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National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
UNITED NATIONS ENVIRONMENT PROGRAM MEDITERRANEAN ACTION PLAN REGIONAL ACTIVITY CENTRE FOR SPECIALLY PROTECTED AREAS National monitoring program for biodiversity and non-indigenous species in Egypt PROF. MOUSTAFA M. FOUDA April 2017 1 Study required and financed by: Regional Activity Centre for Specially Protected Areas Boulevard du Leader Yasser Arafat BP 337 1080 Tunis Cedex – Tunisie Responsible of the study: Mehdi Aissi, EcApMEDII Programme officer In charge of the study: Prof. Moustafa M. Fouda Mr. Mohamed Said Abdelwarith Mr. Mahmoud Fawzy Kamel Ministry of Environment, Egyptian Environmental Affairs Agency (EEAA) With the participation of: Name, qualification and original institution of all the participants in the study (field mission or participation of national institutions) 2 TABLE OF CONTENTS page Acknowledgements 4 Preamble 5 Chapter 1: Introduction 9 Chapter 2: Institutional and regulatory aspects 40 Chapter 3: Scientific Aspects 49 Chapter 4: Development of monitoring program 59 Chapter 5: Existing Monitoring Program in Egypt 91 1. Monitoring program for habitat mapping 103 2. Marine MAMMALS monitoring program 109 3. Marine Turtles Monitoring Program 115 4. Monitoring Program for Seabirds 118 5. Non-Indigenous Species Monitoring Program 123 Chapter 6: Implementation / Operational Plan 131 Selected References 133 Annexes 143 3 AKNOWLEGEMENTS We would like to thank RAC/ SPA and EU for providing financial and technical assistances to prepare this monitoring programme. The preparation of this programme was the result of several contacts and interviews with many stakeholders from Government, research institutions, NGOs and fishermen. The author would like to express thanks to all for their support. In addition; we would like to acknowledge all participants who attended the workshop and represented the following institutions: 1. -
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Contributions to Zoology, 67 (4) 223-235 (1998) SPB Academic Publishing bv, Amsterdam Optics and phylogeny: is there an insight? The evolution of superposition eyes in the Decapoda (Crustacea) Edward Gaten Department of Biology, University’ ofLeicester, Leicester LEI 7RH, U.K. E-mail: [email protected] Keywords: Compound eyes, superposition optics, adaptation, evolution, decapod crustaceans, phylogeny Abstract cannot normally be predicted by external exami- nation alone, and usually microscopic investiga- This addresses the of structure and in paper use eye optics the tion of properly fixed optical elements is required construction of and crustacean phylogenies presents an hypoth- for a complete diagnosis. This largely rules out esis for the evolution of in the superposition eyes Decapoda, the use of fossil material in the based the of in comparatively on distribution eye types extant decapod fami- few lies. It that arthropodan specimens where the are is suggested reflecting superposition optics are eyes symplesiomorphic for the Decapoda, having evolved only preserved (Glaessner, 1969), although the optics once, probably in the Devonian. loss of Subsequent reflecting of some species of trilobite have been described has superposition optics occurred following the adoption of a (Clarkson & Levi-Setti, 1975). Also the require- new habitat (e.g. Aristeidae,Aeglidae) or by progenetic paedo- ment for good fixation and the fact that complete morphosis (Paguroidea, Eubrachyura). examination invariably involves the destruction of the specimen means that museum collections Introduction rarely reveal enough information to define the optics unequivocally. Where the optics of the The is one of the compound eye most complex component parts of the eye are under investiga- and remarkable not on of its fixation organs, only account tion, specialised to preserve the refrac- but also for the optical precision, diversity of tive properties must be used (Oaten, 1994). -
Stimulation of Filter Feeding by Amino Acids in Three Porcelain Crab Species: Petrolisthes Cinctipes, Petrolisthes Eriomerus, and Pachycheles Rudis
