Practical Applications for Systematics and Taxonomy in North American Freshwater Gastropod Conservation
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Report to Office of Water Science, Department of Science, Information Technology and Innovation, Brisbane
Lake Eyre Basin Springs Assessment Project Hydrogeology, cultural history and biological values of springs in the Barcaldine, Springvale and Flinders River supergroups, Galilee Basin and Tertiary springs of western Queensland 2016 Department of Science, Information Technology and Innovation Prepared by R.J. Fensham, J.L. Silcock, B. Laffineur, H.J. MacDermott Queensland Herbarium Science Delivery Division Department of Science, Information Technology and Innovation PO Box 5078 Brisbane QLD 4001 © The Commonwealth of Australia 2016 The Queensland Government supports and encourages the dissemination and exchange of its information. The copyright in this publication is licensed under a Creative Commons Attribution 3.0 Australia (CC BY) licence Under this licence you are free, without having to seek permission from DSITI or the Commonwealth, to use this publication in accordance with the licence terms. You must keep intact the copyright notice and attribute the source of the publication. For more information on this licence visit http://creativecommons.org/licenses/by/3.0/au/deed.en Disclaimer This document has been prepared with all due diligence and care, based on the best available information at the time of publication. The department holds no responsibility for any errors or omissions within this document. Any decisions made by other parties based on this document are solely the responsibility of those parties. Information contained in this document is from a number of sources and, as such, does not necessarily represent government or departmental policy. If you need to access this document in a language other than English, please call the Translating and Interpreting Service (TIS National) on 131 450 and ask them to telephone Library Services on +61 7 3170 5725 Citation Fensham, R.J., Silcock, J.L., Laffineur, B., MacDermott, H.J. -
A New Approach to an Old Conundrumdna Barcoding Sheds
Molecular Ecology Resources (2010) doi: 10.1111/j.1755-0998.2010.02937.x DNA BARCODING A new approach to an old conundrum—DNA barcoding sheds new light on phenotypic plasticity and morphological stasis in microsnails (Gastropoda, Pulmonata, Carychiidae) ALEXANDER M. WEIGAND,* ADRIENNE JOCHUM,* MARKUS PFENNINGER,† DIRK STEINKE‡ and ANNETTE KLUSSMANN-KOLB*,† *Institute for Ecology, Evolution and Diversity, Siesmayerstrasse 70, Goethe-University, 60323 Frankfurt am Main, Germany, †Research Centre Biodiversity and Climate, Siesmayerstrasse 70, 60323 Frankfurt am Main, Germany, ‡Biodiversity Institute of Ontario, University of Guelph, 50 Stone Road West, Guelph, ON N1G 2V7, Canada Abstract The identification of microsnail taxa based on morphological characters is often a time-consuming and inconclusive process. Aspects such as morphological stasis and phenotypic plasticity further complicate their taxonomic designation. In this study, we demonstrate that the application of DNA barcoding can alleviate these problems within the Carychiidae (Gastro- poda, Pulmonata). These microsnails are a taxon of the pulmonate lineage and most likely migrated onto land indepen- dently of the Stylommatophora clade. Their taxonomical classification is currently based on conchological and anatomical characters only. Despite much confusion about historic species assignments, the Carychiidae can be unambiguously subdi- vided into two taxa: (i) Zospeum species, which are restricted to karst caves, and (ii) Carychium species, which occur in a broad range of environmental conditions. The implementation of discrete molecular data (COI marker) enabled us to cor- rectly designate 90% of the carychiid microsnails. The remaining cases were probably cryptic Zospeum and Carychium taxa and incipient species, which require further investigation into their species status. Because conventional reliance upon mostly continuous (i.e. -
Title the Lower Triassic Kurotaki Fauna in Shikoku and Its Allied
