Pepsinogens and Pepsins'
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Final Thesis
UNDERSTANDING HTLV-I ENZYMOLOGY & PREPARATION AND CHARACTERIZATION OF LEAD INHIBITORS FOR THE TREATMENT OF HTLV-I INFECTION A Dissertation Presented to The Academic Faculty By Kelly Joy Dennison In Partial Fulfillment Of the Requirements for the Degree Doctor of Philosophy in Chemistry Georgia Institute of Technology December 2005 Copyright © 2005 by Kelly Joy Dennison UNDERSTANDING HTLV-I ENZYMOLOGY & PREPARATION AND CHARACTERIZATION OF LEAD INHIBITORS FOR THE TREATMENT OF HTLV-I INFECTION Approved by: Dr. Suzanne B. Shuker, Advisor Dr. Andrew S. Bommarius School of Chemistry and Biochemistry School of Chemical and Biochemical Georgia Institute of Technology Engineering Georgia Institute of Technology Dr. Thomas M. Orlando, Co-Advisor School of Chemistry and Biochemistry Dr. S. Michele Owen Georgia Institute of Technology National Center for HIV, STD, and TB Prevention Dr. Donald F. Doyle Centers for Disease Control & School of Chemistry and Biochemistry Prevention Georgia Institute of Technology Dr. Vicky L. H. Bevilacqua Dr. C. David Sherrill Edgewood Chemical Biological Center School of Chemistry and Biochemistry US Army Georgia Institute of Technology Date approved: August 11, 2005 ii ACKNOWLEDGEMENTS I would like to thank the many people that supported me through this process. To all my family: my parents, Chuck and Joy; my sisters, Gerri and Laurel; and my brother Keary, as well as Kent, Brian, and Brandy; the Chapels; the Bonuras; Tekkie and Chet; Auntie Marie; and my nephews and niece, Patrick, Ryan, Kevin, Kaitlyn, and Riley. Thanks for all your encouragement and/or financial support and most of all, for believing in me. To my friends: thanks for being present. -
Serine Proteases with Altered Sensitivity to Activity-Modulating
(19) & (11) EP 2 045 321 A2 (12) EUROPEAN PATENT APPLICATION (43) Date of publication: (51) Int Cl.: 08.04.2009 Bulletin 2009/15 C12N 9/00 (2006.01) C12N 15/00 (2006.01) C12Q 1/37 (2006.01) (21) Application number: 09150549.5 (22) Date of filing: 26.05.2006 (84) Designated Contracting States: • Haupts, Ulrich AT BE BG CH CY CZ DE DK EE ES FI FR GB GR 51519 Odenthal (DE) HU IE IS IT LI LT LU LV MC NL PL PT RO SE SI • Coco, Wayne SK TR 50737 Köln (DE) •Tebbe, Jan (30) Priority: 27.05.2005 EP 05104543 50733 Köln (DE) • Votsmeier, Christian (62) Document number(s) of the earlier application(s) in 50259 Pulheim (DE) accordance with Art. 76 EPC: • Scheidig, Andreas 06763303.2 / 1 883 696 50823 Köln (DE) (71) Applicant: Direvo Biotech AG (74) Representative: von Kreisler Selting Werner 50829 Köln (DE) Patentanwälte P.O. Box 10 22 41 (72) Inventors: 50462 Köln (DE) • Koltermann, André 82057 Icking (DE) Remarks: • Kettling, Ulrich This application was filed on 14-01-2009 as a 81477 München (DE) divisional application to the application mentioned under INID code 62. (54) Serine proteases with altered sensitivity to activity-modulating substances (57) The present invention provides variants of ser- screening of the library in the presence of one or several ine proteases of the S1 class with altered sensitivity to activity-modulating substances, selection of variants with one or more activity-modulating substances. A method altered sensitivity to one or several activity-modulating for the generation of such proteases is disclosed, com- substances and isolation of those polynucleotide se- prising the provision of a protease library encoding poly- quences that encode for the selected variants. -
Treatment of Cashew Extracts with Aspergillopepsin Reduces Ige Binding to Cashew Allergens
Journal of Applied Biology & Biotechnology Vol. 4 (02), pp. 001-010, March-April, 2016 Available online at http://www.jabonline.in DOI: 10.7324/JABB.2016.40201 Treatment of cashew extracts with Aspergillopepsin reduces IgE binding to cashew allergens Cecily B. DeFreece1, Jeffrey W. Cary2, Casey C. Grimm2, Richard L. Wasserman3, Christopher P Mattison2* 1Department of Biology, Xavier University of Louisiana, New Orleans, LA, USA. 2USDA-ARS, Southern Regional Research Center, New Orleans, LA, USA. 3Allergy Partners of North Texas Research, Department of Pediatrics, Medical City Children’s Hospital, Dallas, Texas, USA. ARTICLE INFO ABSTRACT Article history: Enzymes from Aspergillus fungal species are used in many industrial