TNP Herbaceous Plants and Fungi Enhanced Study Guide 1 2019
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Museum, University of Bergen, Norway for Accepting The
PERSOONIA Published by the Rijksherbarium, Leiden Volume Part 6, 4, pp. 439-443 (1972) The Suboperculate ascus—a review Finn-Egil Eckblad Botanical Museum, University of Bergen, Norway The suboperculate nature of the asci of the Sarcoscyphaceae is discussed, that it does in its and further and it is concluded not exist original sense, that the Sarcoscyphaceae is not closely related to the Sclerotiniaceae. The question of the precise nature ofthe ascus in the Sarcoscyphaceae is important in connection with the of the the The treatment taxonomy of Discomycetes. family has been established the Sarcoscyphaceae as a highranking taxon, Suboperculati, by Le Gal (1946b, 1999), on the basis of its asci being suboperculate. Furthermore, the Suboperculati has beenregarded as intermediatebetween the rest of the Operculati, The Pezizales, and the Inoperculati, especially the order Helotiales, and its family Sclerotiniaceae (Le Gal, 1993). Recent views on the taxonomie position of the Sarcoscyphaceae are given by Rifai ( 1968 ), Eckblad ( ig68 ), Arpin (ig68 ), Kim- brough (1970) and Korf (igyi). The Suboperculati were regarded by Le Gal (1946a, b) as intermediates because had both the beneath they operculum of the Operculati, and in addition, it, some- ofthe of the In the the thing pore structure Inoperculati. Suboperculati pore struc- to ture is said take the form of an apical chamberwith an internal, often incomplete within Note this ring-like structure it. that in case the spores on discharge have to travers a double hindrance, the internal ring and the circular opening, and that the diameters of these obstacles are both smaller than the smallest diameterof the spores. -
Leaf-Associated Shifts in Bacterial and Fungal Communities in Response to Chicken Rearing Under Moso Bamboo Forests in Subtropical China
Article Leaf-Associated Shifts in Bacterial and Fungal Communities in Response to Chicken Rearing Under Moso Bamboo Forests in Subtropical China Xiaoping Zhang 1, Zheke Zhong 1,*, Xu Gai 1, Jiafu Ying 2, Weifen Li 2, Xuhua Du 1, Fangyuan Bian 1 and Chuanbao Yang 1 1 China National Bamboo Research Center, Key Laboratory of Resources and Utilization of Bamboo of State Forestry Administration, Hangzhou 310012, China; [email protected] (X.Z.); [email protected] (X.G.); [email protected] (X.D.); [email protected] (F.B.); [email protected] (C.Y.) 2 College of Animal Sciences, Zhejiang University, Hangzhou 310058, China; [email protected] (J.Y.); wfl[email protected] (W.L.) * Correspondence: [email protected]; Tel.: +86-0571-88860734 Received: 25 January 2019; Accepted: 25 February 2019; Published: 1 March 2019 Abstract: Integrated bamboo-chicken farming (BCF) systems are a traditional agroforestry pattern with large economic benefits in subtropical China. However, little is known regarding the effect of this integration on the bamboo leaf-associated microbiome, which can be very important for disease control and nutrient turnover. In the present study, we compared the leaf-associated bacterial and fungal communities of moso bamboo (Phyllostachys edulis) in a BCF system and an adjacent moso bamboo forest (MBF). The results showed that Cyanobacteria and Ascomycota were the predominant microbial phyla associated with bamboo leaves. Chicken farming under the bamboo forest significantly increased the bacterial and fungal alpha diversity (observed operational taxonomic units (OTUs) and Simpson’s index) associated with bamboo leaves. Principal components analysis (PCoA) further confirmed the shifts in the bacterial and fungal communities caused by chicken farming. -
RI Equisetopsida and Lycopodiopsida.Indd
