Immunology: Unit 3: Antigens; Ug Sem 4(H)
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Evaluation of T-Cell and B-Cell Epitopes and Design of Multivalent Vaccines Against Htlv-1 Diseases
EVALUATION OF T-CELL AND B-CELL EPITOPES AND DESIGN OF MULTIVALENT VACCINES AGAINST HTLV-1 DISEASES DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Roshni Sundaram, M.S. * * * * * The Ohio State University 2003 Dissertation Committee: Approved by Professor Pravin T.P. Kaumaya, Adviser Professor Christopher M. Walker Adviser Professor Neil R. Baker Department of Microbiology Professor Marshall V. Williams ABSTRACT Human T-cell lymphotropic virus type I (HTLV-1) is a C type retrovirus that is the causative agent of an aggressive T-cell malignancy, adult T-cell leukemia/lymphoma (ATLL). The virus is also implicated in a number of inflammatory disorders, the most prominent among them being HTLV-1 associated myelopathy or tropical spastic paraparesis (HAM/TSP). HTLV-1, like many viruses that cause chronic infection, has adapted to persist in the face of an active immune response in infected individuals. The viral transactivator Tax is the primary target of the cellular immune response and humoral responses are mainly directed against the envelope protein. Vaccination against HTLV-1 is a feasible option as there is very little genetic and antigenic variability. Vaccination regimes against chronic viruses must be aimed at augmenting the immune response to a level that is sufficient to clear the virus. This requires that the vaccine delivers a potent stimulus to the immune system that closely resembles natural infection to activate both the humoral arm and the cellular arm. It is also clear that multicomponent vaccines may be more beneficial in terms of increasing the breadth of the immune response as well as being applicable in an outbred population. -
Monoclonal Antibody to Macrophages (Haematopoiesis Associated) - FITC
OriGene Technologies, Inc. OriGene Technologies GmbH 9620 Medical Center Drive, Ste 200 Schillerstr. 5 Rockville, MD 20850 32052 Herford UNITED STATES GERMANY Phone: +1-888-267-4436 Phone: +49-5221-34606-0 Fax: +1-301-340-8606 Fax: +49-5221-34606-11 [email protected] [email protected] BM4022F Monoclonal Antibody to Macrophages (Haematopoiesis associated) - FITC Alternate names: Macrophage marker Quantity: 0.2 mg Concentration: 0.4 mg/ml Background: 25F9 is associated with well-differentiated tissue macrophages both in normal and diseased tissues independently of the presence or absence of inflammation. The antigen is a 86kDa membrane protein, the epitope has not been further characterized. Host / Isotype: Mouse / IgG1 Recommended Isotype SM10F (for use in human samples) Controls: Clone: 25F9 Immunogen: Cultured human monocytes. Format: State: Liquid purified Ig fraction. Purification: Affinity chromatography. Buffer System: PBS buffer pH 7.2 with 0.09% sodium azide as preservative and 10 mg/ml BSA as stabilizer. Label: FITC Applications: Has been described to work in FACS. Antigen Distribution on Isolated cells and Tissue sections: Absent on freshly isolated monocytes and other blood cells; present on 40 - 50% of human monocytes after 6-7 day culture, also positive on some melanoma and carcinoma cell lines. Kupffer cells, histiocytes (skin), macrophages of the thymus, in the germinal centres of lymph nodes and spleen, in mamma carcinoma, melanoma, osteocarcinoma and gastric cancer; excema, sarcoidosis, BCG granuloma; synovial lining cells, tuberculoid leprosy: no expression in lepramatous leprosy. Other markers also used in the above studies include RM3/1, 27E10, G16/1, S36.48 and 8-5C2 in various combinations. -
Difference Between Antigen and Immunogen What Is an Antigen?