and pharmaceutical applications. Received on: 21/10/2015 Aspergillus niger and Aspergillus oryzae were cultured on media containing cashew nut flour to identify secreted Revised on: 06/12/2015 proteins that may be useful as future food allergen processing enzymes. Mass-spectrometric analysis of secreted Accepted on: 20/12/2015 proteins and protein bands from SDS-PAGE gels indicated the presence of at least 63 proteins. The majority of Available online: 21/04/2016 these proteins were involved in carbohydrate metabolism, but there were also enzymes involved in lipid and protein metabolism. It is likely that some of these enzymes are specifically upregulated in response to cashew Key words: nut protein, and study of these enzymes could aid our understanding of cashew nut metabolism. Aspergillus, cashew, food Aspergillopepsin from A. niger was one of the proteolytic enzymes identified, and 6 distinct peptides were allergy, immunoglobulin E, matched to this protein providing 22% coverage of the protein. -
Chem331 Tansey Chpt4
3/10/20 Adhesion Covalent Cats - Proteases Roles Secretion P. gingivalis protease signal peptidases Immune Development Response T-cell protease matriptase 4 classes of proteases: Serine, Thiol (Cys), Acid Blood pressure Digestion regulation (Aspartyl), & Metal (Zn) trypsin renin Function Protease ex. Serine Cysteine trypsin, subtilisin, a-lytic Complement protease protease Nutrition Cell fusion protease Fixation hemaglutinase Invasion matrixmetalloproteases CI protease Evasion IgA protease Reproduction Tumor ADAM (a disintegrain and Invasion Adhesion collagenase and metalloproteinase) Fertilization signal peptidase, viral Processing acronase proteases, proteasome Signaling caspases, granzymes Fibrinolysis Pain Sensing tissue plasminogen kallikrein Acid Metallo- actvator protease protease Animal Virus Hormone Replication Processing HIV protease Kex 2 Substrate Specificity Serine Proteases Binding pocket is responsible for affinity Ser, His and Asp in active site Ser Proteases Multiple Mechanism Chymotrypsin Mechanism •Serine not generally an active amino acid for acid/base catalysis Nucleophilic attack •Catalytic triad of serine, histadine and aspartate responsible for the reactivity of serine in this active site •Covalent catalysis, Acid/base Catalysis, transition state bindingand Proximity mechanisms are used •Two phase reaction when an ester is used – burst phase - E +S initial reactions – steady state phase - EP -> E + P (deacylation) – The first step is the covalent catalysis - where the substrate actually is bound to the enzyme itself -
Methods for Production of Recombinant Enzymes for Collagen Degradation
Methods for production of recombinant enzymes for collagen degradation Master thesis Tea Eriksson & Elin Su Faculty of Engineering, LTH Department of Chemistry Division of Pure & Applied Biochemistry Spring 2020 Course: KBKM05 Degree Project in Applied Biochemistry for Engineers Extent: 30 Credits Examiner: Lei Ye Supervisor: Johan Svensson Bonde Assistant supervisor: Mohamad Takwa Project period: 2020.01.20 - 2020.06.08 2 Populärvetenskaplig sammanfattning Metoder för produktion av enzymer för nedbrytning av kollagen Kollagenrika restprodukter kan användas i värdefulla livsmedels- och läkemedelsprodukter. Enzymatisk behandling tillåter kontrollerad och effektiv nedbrytning. I det här projektet har metoder utvecklats och testats för produktion av enzymer i bakterier. Kollagen är det vanligaste proteinet i däggdjur. Proteinet finns i ben, vävnader och senor och ger mekanisk stabilitet och styrka. Den kompakta strukturen av kollagen gör molekylen svår att bryta ner. Det finns stora mängder av många olika restprodukter med höga kollagenhalter som har lågt värde och det finns därför intresse att omvandla kollagenet i de här materialen till värdefulla produkter. Detta skulle minska avfallshanteringen och därmed minska klimatpåverkan. Nedbrutet kollagen kan användas till en mängd olika tillämpningar som i kosttillskott, antioxidanter, hudvårdsprodukter och mervärdesmat. Marknaden drivs främst av stillahavsområdet i Asien där efterfrågan på näringsrik mat och dryck är hög. Åtta enzymer har valts ut och studerats. Fyra av dessa är vanligt förekommande enzymer som bryter bindningar i proteiner. De resterande fyra enzymer är kollagenaser som kan specifikt bryta ner kollagen. Generna för dessa enzymer har optimerats för insättning i cirkulära DNA-molekyler (plasmider) och tillverkning i olika celler. I det här projektet har två strategier utvecklats för produktion av enzymer för nedbrytning av kollagen eller kollagenderiverade produkter. -