The Lower Triassic Kurotaki Fauna in Shikoku and its allied Title Faunas in Japan Author(s) Nakazawa, Keiji Memoirs of the Faculty of Science, Kyoto University. Series of Citation geology and mineralogy (1971), 38(1): 103-133 Issue Date 1971-08-15 URL http://hdl.handle.net/2433/186575 Right Type Departmental Bulletin Paper Textversion publisher Kyoto University MEMOrRs oF THE FAcuLTy oF SalENcE, KyoTo UNTvERsrry, SERIEs oF GEoL, & MrNERAL. Vol. XXXVIII, No. I, pp. 103-133, pls. 23-25, August 15, 1971 The Lower,Triassic Kurotaki Fauna in Shikoku and its allied Faunas in Japan By Kelji NAKAzAwA (Received April 8, 1971) Abstract This article treats with the description mainly of the Lower Triassic fosslls from the Kurotaki limestone in 'Shikoku, southwestJapan, which have long been left undescribed.' Ofthe Kurotaki fauna, ten species of bivalves, two species of gastropods, and one sepcies each of amrnonite and brachiopod are discriminated. The Kurotaki limestone is considered, frorn these fossils, to be Mid-Skythian, probably early Owenitan in age. The presence of "Streblochendrki" matsushitai n. sp. and Pticatifera? sp. indicates a survival of the Paleozoic elements in the eraly Triassic. Re- examining other lower Triassic faunas, taxonomic emendation has also been made. Lastly the middle Skythian transgression in Japan has been suggested by reviewing the lower Triassic Systeni in Japan. Introduction and Acknowledgements It was as early as in 1883, when the German geologist E. NAuMANN, one of the pioneers in the study of the geology ofJapan, made a geological reconnaissance in Shikoku and noticed the occurrence of the Triassic fossils at Izumigatani about 6 km north of Ryoseki, Tosa Province (Kochi Prefecture) (NAuMANN and NEuMAyR, 1890, p. -
Storia Di Una Conchiglia
Notiziario S.I.M. Supplemento al Bollettino Malacologico Sommario Anno 24 - n. 1-4 (gennaio-aprile 2006) Vita sociale 21 Paolo Giulio Albano, Ritrovamenti presso la spiaggia di Palo Laziale (Roma) Necrologi: 23 Paolo Paolini, Segnalazioni dal Mare Toscano 3 Ronald Janssen, Ricordo di Adolph Zilch 25 Rino Stanic & Diego Viola, Segnalazione 4 Jacobus J. van Aartsen, Ricordo di Ferdinando della presenza di Pholadidea loscombiana Godall Carrozza in Turton, 1819 lungo le coste della Dalmazia, Croazia, Adriatico orientale 6 Verbale della riunione del Consiglio Direttivo (Prato, 5 Novembre 2005) 27 Agatino Reitano, Segnalazione di Myoforceps aristata (Dillwyn, 1817) in due stazioni della Sicilia 7 Giovanni Buzzurro & Gianbattista Nardi, orientale (Mar Ionio) Intervista ad Enrico Pezzoli 10 Paolo G. Albano, Rinnovamento del Sito della SIM: lettera ai Soci 28 Segnalazioni bibliografiche 11 Elenco delle pubblicazioni S.I.M. disponibili 29 Recensioni Curiosità 31 Eventi 12 Massimo Leone, Storia di una conchiglia 33 Mostre e Borse Contributi 34 Pubblicazioni ricevute 17 Antonino Di Bella, Osservazioni sull’habitat del Chiton phaseolinus (Monterosato, 1879). 19 Pasquale Micali, Morena Tisselli & LUIGI Varie GIUNCHI, Segnalazione di Tellimya tenella (Lovén, 1846) per le isole Tremiti (Adriatico meridionale) 42 Quote Sociali 2006 in copertina: Solemya togata (Poli, 1795) bennata al largo di Marina di Ravenna alla profondità di 20 m - Foto Morena Tisselli ’ Vita sociale Dr. Adolf Zilch† Necrologio Dear colleagues, Cari colleghi, with sorrow and great concern I have to announce the death Con dolore e turbamento devo annunciare la morte del of Dr. Adolf Zilch. After a long and fulfilled life A. Zilch pas- Dr. Adolf Zilch. -
Beddomeia Trochiformis Ponder & Clark, 1993
Beddomeia trochiformis Ponder & Clark, 1993 Diagnostic features Species in the B. tasmanica group have small shells (length 1.2-2.8 mm) with a depressed spire and open umbilicus. The penis is simple. Beddomeia trochiformis (adult size 2.2-2.7 mm) Distribution of Beddomeia trochiformis. This species differs from other members of the group in possessing a radula with a moderately indented dorsal edge of the central teeth, the latter also with teeth steeper outer edges (40°, compared with 45°) and ratio of lateral teeth cutting edge to shaft 0.5 (~0.43 in other taxa); mantle cavity with fewer ctenidial filaments (15-19); female genital system with initial U-bend of coiled oviduct orientated obliquely