Stimulation of filter feeding by amino acids in three porcelain crab species: Petrolisthes cinctipes, Petrolisthes eriomerus, and Pachycheles rudis Sarah Green Exploratory 2, Adaptations ofMarine Mammals, Prof. Charlie Hunter Oregon Institute ofMarine Biology, University of Oregon, Charleston, Oregon 97420 Introduction Petrolisthes cinctipes, a species ofporcelain crab, is commonly found in the higher to mid-intertidal zones ofthe rocky shores ofOregon (Wicksten, 1973). Petrolisthes eriomerus and Pachycheles rudis, the other two species ofporcelain crab found on the Oregon coast can be found in the low intertidal zone. All three species can be found under rocks and among mussels in mussel beds (Sept, 1999). The three species ofporcelain crab filter feed, fanning plankton and detritus (Petrolisthes cinctipes and Pachycheles rudis) from the water, or pelagic diatoms, benthic diatoms, and green algal filaments from the water (Petrolisthes eriomerus) (MagGinite, 1937; Wicksten, 1973). The mechanics offilter feeding in porcelain crabs has been thoroughly documented by Wicksten (1973). Food particles can be trapped by alternately flexing the endopodites ofthe third maxillapeds. The food particles are then removed from the setae on the third maxillapeds by the setose ends ofthe second maxillapeds. Food particles are then selected and sorted by the inner mouth parts. Little research has been reported on compounds promoting feeding behavior in porcelain crabs. L-tyrosine has been shown to elicit a feeding response in Petrolisthes cinctipes, as have other amino acids. As there are no particles in the water when testing an amino acid, chemoreception ofsmall compounds must stimulate the feeding response (Hartman et aI., 1977). I hypothesize that the stimulation ofthe feeding response in Petrolisthes cinctipes, Petrolisthes eriomerus, and Pachycheles rudis will differ in response to various amino acids because ofthe their location in the intertidal. -
The Status of Sabellaria Spinulosa Reef Off the Moray Firth and Aberdeenshire Coasts and Guidance for Conservation of the Species Off the Scottish East Coast
The Status of Sabellaria spinulosa Reef off the Moray Firth and Aberdeenshire Coasts and Guidance for Conservation of the Species off the Scottish East Coast Research Summary Scottish Marine and Freshwater Science Vol 11 No 17 The Status of Sabellaria spinulosa Reef off the Moray Firth and Aberdeenshire Coasts and Guidance for Conservation of the Species off the Scottish East Coast B Pearce and J Kimber Introduction and Methodology Sabellaria spinulosa is a gregarious tube dwelling marine polychaete that is known to form extensive reef habitats across Europe. The reef habitats formed by S. spinulosa represent an important habitat for a variety of marine fauna and are thought to provide ecosystem services including the provision of feeding and nursery grounds for some fish species. S. spinulosa reefs have been identified as a priority for protection under the OSPAR Convention for the Protection of the Marine Environment of the North East Atlantic and Annex I of the Habitats Directive, in part due to the recognised decline in this habitat across Europe. Until recently, there was little evidence that this habitat occurred in Scottish waters. However, S. spinulosa aggregations with reef-like properties were observed repeatedly between 2011 and 2017 in seabed imagery collected through a variety of sources from the east coast of Scotland. The Scottish Government commissioned this research to assess the conservation status of the newly discovered S. spinulosa habitats and to develop guidance for the future management of this habitat on the east coast of Scotland. Video footage and still images collected from four surveys and ROV clips collected from a fifth, undertaken between 2011 and 2017 (Figure 1) were analysed comprehensively in accordance with established National Marine Biological Analytical Quality Control (NMBAQC) methodologies. -
The Mediterranean Decapod and Stomatopod Crustacea in A
ANNALES DU MUSEUM D'HISTOIRE NATURELLE DE NICE Tome V, 1977, pp. 37-88. THE MEDITERRANEAN DECAPOD AND STOMATOPOD CRUSTACEA IN A. RISSO'S PUBLISHED WORKS AND MANUSCRIPTS by L. B. HOLTHUIS Rijksmuseum van Natuurlijke Historie, Leiden, Netherlands CONTENTS Risso's 1841 and 1844 guides, which contain a simple unannotated list of Crustacea found near Nice. 1. Introduction 37 Most of Risso's descriptions are quite satisfactory 2. The importance and quality of Risso's carcino- and several species were figured by him. This caused logical work 38 that most of his names were immediately accepted by 3. List of Decapod and Stomatopod species in Risso's his contemporaries and a great number of them is dealt publications and manuscripts 40 with in handbooks like H. Milne Edwards (1834-1840) Penaeidea 40 "Histoire naturelle des Crustaces", and Heller's (1863) Stenopodidea 46 "Die Crustaceen des siidlichen Europa". This made that Caridea 46 Risso's names at present are widely accepted, and that Macrura Reptantia 55 his works are fundamental for a study of Mediterranean Anomura 58 Brachyura 62 Decapods. Stomatopoda 76 Although most of Risso's descriptions are readily 4. New genera proposed by Risso (published and recognizable, there is a number that have caused later unpublished) 76 authors much difficulty. In these cases the descriptions 5. List of Risso's manuscripts dealing with Decapod were not sufficiently complete or partly erroneous, and Stomatopod Crustacea 77 the names given by Risso were either interpreted in 6. Literature 7S different ways and so caused confusion, or were entirely ignored. It is a very fortunate circumstance that many of 1. -