Elevated Calcium and Activation of Trypsinogen in Rat Pancreatic Acini Gut: First Published As 10.1136/Gut.41.3.339 on 1 September 1997
Gut 1997; 41: 339–343 339 Elevated calcium and activation of trypsinogen in rat pancreatic acini Gut: first published as 10.1136/gut.41.3.339 on 1 September 1997. Downloaded from T W Frick, C Fernández-del-Castillo, D Bimmler, A L Warshaw Abstract injection of calcium.5 Other experimental pro- Background—Acute pancreatitis associ- tocols used low dose continuous infusions of ated with hypercalcaemia has been de- calcium leading to a twofold increase in serum scribed in humans and experimental ionised calcium. Morphological changes of animals. It has been demonstrated that early acute pancreatitis were seen in several calcium dose dependently accelerates animal species.67 It was shown that hypercal- trypsinogen activation, and it is generally caemia induced a secretory block and accumu- believed that ectopic activation of diges- lation of digestive zymogens within the pancre- tive enzymes is an early event in the atic acinar cell.8 Zymogen activation, in pathophysiology of acute pancreatitis. particular trypsinogen, in homogenates of pan- Aims and methods—Trypsinogen activa- creatic tissue after calcium injection, suggested tion peptide (TAP) was measured in that the combination of zymogen accumulation isolated rat pancreatic acini exposed to and increased calcium leads to increased intra- elevated extracellular calcium in order to pancreatic trypsinogen activation as a very investigate the association between cal- early step in the pathogenesis of acute hyper- cium and trypsinogen activation in living calcaemia induced pancreatitis.58 cells. TAP was determined in the culture Despite this evidence it remained unclear medium either before (extracellular com- whether the ectopic zymogen activation oc- partment) or after (intracellular com- curred as an initial step in the pathogenesis of partment) cell homogenisation. -
Enzyme Potentialities of the Abomasum and Pancreas of the Calf
Enzyme potentialities of the abomasum and pancreas of the calf. II. – Effects of weaning and feeding a liquid supplement to ruminant animals P. Guilloteau, T. Corring, R. Toullec, R. Guilhermet, Marguerite Beaufils, S. Boussion, Mireille Connan, H. Flageul, Anne-Marie Gueugneau, Monique Lesne To cite this version: P. Guilloteau, T. Corring, R. Toullec, R. Guilhermet, Marguerite Beaufils, et al.. Enzyme potentialities of the abomasum and pancreas of the calf. II. – Effects of weaning and feeding a liquid supplement to ruminant animals. Reproduction Nutrition Développement, 1985, 25 (3), pp.481-193. hal-00898291 HAL Id: hal-00898291 https://hal.archives-ouvertes.fr/hal-00898291 Submitted on 1 Jan 1985 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Enzyme potentialities of the abomasum and pancreas of the calf. II. — Effects of weaning and feeding a liquid supplement to ruminant animals P. GUILLOTEAU, T. CORRING R. TOULLEC, R. GUILHERMET Marguerite BEAUFILS S. BOUSSION Mireille CONNAN H. FLAGEUL Anne-Marie GUEUGNEAU Monique LESNE Laboratoire du Jeune Ruminant, I.N.R.A., 65, rue de St-Brieuc, 35042 Rennes Cedex, France. (*) Laboratoire de Physiologie de la Nutrition, I.N.R.A., 78350 Jouy-en-Josas, France. -
DIGESTIVE SYSTEM -3 Emma Jakoi
Introductory Human Physiology ©copyright Emma Jakoi DIGESTIVE SYSTEM -3 Emma Jakoi. Ph.D. LEARNING OBJECTIVES 1. Explain the mechanisms of digestion and absorption of nutrients and identify where these occur within the gastrointestinal tube. 2. Explain the mechanisms of absorption of water and identify where this occurs within the gastrointestinal tube. 3. Explain the underlying mechanism for diarrhea and its causes. SMALL INTESTINE & NUTRIENT ABSORPTION Muscle contractions cause a ripple like movement that carries the food down the small intestine –like a conveyor belt. This transit is normally slow occurring over several hours. As complex food moves within the lumen of the small intestine, it is digested into small molecules. Subsequently these small molecules such as amino acids and sugars are absorbed into the