Difference Between Antigen and Immunogen www.differencebetween.com Key Difference - Antigen vs Immunogen Immunology is a branch of medicine and biology and is concerned about all aspects of the immune system in organisms. This is a much studied as it is vital to identify and assess the manner in which an organism protects itself against a foreign invasion. An immunological response is initiated upon the entry of a foreign entity which results in a cascade of reactions downstream to degrade or eliminate the foreign entity. An antigen is a foreign body or a molecule, which has the ability to bind to the antibody produced by the host in response to the recognition of the antigen. An immunogen is also a foreign molecule which can elicit an immune response by triggering the host immune system. The key difference between the antigen and the immunogen is their ability and the inability to generate an immune response;an immunogen is necessarily an antigen, but an antigen may not necessarily be an immunogen. What is an Antigen? Antigens are small molecular recognition sites present in the cellular surface of many bacteria, fungi, viruses, dust particles and other cellular and noncellular particles. These small molecules referred to as antigens,and they can be recognized by the host immune system. Antigens are mainly composed of proteins, amino acids, lipids, glycolipids, glycoproteins or nucleic acid markers. These molecules possess the ability to bind to the antibodies (immunoglobulins produced by B cells) produced by the host as an immune response. Antigens are also capable of triggering the host immune system to initiate an immune mechanism. -
Immune Escape Mechanisms As a Guide for Cancer Immunotherapy Gregory L
Published OnlineFirst December 12, 2014; DOI: 10.1158/1078-0432.CCR-14-1860 Perspectives Clinical Cancer Research Immune Escape Mechanisms as a Guide for Cancer Immunotherapy Gregory L. Beatty and Whitney L. Gladney Abstract Immunotherapy has demonstrated impressive outcomes for exploited by cancer and present strategies for applying this some patients with cancer. However, selecting patients who are knowledge to improving the efficacy of cancer immunotherapy. most likely to respond to immunotherapy remains a clinical Clin Cancer Res; 21(4); 1–6. Ó2014 AACR. challenge. Here, we discuss immune escape mechanisms Introduction fore, promote tumor outgrowth. In this process termed "cancer immunoediting," cancer clones evolve to avoid immune-medi- The immune system is a critical regulator of tumor biology with ated elimination by leukocytes that have antitumor properties the capacity to support or inhibit tumor development, growth, (6). However, some tumors may also escape elimination by invasion, and metastasis. Strategies designed to harness the recruiting immunosuppressive leukocytes, which orchestrate a immune system are the focus of several recent promising thera- microenvironment that spoils the productivity of an antitumor peutic approaches for patients with cancer. For example, adoptive immune response (7). Thus, although the immune system can be T-cell therapy has produced impressive remissions in patients harnessed, in some cases, for its antitumor potential, clinically with advanced malignancies (1). In addition, therapeutic mono- relevant tumors appear to be marked by an immune system that clonal antibodies designed to disrupt inhibitory signals received actively selects for poorly immunogenic tumor clones and/or by T cells through the cytotoxic T-lymphocyte–associated antigen establishes a microenvironment that suppresses productive anti- 4 (CTLA-4; also known as CD152) and programmed cell death-1 tumor immunity (Fig. -
Vaccine Immunology Claire-Anne Siegrist
2 Vaccine Immunology Claire-Anne Siegrist To generate vaccine-mediated protection is a complex chal- non–antigen-specifc responses possibly leading to allergy, lenge. Currently available vaccines have largely been devel- autoimmunity, or even premature death—are being raised. oped empirically, with little or no understanding of how they Certain “off-targets effects” of vaccines have also been recog- activate the immune system. Their early protective effcacy is nized and call for studies to quantify their impact and identify primarily conferred by the induction of antigen-specifc anti- the mechanisms at play. The objective of this chapter is to bodies (Box 2.1). However, there is more to antibody- extract from the complex and rapidly evolving feld