as well as administrative and technical support staff come Italy 2.1% Russia 1.7% from all over the world to conduct and back research at IST Austria. Czech Republic 1.4% As of December 31, 2019, a total of 72 nationalities were represented India 1.4% Slovakia 1.4% on campus. Spain 1.4% UK 1.4% Other 16.1% North America Europe Asia Canada Albania Italy Afghanistan Cuba Andorra Latvia Bangladesh El Salvador Armenia Lithuania China Mexico Austria Luxembourg South Korea USA Belarus Macedonia India Belgium Malta Iran Bosnia and Netherlands Israel Herzegovina Norway Japan Bulgaria Poland Jordan Croatia Portugal Kazakhstan Cyprus Romania Lebanon Czech Republic Serbia Mongolia Denmark Slovakia Philippines Finland Slovenia Russia France Spain Singapore Georgia Sweden Syria Germany Switzerland Vietnam Greece Turkey Hungary UK Ireland Ukraine Africa Egypt Kenya IST Austria scientists by nationality Libya Austria 14.7% Nigeria Germany 10.9% South America Italy 7.4% Argentina India 5.9% Russia 4.7% Brazil Slovakia 4.1% Chile China 4.1% Colombia Hungary 3.7% Peru Spain 3.3% Uruguay USA 3.1% Czech Republic 2.9% UK 2.4% Oceania Other 32.8% Australia Content 2 HAPPY BIRTHDAY! 40 RESEARCH 4 Foreword by the president 42 Biology 5 Board member voices 44 Computer science 6 “An Austrian miracle” 46 Mathematics A year of celebration 48 Neuroscience -
The European Molecular Biology Organization (EMBO) and Nature
The European Molecular Biology Organization (EMBO) and Nature Publishing Group (NPG) are pleased to announce that The EMBO Journal and EMBO reports will accept open-access articles as of January 2007, subject to payment of a publication fee. The journals are moving to a mixed-revenue model of subscription charges and publication fees. The open-access option will be available to all authors submitting original research on or after 1 January 2007. The publication fee will be €2,000 plus VAT (where applicable). Articles published with a publication fee will be clearly identified in the online and print editions of the journal with an open-access icon. Print subscription prices will not be affected and site license prices will be adjusted in line with the amount of subscription content published annually. The journal editors will be blind to the author's choice, avoiding any possibility of a conflict of interest during peer review and acceptance. Authors paying the publication fee will be entitled to self-archive the published version immediately on publication in a repository of their choice, and in any format. Content that an author has decided to make freely available online will be licensed under the Creative Commons Deed 2.5 (http://creativecommons.org/licenses/by-nc-nd/2.5/). The author thereby permits dissemination and re-use of the article, enabling the sharing and re-use of scientific material. This does not however permit commercial exploitation or the creation of derivative works without specific permission. Other articles will continue to be published under NPG’s exclusive License-to-Publish, where its usual self-archiving policy will apply. -
New Doors to Open…And So Many! | Journal of Cell Science
New doors to open…and so many! | Journal of Cell Science Advertisement California Institute of Technology Log in Advanced search Home Articles About us For authors Journal info Contacts EDITORIAL New doors to open…and so many! Previous Article Next Article D.M. Glover Journal of Cell Science 2000 113: 359-360; This Issue Article Info & metrics Email Summary Share The pursuit of science is a wonderful journey of Citation Tools discovery along which there are a myriad of avenues to Alerts be explored. There have always been so many objects of fascination, so many questions to ask along the way, © Request Permissions We use cookies to help us improve this website. Learn more so many possibilities to understand new principles, that making the decision about which problem to address Article navigation and then having the self-discipline to explore it in depth Top challenge all who practice the art. How then are we, as Article cell biologists, to cope with the mountain of information Info & metrics that is accumulating as we enter the twenty-first https://jcs.biologists.org/content/113/3/359.long[8/10/2020 3:19:01 PM] New doors to open…and so many! | Journal of Cell Science century? We now have the potential to decipher the primary sequences of every single cellular protein for Related articles several model organisms. Just how are we to put this Web of Science PubMed information into an intelligible framework for Google Scholar understanding cell physiology? The turn of a century is a time at which we can permit ourselves the luxury of Cited by.. -
Reporterseq Reveals Genome-Wide Dynamic Modulators of the Heat
