Mol2net Computational Models of the Brain
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Reverse-Engineering the Brain [email protected]
Prof. Henry Markram Dr. Felix Schürmann Reverse-Engineering the Brain [email protected] http://bluebrainproject.epfl.ch Brain Mind Institute © Blue Brain Project The Electrophysiologist’s View BBP BBP BBP © Blue Brain Project Accurate Models that Relate to Experiment LBCÆPC SBCÆPC NBCÆPC BTCÆPC MCÆPC © Blue Brain Project BBP Phase I: Neocortical Column Create a faithful “in silico” replica at cellular level of a neocortical column of a young rat by the means of: • reverse engineering the biology components • forward constructing functional mathematical models • Building 10,000 morphologically complex neurons • Constructing a circuit with 30,000,000 dynamic synapses • Simulating the column close to real-time © Blue Brain Project Building and Simulating the NCC BBP © Blue Brain Project The Electrocphysiologist’s View - Revisited BBP BBP BBP © Blue Brain Project BBP Phase I: « in vitro » vs. « in silico » BBP BBP BBP BBP in silico in silico in vitro in vitro © Blue Brain Project Level of Detail 0x Channels ,00 Compartment 10 ~20HH style channels/compartment Neuron ~350compartments/neuron Synapses A Rat’s Neocortical Column: IT Challenge: • ~1mm^3 • 3,500,000 compartments • 6 layers • passive (cable, Gauss • > 50 morphological classes Elimination) • ~340 morpho-electrical types • active HH style channels • ~200 types of ion channels • 30,000,000 synapses ~3,000/neuron • 10,000 neurons • dynamic • 18 types of synapses • 30,000,000 synapses • Æ reporting 1 value/compartment Æ 140GB/biol sec © Blue Brain Project Usage of BG/L in the BBP Dedicated 4 rack BG/L @ EPFL with 8192 processors, 2TB of distributed memory, 22.4 TFlop (peak) ÆUsed throughout all parts of the project ÆAllows iteration of complete process within a week • Building: Run evolutionary algorithms for fitting of thousands of single cell models to data typical job size: 2048 procs S. -
A Case Study of a Blue Brain Working on the Neural Network Concept
International Journal of Multidisciplinary Research and Growth Evaluation www.allmultidisciplinaryjournal.com International Journal of Multidisciplinary Research and Growth Evaluation ISSN: 2582-7138 Received: 03-06-2021; Accepted: 19-06-2021 www.allmultidisciplinaryjournal.com Volume 2; Issue 4; July-August 2021; Page No. 201-206 A case study of a blue brain working on the neural network concept Neha Verma Student, Department of Computer Applications, RIMT University, Mandi Gobindgarh, Punjab, India Corresponding Author: Neha Verma Abstract Blue brain is the name of the world's first virtual brain So IBM is trying to create an artificial brain that can think, initiated and founded by the scientist Henry Markram at response and take decisions like human brain. It is called EPFL in Lausanne Switzerland. The main aim behind this "Blue Brain". Hence this paper consists of the concepts of project is to save knowledge of the human brain for decades. Blue Brain, the requirements of the Blue Brain project, It is a well known fact that human doesn't live for thousands various strategies undertaken to build the Blue Brain, of years and the intelligence is also lost after a person's death. advantages and disadvantages and many more. Keywords: Neurons, Nanobots, Blue Gene, Virtual mind, Neuroscience 1. Introduction As we know the human brain is most powerful creation of God and it is very complex to understand the circuit of human brain. However with the advancement in technology, now it is possible to create a virtual brain so in future, the human brains are going to be attacked by the blue brain and it is going to be very useful for all of us. -
Behavioral Plasticity Through the Modulation of Switch Neurons
Behavioral Plasticity Through the Modulation of Switch Neurons Vassilis Vassiliades, Chris Christodoulou Department of Computer Science, University of Cyprus, 1678 Nicosia, Cyprus Abstract A central question in artificial intelligence is how to design agents ca- pable of switching between different behaviors in response to environmental changes. Taking inspiration from neuroscience, we address this problem by utilizing artificial neural networks (NNs) as agent controllers, and mecha- nisms such as neuromodulation and synaptic gating. The novel aspect of this work is the introduction of a type of artificial neuron we call \switch neuron". A switch neuron regulates the flow of information in NNs by se- lectively gating all but one of its incoming synaptic connections, effectively allowing only one signal to propagate forward. The allowed connection is determined by the switch neuron's level of modulatory activation which is affected by modulatory signals, such as signals that encode some informa- tion about the reward received by the agent. An important aspect of the switch neuron is that it can be used in appropriate \switch modules" in or- der to modulate other switch neurons. As we show, the introduction of the switch modules enables the creation of sequences of gating events. This is achieved through the design of a modulatory pathway capable of exploring in a principled manner all permutations of the connections arriving on the switch neurons. We test the model by presenting appropriate architectures in nonstationary binary association problems and T-maze tasks. The results show that for all tasks, the switch neuron architectures generate optimal adaptive behaviors, providing evidence that the switch neuron model could be a valuable tool in simulations where behavioral plasticity is required. -