of immu- mediated protection than the peak of vaccine-induced nology the main concepts that are useful to better address antibody titers. The quality of such antibodies (e.g., their these important questions. avidity, specifcity, or neutralizing capacity) has been identi- fed as a determining factor in effcacy. Long-term protection HOW DO VACCINES MEDIATE PROTECTION? requires the persistence of vaccine antibodies above protective thresholds and/or the maintenance of immune memory cells Vaccines protect by inducing effector mechanisms (cells or capable of rapid and effective reactivation with subsequent molecules) capable of rapidly controlling replicating patho- microbial exposure. The determinants of immune memory gens or inactivating their toxic components. Vaccine-induced induction, as well as the relative contribution of persisting immune effectors (Table 2.1) are essentially antibodies— antibodies and of immune memory to protection against spe- produced by B lymphocytes—capable of binding specifcally cifc diseases, are essential parameters of long-term vaccine to a toxin or a pathogen.2 Other potential effectors are cyto- effcacy. -
Immunogen Design
applications and troubleshooting appendix chapter 21 Immunogen Design Antigens Used for Antibody Production • You can use synthetic peptides, recombinant proteins, immunogens, and others. We do not recommend the use of whole cells for anti- body production. • Arbitrary selection of the antigenic peptide or use of a recombinant fusion protein usually will result in a 65-70% success rate using standard methodologies. If the antigenic peptide is chosen using standard bioinformatic algorithms, you can increase your success rate to 75-80%. If this optimized peptide is then conjugated using Invitrogen’s proprietary approach, you can increase your success rate to about 85-90%. A recent collaborative study showed that approximately 450 polyclonal peptide antibodies out of 500 individual protein targets recognized their target by western blot analysis. Peptide Conjugation • Peptides are normally too short to be immunogenic. A carrier protein enhances immunogenicity. MAP and KLH are the two most popular conjugation methods. Other available conjugates are OVA (Ovalbumin), BSA (Bovine Serum Albumin), and THY (Thyroglobulin). • Conjugation is usually done through the sulfhydryl group of a Cys designed into the peptide. • For peptides < 6 kDa, conjugation will be required. • If studying invertebrate species, you should use carrier proteins such as ovalbumin and KLH (from sea snail). KLH has no homology to 21.2 vertebrate proteins. Invitrogen utilizes a proprietary multiple conjugation method where we conjugate peptides through both termini and through key internal sites. This methodology presents the peptides in alternate, multiple conformations, making them more antigenic and producing antibodies appendix with greater utility across assays. Our conjugation scheme provides a better matching of epitopes between the presented peptide and the way the peptides are presented in the native protein. -
I M M U N O L O G Y Core Notes
II MM MM UU NN OO LL OO GG YY CCOORREE NNOOTTEESS MEDICAL IMMUNOLOGY 544 FALL 2011 Dr. George A. Gutman SCHOOL OF MEDICINE UNIVERSITY OF CALIFORNIA, IRVINE (Copyright) 2011 Regents of the University of California TABLE OF CONTENTS CHAPTER 1 INTRODUCTION...................................................................................... 3 CHAPTER 2 ANTIGEN/ANTIBODY INTERACTIONS ..............................................9 CHAPTER 3 ANTIBODY STRUCTURE I..................................................................17 CHAPTER 4 ANTIBODY STRUCTURE II.................................................................23 CHAPTER 5 COMPLEMENT...................................................................................... 33 CHAPTER 6 ANTIBODY GENETICS, ISOTYPES, ALLOTYPES, IDIOTYPES.....45 CHAPTER 7 CELLULAR BASIS OF ANTIBODY DIVERSITY: CLONAL SELECTION..................................................................53 CHAPTER 8 GENETIC BASIS OF ANTIBODY DIVERSITY...................................61 CHAPTER 9 IMMUNOGLOBULIN BIOSYNTHESIS ...............................................69 CHAPTER 10 BLOOD GROUPS: ABO AND Rh .........................................................77 CHAPTER 11 CELL-MEDIATED IMMUNITY AND MHC ........................................83 CHAPTER 12 CELL INTERACTIONS IN CELL MEDIATED IMMUNITY ..............91 CHAPTER 13 T-CELL/B-CELL COOPERATION IN HUMORAL IMMUNITY......105 CHAPTER 14 CELL SURFACE MARKERS OF T-CELLS, B-CELLS AND MACROPHAGES...............................................................111 -
