Physiological Responses to Stress in the Vibrionaceae
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Stony Brook University
SSStttooonnnyyy BBBrrrooooookkk UUUnnniiivvveeerrrsssiiitttyyy The official electronic file of this thesis or dissertation is maintained by the University Libraries on behalf of The Graduate School at Stony Brook University. ©©© AAAllllll RRRiiiggghhhtttsss RRReeessseeerrrvvveeeddd bbbyyy AAAuuuttthhhooorrr... Characterization of antimicrobial activity present in the cuticle of American lobster, Homarus americanus A Thesis Presented by Margaret Anne Mars to The Graduate School in Partial Fulfillment of the Requirements for the Degree of Master of Science in Marine and Atmospheric Science Stony Brook University December 2010 Stony Brook University The Graduate School Margaret Anne Mars We, the thesis committee for the above candidate for the Master of Science degree, hereby recommend acceptance of this thesis. Dr. Bassem Allam – Thesis Advisor Associate Professor School of Marine and Atmospheric Science Dr. Anne McElroy – Thesis Advisor Associate Professor School of Marine and Atmospheric Science Dr. Emmanuelle Pale Espinosa Adjunct Professor School of Marine and Atmospheric Science This thesis is accepted by the Graduate School Lawrence Martin Dean of the Graduate School ii Abstract of the Thesis Characterization of antimicrobial activity present in the cuticle of American lobster, Homarus americanus by Margaret Anne Mars Master of Science in Marine and Atmospheric Science Stony Brook University 2010 American lobster is an ecologically and socioeconomically important species. In recent years the species has been affected by disease and the catch in Southern New England has fallen dramatically. In order to fully understand how and why diseases affect lobster populations, it is imperative to fully understand lobster defense mechanisms. The cuticle, previously believed to act only as a physical barrier, has recently been shown to contain antimicrobial activity. -
Evaluation of the Natural Prevalence of Vibrio Spp. in Uruguayan Mussels
XA0100969 EVALUATION OF THE NATURAL PREVALENCE OF VIBRIO SPR IN URUGUAYAN MUSSELS (MYTILUS SP.) AND THEIR CONTROL USING IRRADIATION C. LOPEZ Laboratorio de Tecnicas Nucleares, Facultad de Veterinaria, Universidad de la Republica, Uruguay Abstract The presence of potentially pathogenic bacteria belonging to the Vibrionacea, especially Vibrio cholerae, and of Salmonella spp., was examined in fresh Uruguayan mussels (Mytilus sp.) during two annual seasons. The radiation decimal reduction dose (Dio) of various toxigenic strains of Vibrio cholerae was determined to vary in vitro between 0.11 and 0.19 kGy. These results and those from the examination of natural Vibrio spp. contamination in mussles were used to conclude that 1.0 kGy would be enough to render Uruguayan mussels Vibrio-safe. Mussels irradiated in the shell at the optimal dose survived long enough to allow the eventual introduction of irradiation as an effective intervention measure without affecting local marketing practices, and making it possible to market the fresh mussels live, as required by Uruguayan legislation. INTRODUCTION The Vibrionaceae are a family of facultatively anaerobic, halophilic, Gram-negative rods, polarly flagellated, motile bacteria that comprises 28 species, of which 11 are potential human pathogens (De Paola, 1981). Most of the Vibrio spp. are marine microorganisms, hence their natural occurrence in many raw seafood. Among the most prevalent species of Vibrio is V. parahaemolyticus, a fast growing bacterium that resists high salt concentrations (Battisti, R. and Moretto, E., 1994). It is reported to be the main cause of gastroenteritis in Japan, where there is a large consumption of raw fish. Vibrio vulnificus, another pathogenic species of the Vibrionaceae, is a pleomorphic, short rod that requires high salt concentrations for growth. -
Cryptic Inoviruses Revealed As Pervasive in Bacteria and Archaea Across Earth’S Biomes