IIntroductionntroduction byby FFrancisrancis UnderwoodUnderwood Rhode Island Equisetopsida, Lycopodiopsida and Isoetopsida Special Th anks to the following for giving permission for the use their images. Robbin Moran New York Botanical Garden George Yatskievych and Ann Larson Missouri Botanical Garden Jan De Laet, plantsystematics.org Th is pdf is a companion publication to Rhode Island Equisetopsida, Lycopodiopsida & Isoetopsida at among-ri-wildfl owers.org Th e Elfi n Press 2016 Introduction Formerly known as fern allies, Horsetails, Club-mosses, Fir-mosses, Spike-mosses and Quillworts are plants that have an alternate generation life-cycle similar to ferns, having both sporophyte and gametophyte stages. Equisetopsida Horsetails date from the Devonian period (416 to 359 million years ago) in earth’s history where they were trees up to 110 feet in height and helped to form the coal deposits of the Carboniferous period. Only one genus has survived to modern times (Equisetum). Horsetails Horsetails (Equisetum) have jointed stems with whorls of thin narrow leaves. In the sporophyte stage, they have a sterile and fertile form. Th ey produce only one type of spore. While the gametophytes produced from the spores appear to be plentiful, the successful reproduction of the sporophyte form is low with most Horsetails reproducing vegetatively. Lycopodiopsida Lycopodiopsida includes the clubmosses (Dendrolycopodium, Diphasiastrum, Lycopodiella, Lycopodium , Spinulum) and Fir-mosses (Huperzia) Clubmosses Clubmosses are evergreen plants that produce only microspores that develop into a gametophyte capable of producing both sperm and egg cells. Club-mosses can produce the spores either in leaf axils or at the top of their stems. Th e spore capsules form in a cone-like structures (strobili) at the top of the plants. -
Chorioactidaceae: a New Family in the Pezizales (Ascomycota) with Four Genera
mycological research 112 (2008) 513–527 journal homepage: www.elsevier.com/locate/mycres Chorioactidaceae: a new family in the Pezizales (Ascomycota) with four genera Donald H. PFISTER*, Caroline SLATER, Karen HANSENy Harvard University Herbaria – Farlow Herbarium of Cryptogamic Botany, Department of Organismic and Evolutionary Biology, Harvard University, 22 Divinity Avenue, Cambridge, MA 02138, USA article info abstract Article history: Molecular phylogenetic and comparative morphological studies provide evidence for the Received 15 June 2007 recognition of a new family, Chorioactidaceae, in the Pezizales. Four genera are placed in Received in revised form the family: Chorioactis, Desmazierella, Neournula, and Wolfina. Based on parsimony, like- 1 November 2007 lihood, and Bayesian analyses of LSU, SSU, and RPB2 sequence data, Chorioactidaceae repre- Accepted 29 November 2007 sents a sister clade to the Sarcosomataceae, to which some of these taxa were previously Corresponding Editor: referred. Morphologically these genera are similar in pigmentation, excipular construction, H. Thorsten Lumbsch and asci, which mostly have terminal opercula and rounded, sometimes forked, bases without croziers. Ascospores have cyanophilic walls or cyanophilic surface ornamentation Keywords: in the form of ridges or warts. So far as is known the ascospores and the cells of the LSU paraphyses of all species are multinucleate. The six species recognized in these four genera RPB2 all have limited geographical distributions in the northern hemisphere. Sarcoscyphaceae ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Sarcosomataceae SSU Introduction indicated a relationship of these taxa to the Sarcosomataceae and discussed the group as the Chorioactis clade. Only six spe- The Pezizales, operculate cup-fungi, have been put on rela- cies are assigned to these genera, most of which are infre- tively stable phylogenetic footing as summarized by Hansen quently collected. -
Clavulinopsis Helvola (Pers.) Corner, Monograph of Clavaria and Allied Genera (Annals of Botany Memoirs No
© Miguel Ángel Ribes Ripoll [email protected] Condiciones de uso Clavulinopsis helvola (Pers.) Corner, Monograph of Clavaria and allied Genera (Annals of Botany Memoirs No. 1): 372 (1950) COROLOGíA Registro/Herbario Fecha Lugar Hábitat MAR-111009 11 11/10/2009 Colllado de las Tres Cruces, Santa Orosia, En un talud en bosque mixto de Leg.: Fermín Pancorbo, Juan Carlos Campos, Juan Yebra de Basa (Huesca) haya (Fagus sylvatica) y abeto Carlos Zamora, Luis Rubio, Jorge Hernanz, Félix 1528 m 30T YN2510 blanco (Abies alba) Mateo, Eliseo Vernis, Santiago García Det.: Miguel Á. Ribes TAXONOMíA Basiónimo: Clavaria helvola Pers. [as 'helveola'], Comm. fung. clav. (Lipsiae): 69 (1797) Citas en listas publicadas: Index of Fungi 2: 19. Posición en la clasificación: Clavariaceae, Agaricales, Agaricomycetidae, Agaricomycetes, Basidiomycota, Fungi Sinónimos: o Clavaria dissipabilis Britzelm., Ber. naturw. Augsburg 29: 289 (1887) o Clavaria flammans Berk., J. Linn. Soc., Bot. 14(1): 350 (1873) o Clavaria helvola Pers., Comm. fung. clav. (Lipsiae): 69 (1797) subsp. Helvola