109 Annotated Checklist Of
THE RAFFLES BULLETIN OF ZOOLOGY 2010 Supplement No. 23: 109–129 Date of Publication: 31 Oct.2010 © National University of Singapore ANNOTATED CHECKLIST OF ANOMURAN DECAPOD CRUSTACEANS OF THE WORLD (EXCLUSIVE OF THE KIWAOIDEA AND FAMILIES CHIROSTYLIDAE AND GALATHEIDAE OF THE GALATHEOIDEA) PART II – PORCELLANIDAE Masayuki Osawa Research Center for Coastal Lagoon and Environments, Shimane University, 1060 Nishikawatsu-cho, Matsue, Shimane 690-8504, Japan Email: [email protected] Patsy A. McLaughlin Shannon Point Marine Center, Western Washington University, 1900 Shannon Point Road, Anacortes, WA 98221-4042, USA Email: hermit@fi dalgo.net INTRODUCTION Porcellanidae Haworth, 1825 = Porcellaniens H. Milne Edwards, 1837 Ng et al. (2008) and McLaughlin et al. (this volume) referred = Porcellaniadae Randall, 1840 to the “windows” to the literature and the “springboards” for = Porcellanodea Henderson 1888 associating species with their scientifi c names that provided = Porcellainea Holmes, 1900 the foundations for subsequent brachyuran, paguroid and lithodoid research. For the porcellanids, one treatise in particular has provided a similar base upon which virtually all DESCRIPTIVE TERMS AND CURRENT STATUS subsequent porcellanid reports have been patterned. Despite its regional focus, Haig’s (1960) monograph of eastern General morphology. – The general body shape is crab- Pacifi c species included 87 of the 225 species estimated to like and the carapace is well calcifi ed. Regions of the dorsal be present worldwide at the time (Chace, 1951). During the integument are not usually well defi ned. The anterior margin last half century the number of genera has increased from of the carapace is produced into a short rostrum or rostral 14 prior to Haig’s (1960) monograph to 30 and the number lobe. -
(Marmara Sea) and Ecological Characteristics of Their Habitats
RESEARCH ARTICLE Eur J Biol 2017; 76(1): 20-5 Decapod Crustaceans in the Marmara Island (Marmara Sea) and Ecological Characteristics of Their Habitats Begum Ayfer, Husamettin Balkis, Aysegul Mulayim* Istanbul University, Faculty of Science, Department of Biology, Istanbul, Turkey Please cite this article as: Ayfer B, Balkis H, Mulayim A. Decapod Crustaceans in the Marmara Island (Marmara Sea) and Ecological Characteristics of Their Habitats. Eur J Biol 2017; 76(1): 20-5. ABSTRACT We have performed series of analyses to identify decapod crustaceans inhabiting the littoral zone of the Marmara Island and to study specific ecological characteristics of the habitat. Samples of decapod crustaceans species were collected from 12 stations (6 onshore, 6 offshore) on May 12-17, 2008 and November 17-22, 2008. A total of 17 species and 1199 specimens of decapod crustaceans were recorded. Eigth species (A. lacazei, N. norvegicus, P. bluteli, P. longimana, P. platycheles, D. pugilator, D. personata and L. vernalis) have been reported in the littoral zone of Marmara Island for the first time in this study. Also our study also sheds light on some ecological properties (temperature, salinity, dissolved oxygen) of the habitats of the species from the littoral zone of the Marmara Island. Keywords: Ecology, decapoda, crustacea, Marmara Island, The Sea of Marmara INTRODUCTION The first study at the island was carried out by Ostrou- moff (3,4) followed by studies by Okuş (5), Yüksek (6) The Archipelago in the Sea of Marmara consisting of and Balkıs (7). small and large islands located southwest of the Sea of Marmara and the northwest of the Kapıdağ Peninsula MATERIALS AND METHODS are referred to as the Islands of Marmara. -
How to Become a Crab: Phenotypic Constraints on a Recurring Body Plan