ARTICLES https://doi.org/10.1038/s41564-019-0510-x Corrected: Author Correction Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes Simon Roux 1*, Mart Krupovic 2, Rebecca A. Daly3, Adair L. Borges4, Stephen Nayfach1, Frederik Schulz 1, Allison Sharrar5, Paula B. Matheus Carnevali 5, Jan-Fang Cheng1, Natalia N. Ivanova 1, Joseph Bondy-Denomy4,6, Kelly C. Wrighton3, Tanja Woyke 1, Axel Visel 1, Nikos C. Kyrpides1 and Emiley A. Eloe-Fadrosh 1* Bacteriophages from the Inoviridae family (inoviruses) are characterized by their unique morphology, genome content and infection cycle. One of the most striking features of inoviruses is their ability to establish a chronic infection whereby the viral genome resides within the cell in either an exclusively episomal state or integrated into the host chromosome and virions are continuously released without killing the host. To date, a relatively small number of inovirus isolates have been extensively studied, either for biotechnological applications, such as phage display, or because of their effect on the toxicity of known bacterial pathogens including Vibrio cholerae and Neisseria meningitidis. Here, we show that the current 56 members of the Inoviridae family represent a minute fraction of a highly diverse group of inoviruses. Using a machine learning approach lever- aging a combination of marker gene and genome features, we identified 10,295 inovirus-like sequences from microbial genomes and metagenomes. Collectively, our results call for reclassification of the current Inoviridae family into a viral order including six distinct proposed families associated with nearly all bacterial phyla across virtually every ecosystem. -
Dynamics of Coral-Associated Bacterial Communities Acclimated To
www.nature.com/scientificreports OPEN Dynamics of coral-associated bacterial communities acclimated to temperature stress based on Received: 20 June 2017 Accepted: 13 October 2017 recent thermal history Published: xx xx xxxx Jia-Ho Shiu1,2,3, Shashank Keshavmurthy 2, Pei-Wen Chiang2, Hsing-Ju Chen2, Shueh-Ping Lou2, Ching-Hung Tseng4, Hernyi Justin Hsieh5, Chaolun Allen Chen2 & Sen-Lin Tang 1,2,6 Seasonal variation in temperature fuctuations may provide corals and their algal symbionts varying abilities to acclimate to changing temperatures. We hypothesized that diferent temperature ranges between seasons may promote temperature-tolerance of corals, which would increase stability of a bacterial community following thermal stress. Acropora muricata coral colonies were collected in summer and winter (water temperatures were 23.4–30.2 and 12.1–23.1 °C, respectively) from the Penghu Archipelago in Taiwan, then exposed to 6 temperature treatments (10–33 °C). Changes in coral-associated bacteria were determined after 12, 24, and 48 h. Based on 16S rRNA gene amplicons and Illumina sequencing, bacterial communities difered between seasons and treatments altered the dominant bacteria. Cold stress caused slower shifts in the bacterial community in winter than in summer, whereas a more rapid shift occurred under heat stress in both seasons. Results supported our hypothesis that bacterial community composition of corals in winter are more stable in cold temperatures but changed rapidly in hot temperatures, with opposite results for the bacterial communities in summer. We infer that the thermal tolerance ranges of coral-associated bacteria, with a stable community composition, are associated with their short-term (3 mo) seawater thermal history. -
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bioRxiv preprint doi: https://doi.org/10.1101/347021; this version posted June 14, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 2 3 4 5 Re-evaluating the salty divide: phylogenetic specificity of 6 transitions between marine and freshwater systems 7 8 9 10 Sara F. Pavera, Daniel J. Muratorea, Ryan J. Newtonb, Maureen L. Colemana# 11 a 12 Department of the Geophysical Sciences, University of Chicago, Chicago, Illinois, USA 13 b School of Freshwater Sciences, University of Wisconsin Milwaukee, Milwaukee, Wisconsin, USA 14 15 Running title: Marine-freshwater phylogenetic specificity 16 17 #Address correspondence to Maureen Coleman, [email protected] 18 bioRxiv preprint doi: https://doi.org/10.1101/347021; this version posted June 14, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 19 Abstract 20 Marine and freshwater microbial communities are phylogenetically distinct and transitions 21 between habitat types are thought to be infrequent. We compared the phylogenetic diversity of 22 marine and freshwater microorganisms and identified specific lineages exhibiting notably high or 23 low similarity between marine and freshwater ecosystems using a meta-analysis of 16S rRNA 24 gene tag-sequencing datasets. As expected, marine and freshwater microbial communities 25 differed in the relative abundance of major phyla and contained habitat-specific lineages; at the 26 same time, however, many shared taxa were observed in both environments. 27 Betaproteobacteria and Alphaproteobacteria sequences had the highest similarity between 28 marine and freshwater sample pairs. -
The Impact of Environmental Changes on the Microbial Community Dynamics and Abundance of Pathogenic Vibrio Species in Coastal Ecosystems
The Impact of Environmental Changes on the Microbial Community Dynamics and Abundance of Pathogenic Vibrio species in Coastal Ecosystems by Candice Amber Thorstenson a Thesis submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Marine Microbiology Approved Dissertation Committee _____________________________________ Prof. Dr. Matthias Ullrich Jacobs University Bremen Prof. Dr. Frank Oliver Glӧckner Jacobs University Bremen Dr. Mathias Wegner Alfred Wegener Institute for Polar and Marine Research Date of Defense: 26 August 2020 Department of Life Sciences and Chemistry i Table of Contents Summary .......................................................................................................... 1 General Introduction ........................................................................................ 3 The genus Vibrio ............................................................................................................. 5 Key Vibrio Characterization and Isolation Techniques .................................................. 9 Vibrio cholerae ............................................................................................................. 10 Vibrio parahaemolyticus ............................................................................................... 12 Vibrio vulnificus ............................................................................................................ 14 Genetic Modification Technologies Applied to Marine Bacteria ................................ -
Vibrios As Causal Agents of Zoonoses B
Vibrios as causal agents of zoonoses B. Austin To cite this version: B. Austin. Vibrios as causal agents of zoonoses. Veterinary Microbiology, Elsevier, 2010, 140 (3-4), pp.310. 10.1016/j.vetmic.2009.03.015. hal-00556049 HAL Id: hal-00556049 https://hal.archives-ouvertes.fr/hal-00556049 Submitted on 15 Jan 2011 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Accepted Manuscript Title: Vibrios as causal agents of zoonoses Author: B. Austin PII: S0378-1135(09)00119-9 DOI: doi:10.1016/j.vetmic.2009.03.015 Reference: VETMIC 4385 To appear in: VETMIC Received date: 9-1-2009 Revised date: 9-2-2009 Accepted date: 2-3-2009 Please cite this article as: Austin, B., Vibrios as causal agents of zoonoses, Veterinary Microbiology (2008), doi:10.1016/j.vetmic.2009.03.015 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. -
Enterovibrio, Grimontia (Grimontia Hollisae, Formerly Vibrio Hollisae), Listonella, Photobacterium (Photobacterium Damselae