o Clavaria inaequalis sensu auct.; fide Checklist of Basidiomycota of Great Britain and Ireland (2005) o Clavaria inaequalis var. helvola (Pers.) Fr., Elench. fung. (Greifswald) 1: 232 (1828) o Clavaria similis Boud. & Pat., J. Bot. Morot 2: 406 (1888) o Ramariopsis helvola (Pers.) R.H. Petersen, Mycologia 70(3): 668 (1978) DESCRIPCIÓN MACRO Basidioma filiforme, cilíndrico-claviforme o cilíndrico-aplanado, normalmente sinuoso y no ramificado, pero a veces con una pequeña ramificación en el ápice, a veces ligeramente surcado, hasta de 6-7 cm de alto, de color amarillo-anaranjado vivo o pálido, mate, cubierto por una pruina más clara en ejemplares jóvenes, ápice redondeado que se vuelve pardo al envejecer. -
Supplementary Table S2: New Taxonomic Assignment of Sequences of Basal Fungal Lineages
Supplementary Table S2: New taxonomic assignment of sequences of basal fungal lineages. Fungal sequences were subjected to BLAST-N analysis and checked for their taxonomic placement in the eukaryotic guide-tree of the SILVA release 111. Sequences were classified depending on combined results from the methods mentioned above as well as literature searches. Accession Name New classification Clustering of the sequence in the Best BLAST-N hit number based on combined results eukaryotic guide tree of SILVA Name Accession number E.value Identity AB191431 Uncultured fungus Chytridiomycota Chytridiomycota Basidiobolus haptosporus AF113413.1 0.0 91 AB191432 Unculltured eukaryote Blastocladiomycota Blastocladiomycota Rhizophlyctis rosea NG_017175.1 0.0 91 AB252775 Uncultured eukaryote Chytridiomycota Chytridiomycota Blastocladiales sp. EF565163.1 0.0 91 AB252776 Uncultured eukaryote Fungi Nucletmycea_Fonticula Rhizophydium sp. AF164270.2 0.0 87 AB252777 Uncultured eukaryote Chytridiomycota Chytridiomycota Basidiobolus haptosporus AF113413.1 0.0 91 AB275063 Uncultured fungus Chytridiomycota Chytridiomycota Catenomyces sp. AY635830.1 0.0 90 AB275064 Uncultured fungus Chytridiomycota Chytridiomycota Endogone lactiflua DQ536471.1 0.0 91 AB433328 Nuclearia thermophila Nuclearia Nucletmycea_Nuclearia Nuclearia thermophila AB433328.1 0.0 100 AB468592 Uncultured fungus Basal clone group I Chytridiomycota Physoderma dulichii DQ536472.1 0.0 90 AB468593 Uncultured fungus Basal clone group I Chytridiomycota Physoderma dulichii DQ536472.1 0.0 91 AB468594 Uncultured -
2. Typification of Gyromitra Fastigiata and Helvella Grandis
Preliminary phylogenetic and morphological studies in the Gyromitra gigas lineage (Pezizales). 2. Typification of Gyromitra fastigiata and Helvella grandis Nicolas VAN VOOREN Abstract: Helvella fastigiata and H. grandis are epitypified with material collected in the original area. Matteo CARBONE Gyromitra grandis is proposed as a new combination and regarded as a priority synonym of G. fastigiata. The status of Gyromitra slonevskii is also discussed. photographs of fresh specimens and original plates illustrate the article. Keywords: ascomycota, phylogeny, taxonomy, four new typifications. Ascomycete.org, 11 (3) : 69–74 Mise en ligne le 08/05/2019 Résumé : Helvella fastigiata et H. grandis sont épitypifiés avec du matériel récolté dans la région d’origine. 10.25664/ART-0261 Gyromitra grandis est proposé comme combinaison nouvelle et regardé comme synonyme prioritaire de G. fastigiata. le statut de Gyromitra slonevskii est également discuté. Des photographies de spécimens frais et des planches originales illustrent cet article. Riassunto: Helvella fastigiata e H. grandis vengono epitipificate con materiale raccolto nelle rispettive zone d’origine. Gyromitra grandis viene proposta come nuova combinazione e ritenuta sinonimo prioritario di G. fastigiata. Viene inoltre discusso lo status di Gyromitra slonevskii. l’articolo viene corredato da foto di esem- plari freschi e delle tavole originali. Introduction paul-de-Varces, alt. 1160 m, 45.07999° n 5.627088° e, in a mixed for- est, 11 May 2004, leg. e. Mazet, pers. herb. n.V. 2004.05.01. During a preliminary morphological and phylogenetic study in the subgenus Discina (Fr.) Harmaja (Carbone et al., 2018), especially Results the group of species close to Gyromitra gigas (Krombh.) Quél., we sequenced collections of G. -
LUNDY FUNGI: FURTHER SURVEYS 2004-2008 by JOHN N