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 25 December 2020 doi:10.20944/preprints202012.0664.v1 How to become a crab: Phenotypic constraints on a recurring body plan Joanna M. Wolfe1*, Javier Luque1,2,3, Heather D. Bracken-Grissom4 1 Museum of Comparative Zoology and Department of Organismic & Evolutionary Biology, Harvard University, 26 Oxford St, Cambridge, MA 02138, USA 2 Smithsonian Tropical Research Institute, Balboa–Ancon, 0843–03092, Panama, Panama 3 Department of Earth and Planetary Sciences, Yale University, New Haven, CT 06520-8109, USA 4 Institute of Environment and Department of Biological Sciences, Florida International University, Biscayne Bay Campus, 3000 NE 151 Street, North Miami, FL 33181, USA * E-mail: [email protected] Summary: A fundamental question in biology is whether phenotypes can be predicted by ecological or genomic rules. For over 140 years, convergent evolution of the crab-like body plan (with a wide and flattened shape, and a bent abdomen) at least five times in decapod crustaceans has been known as ‘carcinization’. The repeated loss of this body plan has been identified as ‘decarcinization’. We offer phylogenetic strategies to include poorly known groups, and direct evidence from fossils, that will resolve the pattern of crab evolution and the degree of phenotypic variation within crabs. Proposed ecological advantages of the crab body are summarized into a hypothesis of phenotypic integration suggesting correlated evolution of the carapace shape and abdomen. Our premise provides fertile ground for future studies of the genomic and developmental basis, and the predictability, of the crab-like body form. Keywords: Crustacea, Anomura, Brachyura, Carcinization, Phylogeny, Convergent evolution, Morphological integration 1 © 2020 by the author(s). -
A Comparative Analysis of Morphological, Physiological, And
AN ABSTRACT OF THE THESIS OF Jonathon Harris Stillman for the degree of Doctor of Philosophy in Zoology presented on December 4, 1998. Title: A Comparative Analysis of Morphological, Physiological, and Biochemical Adaptation to Abiotic Stress in Intertidal Porcelain Crabs, Genus Petrolisthes. Redacted for Privacy Abstract approved: George N. Somero Organismal tolerance to abiotic environmental stresses contributes significantly to setting the distribution limits of organisms, as demonstrated by vertical zonation patterns in the marine intertidal zone. In this thesis, the ultimate (evolutionary) and proximate (mechanistic) causes of tolerance to temperature and emersion stresses associated with the intertidal zone were examined using porcelain crabs, genus Petrolisthes. Species of Petrolisthes from intertidal and subtidal microhabitats of four biogeographic regions of the Eastern Pacific were used in phylogenetically-based comparative analyses of morphological, physiological, and biochemical adaptation to environmental stress. A phylogenetic tree based on the sequence of the 16sRNA gene was developed to facilitate these analyses. Organismal thermal tolerance limits are adapted to match maximal microhabitat temperatures. Acclimation of thermal tolerance limits suggests that temperate intertidal zone species are living close to their thermal maximum in nature. Respiratory responses to emersion vary among species from different vertical zones. Experimental examination of oxygen consumption rates and lactate accumulation during emersion suggests that intertidal species are able to respire in air using thin membranous regions on the ventral meral segments of their legs (leg membranes). Leg membrane size is positively correlated with body size across species, but not within a single species. Evolutionary analyses indicate that leg membranes may not have evolved for purposes of aerial respiration, but their presence may have allowed intertidal and subtidal species to achieve larger body sizes and higher metabolic rates. -
Seasonal Variation in Community Structure and Recruitment of Benthic Decapods in a Sub-Tidal Cobble Habitat
MARINE ECOLOGY PROGRESS SERIES Vol. 206: 181–191, 2000 Published November 3 Mar Ecol Prog Ser Seasonal variation in community structure and recruitment of benthic decapods in a sub-tidal cobble habitat Martin Robinson*, Oliver Tully Department of Zoology, Trinity College, Dublin, Ireland ABSTRACT: Quantitative suction samples of benthic decapod fauna were taken in the south of Ireland during 1997. Some species settled into the area, but failed to persist to the first winter, while others were present in high numbers throughout the year. The duration of settlement was species- specific, ranging from several weeks to several months. Body size at settlement decreased with increasing temperature during larval development. Growth potential and early mortality of a number of decapod species was examined by separation of successive moult instars from length-frequency distributions. Seasonal lows in abundance and biomass of