Blue Brain Project
Blue Brain Project The Blue Brain Project is an attempt to create a with 100 mesocircuits totalling a hundred million cells. synthetic brain by reverse-engineering mammalian brain Finally a cellular human brain is predicted possible by circuitry. The aim of the project, founded in May 2005 by 2023 equivalent to 1000 rat brains with a total of a hun- the Brain and Mind Institute of the École Polytechnique dred billion cells.[8][9] Fédérale de Lausanne (EPFL) in Switzerland, is to study Now that the column is finished, the project is currently the brain’s architectural and functional principles. busying itself with the publishing of initial results in sci- The project is headed by the founding director Henry entific literature, and pursuing two separate goals: Markram and co-directed by Felix Schürmann and Sean Hill. Using a Blue Gene supercomputer running Michael 1. construction of a simulation on the molecular Hines’s NEURON software, the simulation does not con- level,[1] which is desirable since it allows studying sist simply of an artificial neural network, but involves the effects of gene expression; a biologically realistic model of neurons.[1][2][3] It is hoped that it will eventually shed light on the nature of 2. simplification of the column simulation to allow for consciousness.[3] parallel simulation of large numbers of connected There are a number of sub-projects, including the Cajal columns, with the ultimate goal of simulating a Blue Brain, coordinated by the Supercomputing and Vi- whole neocortex (which in humans consists of about sualization Center of Madrid (CeSViMa), and others run 1 million cortical columns). -
Blue Brain-A Massive Storage Space
Advances in Computational Sciences and Technology ISSN 0973-6107 Volume 10, Number 7 (2017) pp. 2125-2136 © Research India Publications http://www.ripublication.com Blue Brain-A Massive Storage Space Y.Vijayalakshmi Dept. of CSE, Karpagam University, Coimbatore, Tamilnadu, India Teena Jose Research Scholar, CS, Bharathiar University Coimbatore, Tamilnadu, India Dr. S. Sasidhar Babu Professor, Dept. of CSE, Sree Narayana Gurukulam College of Engineering, Ernakulam Dt. Kerala, India Sruthi R. Glorya Jose Dept. of CS, St.Thomas College, Thrisur, Kerala, India Dr. P. Manimegalai Prof.,Dept. of ECE, Karpagam University, Coimbatore, Tamilnadu, India. Abstract Human brain, the greatest creation of god which is package of unimaginative functions. A man is intelligent because of the brain. ”Blue Brain” is world’s first virtual brain. Pink brain is special because of that it can think, respond, take decision without any effort and keep anything in memory. Aim of the project is to archive features of Pink brain to a Digital system. In short, ”Brain to a Digital System”. After death of a human, data including intelligence, knowledge, personality, memory and feelings can be used for further development of society. BB Storage space is an extracted concept from Blue brain project. Storing numerous and variety of data on memory is an advantage provided. By this concept, registers act as neurons and Electric signals as simulation impulses. Variation of data are identified based on signal variation that reach the registers. Registers mentioned here is same that a normal system maintains. Benefit 2126 Y.Vijayalakshmi et al focused by this concept of storage is storing data without deletion on real time as normal brain does. -
The Question of Algorithmic Personhood and Being
Article The Question of Algorithmic Personhood and Being (Or: On the Tenuous Nature of Human Status and Humanity Tests in Virtual Spaces—Why All Souls Are ‘Necessarily’ Equal When Considered as Energy) Tyler Lance Jaynes Alden March Bioethics Institute, Albany Medical College, Albany, NY 12208, USA; [email protected] Abstract: What separates the unique nature of human consciousness and that of an entity that can only perceive the world via strict logic-based structures? Rather than assume that there is some potential way in which logic-only existence is non-feasible, our species would be better served by assuming that such sentient existence is feasible. Under this assumption, artificial intelligence systems (AIS), which are creations that run solely upon logic to process data, even with self-learning architectures, should therefore not face the opposition they have to gaining some legal duties and protections insofar as they are sophisticated enough to display consciousness akin to humans. Should our species enable AIS to gain a digital body to inhabit (if we have not already done so), it is more pressing than ever that solid arguments be made as to how humanity can accept AIS as being cognizant of the same degree as we ourselves claim to be. By accepting the notion that AIS can and will be able to fool our senses into believing in their claim to possessing a will or ego, we may yet Citation: Jaynes, T.L. The Question have a chance to address them as equals before some unforgivable travesty occurs betwixt ourselves of Algorithmic Personhood and Being and these super-computing beings. -