Journal of the Lundy Field Society, 2, 2010 LUNDY FUNGI: FURTHER SURVEYS 2004-2008 by JOHN N. HEDGER1, J. DAVID GEORGE2, GARETH W. GRIFFITH3, DILUKA PEIRIS1 1School of Life Sciences, University of Westminster, 115 New Cavendish Street, London, W1M 8JS 2Natural History Museum, Cromwell Road, London, SW7 5BD 3Institute of Biological Environmental and Rural Sciences, University of Aberystwyth, SY23 3DD Corresponding author, e-mail: [email protected] ABSTRACT The results of four five-day field surveys of fungi carried out yearly on Lundy from 2004-08 are reported and the results compared with the previous survey by ourselves in 2003 and to records made prior to 2003 by members of the LFS. 240 taxa were identified of which 159 appear to be new records for the island. Seasonal distribution, habitat and resource preferences are discussed. Keywords: Fungi, ecology, biodiversity, conservation, grassland INTRODUCTION Hedger & George (2004) published a list of 108 taxa of fungi found on Lundy during a five-day survey carried out in October 2003. They also included in this paper the records of 95 species of fungi made from 1970 onwards, mostly abstracted from the Annual Reports of the Lundy Field Society, and found that their own survey had added 70 additional records, giving a total of 156 taxa. They concluded that further surveys would undoubtedly add to the database, especially since the autumn of 2003 had been exceptionally dry, and as a consequence the fruiting of the larger fleshy fungi on Lundy, especially the grassland species, had been very poor, resulting in under-recording. Further five-day surveys were therefore carried out each year from 2004-08, three in the autumn, 8-12 November 2004, 4-9 November 2007, 3-11 November 2008, one in winter, 23-27 January 2006 and one in spring, 9-16 April 2005. -
Field Guide to Common Macrofungi in Eastern Forests and Their Ecosystem Functions
United States Department of Field Guide to Agriculture Common Macrofungi Forest Service in Eastern Forests Northern Research Station and Their Ecosystem General Technical Report NRS-79 Functions Michael E. Ostry Neil A. Anderson Joseph G. O’Brien Cover Photos Front: Morel, Morchella esculenta. Photo by Neil A. Anderson, University of Minnesota. Back: Bear’s Head Tooth, Hericium coralloides. Photo by Michael E. Ostry, U.S. Forest Service. The Authors MICHAEL E. OSTRY, research plant pathologist, U.S. Forest Service, Northern Research Station, St. Paul, MN NEIL A. ANDERSON, professor emeritus, University of Minnesota, Department of Plant Pathology, St. Paul, MN JOSEPH G. O’BRIEN, plant pathologist, U.S. Forest Service, Forest Health Protection, St. Paul, MN Manuscript received for publication 23 April 2010 Published by: For additional copies: U.S. FOREST SERVICE U.S. Forest Service 11 CAMPUS BLVD SUITE 200 Publications Distribution NEWTOWN SQUARE PA 19073 359 Main Road Delaware, OH 43015-8640 April 2011 Fax: (740)368-0152 Visit our homepage at: http://www.nrs.fs.fed.us/ CONTENTS Introduction: About this Guide 1 Mushroom Basics 2 Aspen-Birch Ecosystem Mycorrhizal On the ground associated with tree roots Fly Agaric Amanita muscaria 8 Destroying Angel Amanita virosa, A. verna, A. bisporigera 9 The Omnipresent Laccaria Laccaria bicolor 10 Aspen Bolete Leccinum aurantiacum, L. insigne 11 Birch Bolete Leccinum scabrum 12 Saprophytic Litter and Wood Decay On wood Oyster Mushroom Pleurotus populinus (P. ostreatus) 13 Artist’s Conk Ganoderma applanatum -
The Diversity of Basidiomycota Fungi That Have the Potential As a Source of Nutraceutical to Be Developed in the Concept of Integrated Forest Management Poisons
International Journal of Recent Technology and Engineering (IJRTE) ISSN: 2277-3878, Volume-8 Issue-2S, July 2019 The Diversity of Basidiomycota Fungi that Have the Potential as a Source of Nutraceutical to be Developed in the Concept of Integrated Forest Management Mustika Dewi, I Nyoman Pugeg Aryantha, Mamat Kandar straw mushrooms, oyster mushrooms, and shiitake Abstract: The fungus Basidiomycota found in Indonesia have mushrooms. very high diversity, but have not been explored so far. The development of local Basidiomycota mushrooms that Development of fungi Basidiomycota is an alternative as a are cultivated by utilizing space on the forest floor has not source of natural nutraceuticals, especially beta glucan and been done mostly in Indonesia. In several countries such as lovastatin compounds. This compound can be used in the pharmaceutical and food fields. This study aims to obtain Japan, people have long been cultivating shitake mushrooms