young of the year and for previously estab- lished decapod individuals were identified at the end of July and early August, which may represent the most suitable time to release juveniles for stock-enhancement purposes. Community structure differed between settlement season and over-wintering periods. Young-of-the-year community structure differed from that of previously established individuals, with higher abundance and num- ber of species recorded for the former. The data represent a baseline study of a widely distributed community and may support further work on species interactions, improving the accuracy of predic- tion of annual recruitment fluctuations. KEY WORDS: Community · Decapod · Recruitment · Seasonal variation Resale or republication not permitted without written consent of the publisher INTRODUCTION strong 1995, Pile et al. -
The Bulletin of Zoological Nomenclature, Vol19, Part 3
Volume 19. Part 3. 28$. May, 1962 pp. 129-192. THE BULLETIN OF ZOOLOGICAL NOMENCLATURE The Official Organ of THE INTERNATIONAL COMMISSION ON ZOOLOGICAL NOMENCLATURE Contents Page Notices prescribed by the International Congress of Zoology : Date of commencement by the International Commission on Zoological Nomenclature of voting on applications published in the Bulletin of Zoological Nomenclature 129 Notice of the possible use by the International Commission on Zoological Nomenclature of its plenary powers in certain cases 129 (icontinued inside back wrapper) LONDON: Printed by Order of the International Trust for Zoological Nomenclature and Sold on behalf of the International Commission on Zoological Nomenclature by the International Trust at its Publications Office, 19, Belgrave Square, London, S.W.I 1962 Price Three Pounds (All rights reserved) Original from and digitized by National University of Singapore Libraries INTERNATIONAL COMMISSION ON ZOOLOGICAL NOMENCLATURE A. The Officers of the Commission President-. Professor James Chester Bradley (Cornell University, Ithaca, N.T., U.S.A.) (12 August 1953) Vice-President: Senhor Dr. Afranio do Amaral (Sao Paulo, Brazil) (12 August 1953) Secretary: Mr. N. D. Riley (British Museum (Natural History), London) (23 July 1958) Assistant Secretary: Dr. W. E. China (British Museum (Natural History), Cromwell Road, London, S.W. 7) B. The Members of the Commission (Arranged in order of precedence by reference to date of election or of most recent re-election, as prescribed by the International Congress of Zoology) Senhor Dr. Afranio do Amakal (S. Paulo, Brazil) (12 August 1953) (Vice-President) Professor J. Chester Bradley (Cornell University, Ithaca, N.Y., U.S.A.) (12 August 1953) (President) Professor Harold E. -
The Porcelain Crab Transcriptome and PCAD, the Porcelain Crab Microarray and Sequence Database
The Porcelain Crab Transcriptome and PCAD, the Porcelain Crab Microarray and Sequence Database Abderrahmane Tagmount1, Mei Wang2, Erika Lindquist2, Yoshihiro Tanaka1, Kristen S. Teranishi1, Shinichi Sunagawa3, Mike Wong4, Jonathon H. Stillman1,5* 1 Romberg Tiburon Center and Department of Biology, San Francisco State University, Tiburon, California, United States of America, 2 Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America, 3 School of Natural Sciences, University of California Merced, Merced, California, United States of America, 4 Center for Computing in the Life Sciences, San Francisco State University, San Francisco, California, United States of America, 5 Department of Integrative Biology, University of California, Berkeley, California, United States of America Abstract Background: With the emergence of a completed genome sequence of the freshwater crustacean Daphnia pulex, construction of genomic-scale sequence databases for additional crustacean sequences are important for comparative genomics and annotation. Porcelain crabs, genus Petrolisthes, have been powerful crustacean models for environmental and evolutionary physiology with respect to thermal adaptation and understanding responses of marine organisms to climate change. Here, we present a large-scale EST sequencing and cDNA microarray database project for the porcelain crab Petrolisthes cinctipes. Methodology/Principal Findings: A set of ,30K unique sequences (UniSeqs) representing ,19K clusters were generated from ,98K high quality ESTs from a set of tissue specific non-normalized and mixed-tissue normalized cDNA libraries from the porcelain crab Petrolisthes cinctipes. Homology for each UniSeq was assessed using BLAST, InterProScan, GO and KEGG database searches. Approximately 66% of the UniSeqs had homology in at least one of the databases.