VIBRIOSIS (Non-Cholera Vibrio spp) Genera in the family Vibrionaceae currently include: Aliivibrio, Allomonas, Catenococcus, Enterovibrio, Grimontia (Grimontia hollisae, formerly Vibrio hollisae), Listonella, Photobacterium (Photobacterium damselae, formerly Vibrio damselae), Salinivibrio, and Vibrio species including V. cholerae non-O1/non-O139, V. parahaemolyticus, V. vulnificus, V. fluvialis, V. furnissii, and V. mimicus alginolyticus and V. metschnikovi. (Not all of these have been recognized to cause human illness.) REPORTING INFORMATION • Class B2: Report by the end of the business week in which the case or suspected case presents and/or a positive laboratory result to the local public health department where the patient resides. If patient residence is unknown, report to the local public health department in which the reporting health care provider or laboratory is located. • Reporting Form(s) and/or Mechanism: Ohio Confidential Reportable Disease form (HEA 3334, rev. 1/09), Positive Laboratory Findings for Reportable Disease form (HEA 3333, rev. 8/05), the local health department via the Ohio Disease Reporting System (ODRS) or telephone. • The Centers for Disease Control and Prevention (CDC) requests that states collect information on the Cholera and Other Vibrio Illness Surveillance Report (52.79 E revised 08/2007) (COVIS), available at http://www.cdc.gov/nationalsurveillance/PDFs/CDC5279_COVISvibriosis.pdf. Reporting sites should use the COVIS reporting form to assist in local disease investigation and traceback activities. Information collected from the form should be entered into ODRS and sent to the Ohio Department of Health (ODH). • Additional reporting information, with specifics regarding the key fields for ODRS Reporting can be located in Section 7. AGENTS Vibrio parahaemolyticus; Vibrio cholerae non-O1 (does not agglutinate in O group-1 sera), strains other than O139; Vibrio vulnificus and Photobacterium damselae (formerly Vibrio damselae) and Grimontia hollisae (formerly Vibrio hollisae), V. -
Characteristics of Bacterial Community in Cloud Water at Mt. Tai: Similarity and Disparity Under Polluted and Non-Polluted Cloud Episodes
Characteristics of bacterial community in cloud water at Mt. Tai: similarity and disparity under polluted and non-polluted cloud episodes Min Wei 1, Caihong Xu1, Jianmin Chen1,2,*, Chao Zhu1, Jiarong Li1, Ganglin Lv 1 5 1 Environment Research Institute, School of Environmental Science and Engineering, Shandong University, Ji’nan 250100, China 2 Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP), Fudan Tyndall Centre, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, China 10 Correspondence to: JM.Chen ([email protected]) Abstract: Bacteria are widely distributed in atmospheric aerosols and are indispensable components of clouds, playing an important role in the atmospheric hydrological cycle. However, limited information is 15 available about the bacterial community structure and function, especially for the increasing air pollution in the North China Plain. Here, we present a comprehensive characterization of bacterial community composition, function, variation and environmental influence for cloud water collected at Mt. Tai from 24 Jul to 23 Aug 2014. Using Miseq 16S rRNA gene sequencing, the highly diverse bacterial community in cloud water and the predominant phyla of Proteobacteria, Bacteroidetes, 20 Cyanobacteria and Firmicutes were investigated. Bacteria that survive at low temperature, radiation, and poor nutrient conditions were found in cloud water, suggesting adaptation to an extreme environment. The bacterial gene functions predicted from the 16S rRNA gene using -
Chelonia Mydas) from the Mexican Pacific
ABANICO VETERINARIO ISSN 2448-6132 abanicoacademico.mx/revistasabanico/index.php/abanico-veterinario Abanico Veterinario. January-December 2021; 11:1-13. http://dx.doi.org/10.21929/abavet2021.19 Original Article. Received: 13/12/2020. Accepted: 29/03/2021. Published: 12/04/2021. Code: e2020-101. Biochemical identification of potentially pathogenic and zoonotic bacteria in black turtles (Chelonia mydas) from the Mexican Pacific Identificación bioquímica de bacterias potencialmente patógenas y zoonóticas en las tortugas negras (Chelonia mydas) del Pacífico Mexicano Eduardo Reséndiz1, 2, 3 * ID , Helena Fernández-Sanz 2, 4 iD 1Departamento Académico de Ciencias Marinas y Costeras, Universidad Autónoma de Baja California Sur (UABCS). Carretera al Sur KM 5.5., Apartado Postal 19-B, C.P. 23080, La Paz B.C.S. México. 2Health assessments in sea turtles from Baja California Sur, La Paz B.C.S. México. 3Asociación Mexicana de Veterinarios de Tortugas A.C., Xalapa 91050, Veracruz, México. 