Basidiomycota fungi isolates that have the potential as a by utilizing forest floors. Reported by (Savoie & Largeteau, nutraceutical source. As the first stage in this research, the 2011) that mushrooms from the Basidiomycota group are activities carried out were exploration, isolation on culture widely produced in forest areas through the utilization of media, and identification of fungi based on genotypic forest floors as a place to grow these fungi which have characters. The results showed that the fungi identified based on economic value quite high by applying the concept of their genotypic characters were Pleurotusostreatus, Ganodermacf, Resinaceum, Lentinulaedodes, micosilviculture. The concept of micosilviculture is a Vanderbyliafraxinea, Auricularia delicate, Pleurotusgiganteus, concept that is applied in the management of integrated Auricularia sp. -
Notes on Some Species of Diphasiastrum
Preslia, Praha, 47: 232 - 240, 1975 Notes on some species of Diphasiastrum Poznamky k n~kterym druhum rodu Dipha11iaatrum Josef Holub HOLUB J. (1975): Notes on some species of Diphasiastrum. - Preslia, Praha, 47: 232- 240. Taxonomic and nomenclatural problems of some species of Diphasiastrum HOLUB are discussed. A special attention is pa.id to the interspecies D. / X / issleri and D. / x / zei leri. Original plants of D. / x / issleri correspond to the combination D. alpinum - D. complanatum. Plants corresponding to the combination D. alpinum - D. tristachyum have been collected in the ~umava Mts. Some taxa described from the subarctic regions of Europe and North America are shown to belong most probably to the neglected interspecies D. / x / zeileri. Botanical I nstitute, Czechoslovak Academy of Sciences, 25~ 43 Prithonice, Czecho.,lovakia. INTRODUCTION This is a second part of my study of the new genus Diphasiastrum (HOLUB 1975), which could not be published in this journal in its entirety. Notes on taxonomy and nomenclature are selected from materials gathered originally for my "Catalogue of Czechoslovak vascular plants". With regard to the character of that work the present observations summarize the results of my own studies and suggests problems to be studied in the future. OBSERVATIONS f!.iphasiastrum alpinum (L.) HOLUB Two varieties have been described in this species (both under the name Lycopodium alpi nttm L.): var. thellungii HERTER from Switzerland and var. planiramulosum TAKEDA from Japan. Both these taxa, especially the first one, require a taxonomic revision; the possibility cannot be exclu<led that they are conspecific with D. / x / issleri. -
S41467-021-25308-W.Pdf
ARTICLE https://doi.org/10.1038/s41467-021-25308-w OPEN Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota ✉ ✉ Luis Javier Galindo 1 , Purificación López-García 1, Guifré Torruella1, Sergey Karpov2,3 & David Moreira 1 Compared to multicellular fungi and unicellular yeasts, unicellular fungi with free-living fla- gellated stages (zoospores) remain poorly known and their phylogenetic position is often 1234567890():,; unresolved. Recently, rRNA gene phylogenetic analyses of two atypical parasitic fungi with amoeboid zoospores and long kinetosomes, the sanchytrids Amoeboradix gromovi and San- chytrium tribonematis, showed that they formed a monophyletic group without close affinity with known fungal clades. Here, we sequence single-cell genomes for both species to assess their phylogenetic position and evolution. Phylogenomic analyses using different protein datasets and a comprehensive taxon sampling result in an almost fully-resolved fungal tree, with Chytridiomycota as sister to all other fungi, and sanchytrids forming a well-supported, fast-evolving clade sister to Blastocladiomycota. Comparative genomic analyses across fungi and their allies (Holomycota) reveal an atypically reduced metabolic repertoire for sanchy- trids. We infer three main independent flagellum losses from the distribution of over 60 flagellum-specific proteins across Holomycota. Based on sanchytrids’ phylogenetic position and unique traits, we propose the designation of a novel phylum, Sanchytriomycota. In addition, our results indicate that most of the hyphal morphogenesis gene repertoire of multicellular fungi had already evolved in early holomycotan lineages. 1 Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Orsay, France. 2 Zoological Institute, Russian Academy of Sciences, St. ✉ Petersburg, Russia. 3 St.