backwards (not dorso-ventral). Classification Beddomeia trochiformis Ponder & Clark, 1993 Class Gastropoda I nfraclass Caenogastropoda Order Littorinida Suborder Rissoidina Superfamily Truncatelloidea Family Tateidae Genus Beddomeia Petterd, 1889 Original name: Beddomeia trochiformis Ponder & Clark, 1993 in Ponder, W.F., Clark, G.A., Miller, A.C. & Toluzzi, A. (1993). On a major radiation of freshwater snails in Tasmania and eastern Victoria: a preliminary overview of the Beddomeia group (Mollusca: Gastropoda: Hydrobiidae). I nvertebrate Taxonomy 7: 501-750. Type locality: Bowry Creek, tributary of Savage River, side road off Corinna Road, Tasmania. Biology and ecology Under stones in streams. The white egg capsules are laid on the undersides of stones and are like those of other species of Beddomeia - dome-shaped, with broad attachment base, covered with minute, mainly white sand grains and other fragments and containing a single egg. Development direct. Distribution This species and B. -
Molecular Phylogeny and Biogeography of Spring-Associated Hydrobiid Snails of the Great Artesian Basin, Australia
Molecular Phylogenetics and Evolution 34 (2005) 545–556 www.elsevier.com/locate/ympev Molecular phylogeny and biogeography of spring-associated hydrobiid snails of the Great Artesian Basin, Australia Kathryn E. Pereza,¤, Winston F. Ponderb, Donald J. Colganb, Stephanie A. Clarkc,1, Charles Lydearda a Department of Biological Sciences, Biodiversity and Systematics, University of Alabama, Box 870345, Tuscaloosa, AL 35487-0345, USA b Australian Museum, Sydney, NSW 2010, Australia c Centre for Biostructural and Biomolecular Research, University of Western Sydney, Hawkesbury Campus, Locked Bag 1797 Penrith South DC, NSW 1797, Australia Received 6 July 2004; revised 15 November 2004 Available online 6 January 2005 Abstract The Great Artesian Basin (GAB) of Australia underlies some of the driest parts of South Australia and Queensland and feeds numerous freshwater springs. Prominent and endangered components of the GAB spring community are snails of the family Hydro- biidae. This paper examines the evolutionary relationships of the entire hydrobiid fauna associated with the GAB, and includes appropriate non-GAB species to place the GAB fauna in a broader phylogenetic context. The Queensland genus Jardinella is a focus of this paper, providing a Wne scale examination of relationships between spring supergroups in the northeastern regions of the GAB. Maximum parsimony and Bayesian analyses performed on 16S, CO1, and combined sequence data from 40 hydrobiid taxa found four major clades of Australian taxa. The analysis revealed that at least three separate colonization events of the GAB spring fauna have occurred. Two of these are represented by considerable radiations, (1) Jardinella to the north and east and (2) Caldicochlea, Fonscochlea, and possibly Trochidrobia in South Australia. -
Biological Monitoring of Surface Waters in New York State, 2019
NYSDEC SOP #208-19 Title: Stream Biomonitoring Rev: 1.2 Date: 03/29/19 Page 1 of 188 New York State Department of Environmental Conservation Division of Water Standard Operating Procedure: Biological Monitoring of Surface Waters in New York State March 2019 Note: Division of Water (DOW) SOP revisions from year 2016 forward will only capture the current year parties involved with drafting/revising/approving the SOP on the cover page. The dated signatures of those parties will be captured here as well. The historical log of all SOP updates and revisions (past & present) will immediately follow the cover page. NYSDEC SOP 208-19 Stream Biomonitoring Rev. 1.2 Date: 03/29/2019 Page 3 of 188 SOP #208 Update Log 1 Prepared/ Revision Revised by Approved by Number Date Summary of Changes DOW Staff Rose Ann Garry 7/25/2007 Alexander J. Smith Rose Ann Garry 11/25/2009 Alexander J. Smith Jason Fagel 1.0 3/29/2012 Alexander J. Smith Jason Fagel 2.0 4/18/2014 • Definition of a reference site clarified (Sect. 8.2.3) • WAVE results added as a factor Alexander J. Smith Jason Fagel 3.0 4/1/2016 in site selection (Sect. 8.2.2 & 8.2.6) • HMA details added (Sect. 8.10) • Nonsubstantive changes 2 • Disinfection procedures (Sect. 8) • Headwater (Sect. 9.4.1 & 10.2.7) assessment methods added • Benthic multiplate method added (Sect, 9.4.3) Brian Duffy Rose Ann Garry 1.0 5/01/2018 • Lake (Sect. 9.4.5 & Sect. 10.) assessment methods added • Detail on biological impairment sampling (Sect. -