4Posgrado en Ciencias Marinas y Costeras (CIMACO) UABCS, Carretera al Sur KM 5.5., Apartado Postal 19-B, C.P. 23080, La Paz B.C.S. México. Responsible author: Eduardo Reséndiz. *Author for correspondence: Eduardo Reséndiz. E-mail: [email protected], [email protected] ABSTRACT Sea turtles naturally have gastrointestinal microbiota; however, opportunistic behavior and pathogenicity of some bacteria have also been reported. Therefore, it is important to generate information on possible risks to turtles and human health. Five monthly field monitoring were carried out with captures of Chelonia mydas in the Ojo de Liebre lagoon complex. Physical examinations were performed and their morphometries were recorded; oral and cloacal swabs were made and sowing in McConkey and TCBS culture media. -
Vibrio Diseases of Marine Fish Populations
HELGOL~NDER MEERESUNTERSUCHUNGEN Helgolander Meeresunters. 37, 265-287 (1984) Vibrio diseases of marine fish populations R. R. Colwell & D. J. Grimes Department of Microbiology, University of Maryland; College Park, MD 20742 USA ABSTRACT: Several Vibrio spp. cause disease in marine fish populations, both wild and cultured. The most common disease, vibriosis, is caused by V. anguillarum. However, increase in the intensity of mariculture, combined with continuing improvements in bacterial systematics, expands the list of Vibrio spp. that cause fish disease. The bacterial pathogens, species of fish affected, virulence mechanisms, and disease treatment and prevention are included as topics of emphasis in this review, INTRODUCTION It is most appropriate that the introductory paper at this Symposium on Diseases of Marine Organisms should be about vibrios. The disease syndrome termed vibriosis was one of the first diseases of marine fish to be described (Sindermann, 1970; Home, 1982). Called "red sore", "red pest", "red spot" and "red disease" because of characteristic hemorrhagic skin lesions, this disease was recognized and described as early as 1718 in Italy, with numerous epizootics being documented throughout the 19th century (Crosa et al., 1977; Sindermann, 1970). Today, while "red sore" is, without doubt, the best understood of the marine bacterial fish diseases, new diseases have been added to the list of those caused by Vibrio spp. The more recently published work describing Vibrio disease, primarily that appear- ing in the literature since 1977, will be the focus of this paper. Bacterial pathogens, the species of fish affected, virulence mechanisms, and disease treatment and prevention are included as topics of emphasis. -
Handbook Version 12
A handbook of diseases of importance to aquaculture in New Zealand B. K. Diggles P. M. Hine S. Handley N. C. Boustead NIWA Science and Technology Series No. 49 2002 Published by NIWA Wellington 2002 Edited and produced by Science Communication, NIWA, PO Box 14-901, Wellington, New Zealand ISSN 1173-0382 ISBN 0-478-23248-9 © NIWA 2002 Citation: Diggles, B.K.; Hine, P.M.; Handley, S.; Boustead, N.C. (2002). A handbook of diseases of importance to aquaculture in New Zealand. NIWA Science and Technology Series No. 49. 200 p. Cover: Eggs of the monogenean ectoparasite Zeuxapta seriolae (see p. 102) from the gills of kingfish. Photo by Ben Diggles. The National Institute of Water and Atmospheric Research is New Zealand’s leading provider of atmospheric, marine, and freshwater science Visit NIWA’s website at http://www.niwa.co.nz 2 Contents Introduction 6 Disclaimer 7 Disease and stress in the aquatic environment 8 Who to contact when disease is suspected 10 Submitting a sample for diagnosis 11 Basic anatomy of fish and shellfish 12 Quick help guide 14 This symbol in the text denotes a disease is exotic to New Zealand Contents colour key: Black font denotes disease present in New Zealand Blue font denotes disease exotic to New Zealand Red font denotes an internationally notifiable disease exotic to New Zealand Diseases of Fishes Freshwater fishes 17 Viral diseases Epizootic haematopoietic necrosis (EHN) 18 Infectious haematopoietic necrosis (IHN) 20 Infectious pancreatic necrosis (IPN)* 22 Infectious salmon anaemia (ISA) 24 Oncorhynchus masou