A General Principle of Dendritic Constancy – a Neuron's Size And
bioRxiv preprint doi: https://doi.org/10.1101/787911; this version posted October 1, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Dendritic constancy Cuntz et al. A general principle of dendritic constancy – a neuron’s size and shape invariant excitability *Hermann Cuntza,b, Alexander D Birda,b, Marcel Beininga,b,c,d, Marius Schneidera,b, Laura Mediavillaa,b, Felix Z Hoffmanna,b, Thomas Dellerc,1, Peter Jedlickab,c,e,1 a Ernst Strungmann¨ Institute (ESI) for Neuroscience in cooperation with the Max Planck Society, 60528 Frankfurt am Main, Germany b Frankfurt Institute for Advanced Studies, 60438 Frankfurt am Main, Germany c Institute of Clinical Neuroanatomy, Neuroscience Center, Goethe University, 60590 Frankfurt am Main, Germany d Max Planck Insitute for Brain Research, 60438 Frankfurt am Main, Germany e ICAR3R – Interdisciplinary Centre for 3Rs in Animal Research, Justus Liebig University Giessen, 35390 Giessen, Germany 1 Joint senior authors *[email protected] Keywords Electrotonic analysis, Compartmental model, Morphological model, Excitability, Neuronal scaling, Passive normalisation, Cable theory 1/57 bioRxiv preprint doi: https://doi.org/10.1101/787911; this version posted October 1, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. -
Simulation and Analysis of Neuro-Memristive Hybrid Circuits
Simulation and analysis of neuro-memristive hybrid circuits João Alexandre da Silva Pereira Reis Mestrado em Física Departamento de Física e Astronomia 2016 Orientador Paulo de Castro Aguiar, Investigador Auxiliar do Instituto de Investigação e Inovação em Saúde da Universidade do Porto Coorientador João Oliveira Ventura, Investigador Auxiliar do Departamento de Física e Astronomia da Universidade do Porto Todas as correções determinadas pelo júri, e só essas, foram efetuadas. O Presidente do Júri, Porto, ______/______/_________ U P M’ P Simulation and analysis of neuro-memristive hybrid circuits Advisor: Author: Dr. Paulo A João Alexandre R Co-Advisor: Dr. João V A dissertation submitted in partial fulfilment of the requirements for the degree of Master of Science A at A Department of Physics and Astronomy Faculty of Science of University of Porto II FCUP II Simulation and analysis of neuro-memristive hybrid circuits FCUP III Simulation and analysis of neuro-memristive hybrid circuits III Acknowledgments First and foremost, I need to thank my dissertation advisors Dr. Paulo Aguiar and Dr. João Ven- tura for their constant counsel, however basic my doubts were or which wall I ran into. Regardless of my stubbornness to stick to my way to research and write, they were always there for me. Of great importance, because of our shared goals, Catarina Dias and Mónica Cerquido helped me have a fixed and practical outlook to my research. During the this dissertation, I attended MemoCIS, a training school of memristors, which helped me have a more concrete perspective on state of the art research on technical details, modeling considerations and concrete proposed and realized applications. -
5. Neuromorphic Chips
Neuromorphic chips for the Artificial Brain Jaeseung Jeong, Ph.D Program of Brain and Cognitive Engineering, KAIST Silicon-based artificial intelligence is not efficient Prediction, expectation, and error Artificial Information processor vs. Biological information processor Core 2 Duo Brain • 65 watts • 10 watts • 291 million transistors • 100 billion neurons • >200nW/transistor • ~100pW/neuron Comparison of scales Molecules Channels Synapses Neurons CNS 0.1nm 10nm 1mm 0.1mm 1cm 1m Silicon Transistors Logic Multipliers PIII Parallel Gates Processors Motivation and Objective of neuromorphic engineering Problem • As compared to biological systems, today’s intelligent machines are less efficient by a factor of a million to a billion in complex environments. • For intelligent machines to be useful, they must compete with biological systems. Human Cortex Computer Simulation for Cerebral Cortex 20 Watts 1010 Watts 10 Objective I.4 Liter 4x 10 Liters • Develop electronic, neuromorphic machine technology that scales to biological level for efficient artificial intelligence. 9 Why Neuromorphic Engineering? Interest in exploring Interest in building neuroscience neurally inspired systems Key Advantages • The system is dynamic: adaptation • What if our primitive gates were a neuron computation? a synapse computation? a piece of dendritic cable? • Efficient implementations compute in their memory elements – more efficient than directly reading all the coefficients. Biology and Silicon Devices Similar physics of biological channels and p-n junctions -