RESEARCH ARTICLE ReporterSeq reveals genome-wide dynamic modulators of the heat shock response across diverse stressors Brian D Alford1†, Eduardo Tassoni-Tsuchida1,2†, Danish Khan1, Jeremy J Work1, Gregory Valiant3, Onn Brandman1* 1Department of Biochemistry, Stanford University, Stanford, United States; 2Department of Biology, Stanford University, Stanford, United States; 3Department of Computer Science, Stanford University, Stanford, United States Abstract Understanding cellular stress response pathways is challenging because of the complexity of regulatory mechanisms and response dynamics, which can vary with both time and the type of stress. We developed a reverse genetic method called ReporterSeq to comprehensively identify genes regulating a stress-induced transcription factor under multiple conditions in a time- resolved manner. ReporterSeq links RNA-encoded barcode levels to pathway-specific output under genetic perturbations, allowing pooled pathway activity measurements via DNA sequencing alone and without cell enrichment or single-cell isolation. We used ReporterSeq to identify regulators of the heat shock response (HSR), a conserved, poorly understood transcriptional program that protects cells from proteotoxicity and is misregulated in disease. Genome-wide HSR regulation in budding yeast was assessed across 15 stress conditions, uncovering novel stress-specific, time- specific, and constitutive regulators. ReporterSeq can assess the genetic regulators of any transcriptional pathway with the scale of pooled genetic screens and the precision of pathway- specific readouts. *For correspondence: [email protected] †These authors contributed equally to this work Introduction Competing interests: The The heat shock response (HSR) is a conserved stress response that shields cells from cytoplasmic authors declare that no proteotoxicity by increasing the expression of protective proteins (Lindquist, 1986; Mori- competing interests exist. -
Live Cell Imaging of Meiosis in Arabidopsis Thaliana
TOOLS AND RESOURCES Live cell imaging of meiosis in Arabidopsis thaliana Maria A Prusicki1, Emma M Keizer2†, Rik P van Rosmalen2†, Shinichiro Komaki1‡, Felix Seifert1§, Katja Mu¨ ller1, Erik Wijnker3, Christian Fleck2#*, Arp Schnittger1* 1Department of Developmental Biology, University of Hamburg, Hamburg, Germany; 2Department of Agrotechnology and Food Sciences, Wageningen University, Wageningen, The Netherlands; 3Department of Plant Science, Laboratory of Genetics, Wageningen University and Research, Wageningen, The Netherlands Abstract To follow the dynamics of meiosis in the model plant Arabidopsis, we have established a live cell imaging setup to observe male meiocytes. Our method is based on the concomitant visualization of microtubules (MTs) and a meiotic cohesin subunit that allows following five cellular *For correspondence: parameters: cell shape, MT array, nucleus position, nucleolus position, and chromatin condensation. [email protected] (CF); [email protected] We find that the states of these parameters are not randomly associated and identify 11 cellular (AS) states, referred to as landmarks, which occur much more frequently than closely related ones, indicating that they are convergence points during meiotic progression. As a first application of our †These authors contributed system, we revisited a previously identified mutant in the meiotic A-type cyclin TARDY equally to this work ASYNCHRONOUS MEIOSIS (TAM). Our imaging system enabled us to reveal both qualitatively and Present address: ‡Plant Cell -
Chromatin and Epigenetics Cross-Journal Focus Chromatin and Epigenetics
EMBO Molecular Medicine cross-journal focus Chromatin and epigenetics cross-journal focus Chromatin and epigenetics EDITORS Esther Schnapp Senior Editor [email protected] | T +49 6221 8891 502 Esther joined EMBO reports in October 2008. She was awarded her PhD in 2005 at the Max Planck Institute for Molecular Cell Biology and Genetics in Dresden, Germany, where she studied tail regeneration in the axolotl. As a post-doc she worked on muscle development in zebrafish and on the characterisation of mesoangioblasts at the Stem Cell Research Institute of the San Raffaele Hospital in Milan, Italy. Anne Nielsen Editor [email protected] | T +49 6221 8891 408 Anne received her PhD from Aarhus University in 2008 for work on miRNA processing in Joergen Kjems’ lab. As a postdoc she then went on to join Javier Martinez’ lab at IMBA in Vienna and focused on siRNA-binding proteins and non-conventional splicing in the unfolded protein response. Anne joined The EMBO Journal in 2012. Maria Polychronidou Editor [email protected] | T +49 6221 8891 410 Maria received her PhD from the University of Heidelberg, where she studied the role of nuclear membrane proteins in development and aging. During her post-doctoral work, she focused on the analysis of tissue-specific regulatory functions of Hox transcription factors using a combination of computational and genome-wide methods. Céline Carret Editor [email protected] | T +49 6221 8891 310 Céline Carret completed her PhD at the University of Montpellier, France, characterising host immunodominant antigens to fight babesiosis, a parasitic disease caused by a unicellular EMBO Apicomplexan parasite closely related to the malaria agent Plasmodium.