Mechanisms of Dysregulated Humoral and Cellular Immunity by SARS-Cov-2
pathogens Review Mechanisms of Dysregulated Humoral and Cellular Immunity by SARS-CoV-2 Nima Taefehshokr 1 , Sina Taefehshokr 2 and Bryan Heit 1,3,* 1 Department of Microbiology and Immunology, Center for Human Immunology, The University of Western Ontario, London, ON N0M 2N0, Canada; [email protected] 2 Immunology Research Center, Tabriz University of Medical Sciences, Tabriz 51368, Iran; [email protected] 3 Robarts Research Institute, London, ON N6A 5K8, Canada * Correspondence: [email protected]; Tel.: +1-519-661-3407 Received: 10 November 2020; Accepted: 6 December 2020; Published: 8 December 2020 Abstract: The current coronavirus disease 2019 (COVID-19) pandemic, a disease caused by severe acute respiratory syndrome corona virus 2 (SARS-CoV-2), was first identified in December 2019 in China, and has led to thousands of mortalities globally each day. While the innate immune response serves as the first line of defense, viral clearance requires activation of adaptive immunity, which employs B and T cells to provide sanitizing immunity. SARS-CoV-2 has a potent arsenal of mechanisms used to counter this adaptive immune response through processes, such as T cells depletion and T cell exhaustion. These phenomena are most often observed in severe SARS-CoV-2 patients, pointing towards a link between T cell function and disease severity. Moreover, neutralizing antibody titers and memory B cell responses may be short lived in many SARS-CoV-2 patients, potentially exposing these patients to re-infection. In this review, we discuss our current understanding of B and T cells immune responses and activity in SARS-CoV-2 pathogenesis. -
Characterisation and Functional Validation of ERG Phosphorylation in Normal Haematopoietic and Leukaemic Cells
Characterisation and Functional Validation of ERG Phosphorylation in Normal Haematopoietic and Leukaemic Cells Yizhou Huang A thesis in fulfilment of the requirements for the degree of Doctor of Philosophy Prince of Wales Clinical School Faculty of Medicine September 2015 Huang: ERG Phosphorylation and Leukaemogenesis Abstract Direct modulation of oncogenic transcriptional programs by targeting aberrantly regulated transcription factors is a promising area of research for cancer treatment. The ETS factor ERG (ETS-related gene) plays an important role in haematopoiesis and is also a potent oncoprotein with leukaemogenic activity in mouse models. In humans, high ERG expression is associated with poor patient outcomes in acute myeloid leukaemia (AML) and T-cell acute lymphoblastic leukaemia (T-ALL). However, gaps still exist in our knowledge regarding the post-translational regulation of ERG. Protein phosphorylation is known to regulate the transcriptional activity of many ETS factors. Yet, as a known phosphoprotein, how ERG activity responds to phosphorylating signalling pathways that are associated with the onset and progression of leukaemia is largely unknown. To unravel the post-translational regulation of ERG, I used liquid chromatography coupled tandem mass spectrometry to identify five phosphorylated serines (S) (S55, S88, S103, S222, S283) on endogenous ERG immunoprecipitated from MOLT-4 T-ALL cells with S283 phosphorylation (pS283) strongly enriched in leukaemic cells compared with healthy haematopoietic stem/progenitor cells (HSPCs). Generation of a customised anti-ERG pS283 antibody to probe upstream signalling pathways in primary ALL and AML xenografts identifies early T-cell precursor ALL cells with poor prognosis to exhibit particularly high levels of pS283, and there was a direct association between levels of pS283 and active extracellular signal-regulated kinase (ERK). -
And T-Cell Responses in Convalescent COVID-19 Patients 6-8 Months After the Infection