body. These functions are coordinated by hormones. The small intestine is divided into three regions: duodenum, jejunum and ileum. The first, duodenum, is 10 inches long; the other two total 10 feet. The initial segment, the duodenum, receives the acidic chyme. Here the epithelium contains mucous glands and goblet cells which secrete mucus to neutralize the pH of the chyme. The duodenal epithelium cells also secrete hormones (Fig 1), cholecystokinin (CCK) and secretin, which signal the arrival of food to the pancreas, gall bladder, and stomach, respectively (Fig 1). Secretions from the pancreas and gall bladder are delivered directly to the lumen of the duodenum. Chyme G cells of stomach Duodenum CHO fats & peptides acid GLP-1 CCK Secretin Pancreas Pancreas Gall bladder Pancreas Islet Insulin enzymes bile salts HCO3- (Blood, feedforward) Figure 1. Digestive products signal the release of 2 hormones CCK and secretin from the duodenum and glucagon like peptide 1 (GLP-1) from the ileum. -
The Initiating Mechanism of Premature Trypsin Activation in Pancreatitis Kai Yang
Florida State University Libraries Electronic Theses, Treatises and Dissertations The Graduate School 2004 The Initiating Mechanism of Premature Trypsin Activation in Pancreatitis Kai Yang Follow this and additional works at the FSU Digital Library. For more information, please contact [email protected] THE FLORIDA STATE UNIVERSITY COLLEGE OF ARTS AND SCIENCES THE INITIATING MECHANISM OF PREMATURE TRYPSIN ACTIVATION IN PANCREATITIS By KAI YANG A Thesis submitted to the Department of Biological Science in partial fulfillment of the requirements for the degree of Master of Science Degree Awarded: Summer Semester, 2004 The members of the Committee approve the Thesis of Kai Yang defended on 21 April, 2004. Wei-Chun Chin Professor Co - Directing Thesis George Bates Professor Co - Directing Thesis Thomas Keller Committee Member Laura Keller Committee Member Approved: Timothy S.Moerland, Chair, Department of Biological Science The Office of Graduate Studies has verified and approved the above named committee members. ii ACKNOWLEDGEMENTS I would like to express my thanks and appreciation to my advisor, Dr. Wei- Chun Chin for his continuous encouragement and kind help in my research and study. When I was in trouble, he gave me a chance to continue my study. I am also very grateful to Dr. George Bates, my co-major professor for his help. Without their support, I never would have finished my master degree in the department of biological science. I also wish to thank Dr. Thomas Keller and Dr. Laura Keller for their contribution as my committee members. I also would like to express my love and gratitude to my family for their support, patient, kindness, inspiration and love. -
Determination of Three Amino Acids Causing Alteration of Proteolytic Title Activities of Staphylococcal Glutamyl Endopeptidases
NAOSITE: Nagasaki University's Academic Output SITE Determination of three amino acids causing alteration of proteolytic Title activities of staphylococcal glutamyl endopeptidases. Nemoto, Takayuki K; Ono, Toshio; Shimoyama, Yu; Kimura, Shigenobu; Author(s) Ohara-Nemoto, Yuko Citation Biological chemistry, 390(3), pp.277-285; 2009 Issue Date 2009-03 URL http://hdl.handle.net/10069/23192 Right Walter de Gruyter. This document is downloaded at: 2020-09-17T22:23:39Z http://naosite.lb.nagasaki-u.ac.jp Determination of three amino acids that caused the alteration of proteolytic activities of staphylococcal glutamyl endopeptidases Takayuki K. Nemoto1, *, Toshio Ono1, Yu Shimoyama2, Shigenobu Kimura2 and Yuko Ohara-Nemoto1 1 Department of Oral Molecular Biology, Course of Medical and Dental Sciences, Nagasaki University Graduate School of Biomedical Sciences, Nagasaki 852-8588 Japan 2 Department of Oral Microbiology, Iwate Medical University School of Dentistry, Morioka, 020-8505 Japan *Corresponding author T. K. Nemoto, Department of Oral Molecular Biology, Course of Medical and Dental Sciences, Nagasaki University Graduate School of Biomedical Sciences, Nagasaki 852-8588, Japan Fax: +81 95 819 7640, Tel: +81 95 819 7642, E-mail: [email protected] Running title: Amino acid substitutions of V8 protease 1 Abstract Staphylococcus aureus, Staphylococcus epidermidis and Staphylococcus warneri secrete glutamyl endopeptidases, designated GluV8, GluSE and GluSW, respectively. The order of their protease activities was GluSE<GluSW<<GluV8. The present study investigated the mechanism that causes these differences. Expression of chimeric proteins between GluV8 and GluSE revealed that the difference was primarily attributed to amino acids at residues 170-195, which defined the intrinsic protease activity, and additionally to residues 119-169, which affected the proteolysis sensitivity. -