Physiological Role of AMPAR Nanoscale Organization at Basal State and During Synaptic Plasticities Benjamin Compans
Physiological role of AMPAR nanoscale organization at basal state and during synaptic plasticities Benjamin Compans To cite this version: Benjamin Compans. Physiological role of AMPAR nanoscale organization at basal state and during synaptic plasticities. Human health and pathology. Université de Bordeaux, 2017. English. NNT : 2017BORD0700. tel-01753429 HAL Id: tel-01753429 https://tel.archives-ouvertes.fr/tel-01753429 Submitted on 29 Mar 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE PRÉSENTÉE POUR OBTENIR LE GRADE DE DOCTEUR DE L’UNIVERSITÉ DE BORDEAUX ÉCOLE DOCTORALE DES SCIENCES DE LA VIE ET DE LA SANTE SPÉCIALITÉ NEUROSCIENCES Par Benjamin COMPANS Rôle physiologique de l’organisation des récepteurs AMPA à l’échelle nanométrique à l’état basal et lors des plasticités synaptiques Sous la direction de : Eric Hosy Soutenue le 19 Octobre 2017 Membres du jury Stéphane Oliet Directeur de Recherche CNRS Président Jean-Louis Bessereau PU/PH Université de Lyon Rapporteur Sabine Levi Directeur de Recherche CNRS Rapporteur Ryohei Yasuda Directeur de Recherche Max Planck Florida Institute Examinateur Yukiko Goda Directeur de Recherche Riken Brain Science Institute Examinateur Daniel Choquet Directeur de Recherche CNRS Invité 1 Interdisciplinary Institute for NeuroSciences (IINS) CNRS UMR 5297 Université de Bordeaux Centre Broca Nouvelle-Aquitaine 146 Rue Léo Saignat 33076 Bordeaux (France) 2 Résumé Le cerveau est formé d’un réseau complexe de neurones responsables de nos fonctions cognitives et de nos comportements. -
Large-Scale Simulation of Brain Tissue, Blue Brain Project, EPFL
ANL/ALCF/ESP-17/3 Large-Scale Simulation of Brain Tissue, Blue Brain Project, EPFL Technical Report for the ALCF Theta Early Science Program Argonne Leadership Computing Facility ALCF Early Science Program (ESP) Technical Report ESP Technical Reports describe the code development, porting, and optimization done in preparing an ESP project's application code(s) for the next generation ALCF computer system. This report is for a project in the Theta ESP, preparing for the ALCF Theta computer system. About Argonne National Laboratory Argonne is a U.S. Department of Energy laboratory managed by UChicago Argonne, LLC under contract DE-AC02-06CH11357. The Laboratoryfs main facility is outside Chicago, at 9700 South Cass Avenue, Argonne, Illinois 60439. For information about Argonne and its pioneering science and technology programs, see www.anl.gov. DOCUMENT AVAILABILITY Online Access: U.S. Department of Energy (DOE) reports produced after 1991 and a growing number of pre-1991 documents are available free at OSTI.GOV (http://www.osti.gov/), a service of the U.S. Dept. of Energy's Office of Scientific and Technical Information Reports not in digital format may be purchased by the public from the National Technical Information Service (NTIS): U.S. Department of Commerce National Technical Information Service 5301 Shawnee Rd Alexandria, VA 22312 www.ntis.gov Phone: (800) 553-NTIS (6847) or (703) 605-6000 Fax: (703) 605-6900 Email: [email protected] Reports not in digital format are available to DOE and DOE contractors from the Office of Scientific and Technical Information (OSTI): U.S. Department of Energy Office of Scientific and Technical Information P.O. -
Draft Nstac Report to the President On
THE PRESIDENT’S NATIONAL SECURITY TELECOMMUNICATIONS ADVISORY COMMITTEE DRAFT NSTAC REPORT TO THE PRESIDENT DRAFTon Communications Resiliency TBD Table of Contents Executive Summary .......................................................................................................ES-1 Introduction ........................................................................................................................1 Scoping and Charge.............................................................................................................2 Subcommittee Process ........................................................................................................3 Summary of Report Structure ...............................................................................................3 The Future State of ICT .......................................................................................................4 ICT Vision ...........................................................................................................................4 Wireline Segment ............................................................................................................5 Satellite Segment............................................................................................................6 Wireless 5G/6G ..............................................................................................................7 Public Safety Communications ..........................................................................................8