bioRxiv preprint doi: https://doi.org/10.1101/2020.11.06.371617; this version posted November 6, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Persistence of SARS-CoV-2 specific B- and T-cell responses in convalescent COVID-19 patients 6-8 months after the infection Natalia Sherina, Ph.D.1*, Antonio Piralla, M.D.2*, Likun Du, Ph.D.1*, Hui Wan, M.S.1*, Makiko Kumagai- Braesh, Ph.D.3, Juni Andréll, Ph.D.4, Sten Braesch-Andersen, Ph.D.5, Irene Cassaniti, Ph.D.2, Elena Percivalle, Ph.D.2, Antonella Sarasini, Ph.D 2, Federica Bergami, B.S.2, Raffaella Di Martino, B.S.2, Marta Colaneri, M.D.6, Marco Vecchia, M.D.6, Margherita Sambo, M.D.6, Valentina Zuccaro, M.D6, Raffaele Bruno, M.D.6, Tiberio Oggionni, M.D.7, Federica Meloni, M.D.8, Hassan Abolhassani, Ph.D.9, Federico Bertoglio, Ph.D.10, Maren Schubert, Ph.D.10, Miranda Byrne-Steele, Ph.D.11, Jian Han, Ph.D.11, Michael Hust, Ph.D.10, Yintong Xue, Ph.D.12, Lennart Hammarström, Ph.D.9, Fausto Baldanti, Ph.D.2, 13#, Harold Marcotte, Ph.D.9#, Qiang Pan-Hammarström, Ph.D.1# 1 Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden 2 Molecular Virology Unit, Microbiology and Virology Department, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy 3 Division of Transplantation Surgery, CLINTEC, Karolinska Institutet at Karolinska University Hospital, Stockholm, Sweden 4 Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm -
The Nature of the Antigen Determine the Type of Immune Response
LECTURE: 18 Title ANTIGENS AND IMMUNOGENS LEARNING OBJECTIVES: The student should be able to: • Define the antigenicity & immunogenecity. • Define the immunogen, antigen, hapten, epitope (antigenic determinant), and adjuvant. • Identify the factors that affect the antigenicity (characters of the substances which make it antigenic), such as; foreignness, chemical complexity, molecular size, dose of the antigen (high & low dose), and adjuvants (Freund’s adjuvants & Aluminum hydroxide). • Define the relation between the epitope & the antibody specificity. Also the valence of an antigen. • Explain the cross reactivity and define the antibody affinity and the avidity. • Describe the types of antigens for example; bacterial, viral, and isoantigens such as; blood grouping, MHC antigens. • Explain the organization & structure of MHC Genes & Products (MHC class II, III molecules, & I). • Identify the role of the MHC in controlling the T-Cell response. + • Explain the activation of CD8 cytotoxic T cells, & what determines that whether an antigen elicits a class II or class I restricted response. LECTURE REFRENCE: 1. TEXTBOOK: NATIONAL MEDICAL SERIES FOR INDEPENDENT STUDY. RICHARD M. HYDE. 3RD EDITION. Chapter 2. pg 23-30. 2. TEXTBOOK: JONATHAN M. AUSTYN AND KATHRYN J. WOOD Principles of Cellular and Molecular Immunology . Chapter 2. pg 63-84. 3. TEXTBOOK: ABUL K. ABBAS. ANDREW H. LICHTMAN. CELLULAR AND MOLECULAR IMMUNOLOGY. 5TH EDITION. pg 58, 216, 489. 4. TEXTBOOK: NATIONAL MEDICAL SERIES FOR INDEPENDENT STUDY. RICHARD M. HYDE. Chapter 2. pg 23-30. 1 ANTIGENS AND IMMUNOGENS I. DEFINITIONS A. Antigens. The immune response is characterized by the production of either proteins, called antibodies, or specifically reactive lymphocytes, called T cells, when an animal encounters a foreign macromolecule or cell. -
Data Sheet 371
Rudolf-Wissell-Str. 28a Background 37079 Göttingen, Germany Phone: +49 551-50556-0 CD 63 is a glycoprotein with four transmembrane domains. It is expressed in several cell types and Fax: +49 551-50556-384 localizes to late endosomes, lysosomes and secretory vesicles. In basophile granulocytes it is E-mail: [email protected] transiently exposed on the cell surface after activation. CD 63 expression is also associated with early Web: www.sysy.com stages of melanoma tumor progression. CD63 Selected General References Cat.No. 371 011; Monoclonal mouse antibody, 100 µg purified IgG (lyophilized) Pancreatic Premalignant Lesions Secrete Tissue Inhibitor of Metalloproteinases-1, Which Activates Hepatic Stellate Cells Via CD63 Signaling to Create a Premetastatic Niche in the Liver. Grünwald B, Harant V, Schaten S, Frühschütz M, Spallek R, Höchst B, Stutzer K, Berchtold S, Erkan M, Prokopchuk O, Data Sheet Martignoni M, et al. Gastroenterology (2016) 1515: 1011-1024.e7. Reconstitution/ 100 µg purified IgG, lyophilized. Azide was added before lyophilization. For CD63 tetraspanin is a negative driver of epithelial-to-mesenchymal transition in human melanoma cells. Storage reconstitution add 100 µl H O to get a 1mg/ml solution in PBS. Then aliquot and Lupia A, Peppicelli S, Witort E, Bianchini F, Carloni V, Pimpinelli N, Urso C, Borgognoni L, Capaccioli S, Calorini L, Lulli M, et al. 2 The Journal of investigative dermatology (2014) 13412: 2947-2956. store at -20°C to -80°C until use. For detailed information, see back of the data sheet. The tetraspanin CD63 is required for efficient IgE-mediated mast cell degranulation and anaphylaxis.