Apical Secretion of Lysosomal Enzymes in Rabbit Pancreas Occurs Via a Secretagogue Regulated Pathway and Is Increased After Pancreatic Duct Obstruction
Apical secretion of lysosomal enzymes in rabbit pancreas occurs via a secretagogue regulated pathway and is increased after pancreatic duct obstruction. T Hirano, … , M Saluja, M L Steer J Clin Invest. 1991;87(3):865-869. https://doi.org/10.1172/JCI115091. Research Article Lysosomal hydrolases such as cathepsin B are apically secreted from rabbit pancreatic acinar cells via a regulated as opposed to a constitutive pathway. Intravenous infusion of the cholecystokinin analogue caerulein results in highly correlated apical secretion of digestive and lysosomal enzymes, suggesting that they are discharged from the same presecretory compartment (zymogen granules). Lysosomal enzymes appear to enter that compartment as a result of missorting. After 7 h of duct obstruction is relieved, caerulein-stimulated apical secretion of cathepsin B and amylase is increased, but the ratio of cathepsin B to amylase secretion is not different than that following caerulein stimulation of animals never obstructed. These findings indicate that duct obstruction causes an increased amount of both lysosomal and digestive enzymes to accumulate within the secretagogue releasable compartment but that duct obstruction does not increase the degree of lysosomal enzyme missorting into that compartment. Pancreatic duct obstruction causes lysosomal hydrolases to become colocalized with digestive enzymes in organelles that, in size and distribution, resemble zymogen granules but that are not subject to secretion in response to secretagogue stimulation. These organelles may be of importance in the development of pancreatitis. Find the latest version: https://jci.me/115091/pdf Apical Secretion of Lysosomal Enzymes in Rabbit Pancreas Occurs Via a Secretagogue Regulated Pathway and Is Increased after Pancreatic Duct Obstruction T. -
Crystal Structure of the Zymogen Form of the Group a Streptococcus Virulence Factor Speb: an Integrin-Binding Cysteine Protease
Crystal structure of the zymogen form of the group A Streptococcus virulence factor SpeB: An integrin-binding cysteine protease Todd F. Kagawa*, Jakki C. Cooney†, Heather M. Baker*, Sean McSweeney‡, Mengyao Liu§¶, Siddeswar Gubba§, James M. Musser§¶, and Edward N. Baker*ʈ** *School of Biological Sciences and ʈDepartment of Chemistry, University of Auckland, Private Bag 92–019, Auckland, New Zealand; †Institute of Molecular Biosciences, Massey University, Palmerston North, New Zealand; ‡European Molecular Biology Laboratory Grenoble Outstation, 6 Av. J. Horowitz, Grenoble 38042, France; §Institute of Human Bacterial Pathogenesis, Department of Pathology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030; and ¶Laboratory of Human Bacterial Pathogenesis, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, 903 South 4th Street, Hamilton, MT 59840 Communicated by Richard M. Krause, National Institutes of Health, Bethesda, MD, December 16, 1999 (received for review October 25, 1999) Pathogenic bacteria secrete protein toxins that weaken or disable The enzyme has fibrinolytic activity and causes myocardial their host, and thereby act as virulence factors. We have deter- necrosis when injected into rabbits (11). It also has been shown mined the crystal structure of streptococcal pyrogenic exotoxin B to trigger apoptosis (12), although the exact role of this process (SpeB), a cysteine protease that is a major virulence factor of the in pathogenesis is not known. Importantly, most strains of S. human pathogen Streptococcus pyogenes and participates in in- pyogenes that are associated with severe invasive disease express vasive disease episodes, including necrotizing fasciitis. The struc- a variant of SpeB that binds to integrins, which may be linked to ture, determined for the 40-kDa precursor form of SpeB at 1.6-Å their pathogenesis (13).