Draft Carpathian Red List of Forest Habitats
CARPATHIAN RED LIST OF FOREST HABITATS AND SPECIES CARPATHIAN LIST OF INVASIVE ALIEN SPECIES (DRAFT) PUBLISHED BY THE STATE NATURE CONSERVANCY OF THE SLOVAK REPUBLIC 2014 zzbornik_cervenebornik_cervene zzoznamy.inddoznamy.indd 1 227.8.20147.8.2014 222:36:052:36:05 © Štátna ochrana prírody Slovenskej republiky, 2014 Editor: Ján Kadlečík Available from: Štátna ochrana prírody SR Tajovského 28B 974 01 Banská Bystrica Slovakia ISBN 978-80-89310-81-4 Program švajčiarsko-slovenskej spolupráce Swiss-Slovak Cooperation Programme Slovenská republika This publication was elaborated within BioREGIO Carpathians project supported by South East Europe Programme and was fi nanced by a Swiss-Slovak project supported by the Swiss Contribution to the enlarged European Union and Carpathian Wetlands Initiative. zzbornik_cervenebornik_cervene zzoznamy.inddoznamy.indd 2 115.9.20145.9.2014 223:10:123:10:12 Table of contents Draft Red Lists of Threatened Carpathian Habitats and Species and Carpathian List of Invasive Alien Species . 5 Draft Carpathian Red List of Forest Habitats . 20 Red List of Vascular Plants of the Carpathians . 44 Draft Carpathian Red List of Molluscs (Mollusca) . 106 Red List of Spiders (Araneae) of the Carpathian Mts. 118 Draft Red List of Dragonfl ies (Odonata) of the Carpathians . 172 Red List of Grasshoppers, Bush-crickets and Crickets (Orthoptera) of the Carpathian Mountains . 186 Draft Red List of Butterfl ies (Lepidoptera: Papilionoidea) of the Carpathian Mts. 200 Draft Carpathian Red List of Fish and Lamprey Species . 203 Draft Carpathian Red List of Threatened Amphibians (Lissamphibia) . 209 Draft Carpathian Red List of Threatened Reptiles (Reptilia) . 214 Draft Carpathian Red List of Birds (Aves). 217 Draft Carpathian Red List of Threatened Mammals (Mammalia) . -
Northwest Standard Taxonomic Effort
Northwest Standard Taxonomic Effort Amy Puls (PNAMP/USGS), Bob Wisseman (ABA), John Pfeiffer (EcoAnalysts), Sean Sullivan (Rithron), Sue Salter (Cordillera Consulting) Northwest Biological Assessment Workgroup Meeting Astoria, OR November 5, 2013 PNAMP provides a forum to enhance the capacity of multiple entities to collaborate to produce an effective and comprehensive network of aquatic monitoring programs in the Pacific Northwest based on sound science designed to inform public policy and resource management decisions. ACOE NPCC BLM OWEB BPA 20 Signatory PSMFC Partners form the CDFW USBR steering committee Colville Tribes USFS CRITFC 4 full-time staff USGS EPA Everyone is welcome WDFW IDFG to participate WA ECY NOAA WA GSRO NWIFC WA RCO www.pnamp.org Northwest Standard Taxonomic Effort (NWSTE) To improve macroinvertebrate data sharing across WHY the Pacific Northwest Standardized taxonomic nomenclature and HOW resolution to use when identifying macroinvertebrates 2012 NBAW The monitoring agency perspective (Jo Wilhelm, King Co. WA) The taxonomic labs perspective (Sean Sullivan, Rhithron) Lessons learned from SAFIT (Joe Slusark, Brady Richards) Integration with national efforts (Scott Grotheer, National WQ Lab/USGS) Included/excluded organisms • STE provides guidance on what taxa to include or exclude from benthic data sets. • Terrestrial invertebrates, water surface taxa, eggs, empty shells or cases are excluded entirely, or can be incorporated as incidental records not for metric calculations. 10 PNAMP STE Levels STE1: The coarsest taxonomic level – intended for rapid assessments and citizen or school group monitoring projects. STE2: The lowest practical (and cost effective) level - this is the target level for harmonizing benthic biomonitoring data sets across the region for comparison. -
A Review of Natural Values Within the 2013 Extension to the Tasmanian Wilderness World Heritage Area
A review of natural values within the 2013 extension to the Tasmanian Wilderness World Heritage Area Nature Conservation Report 2017/6 Department of Primary Industries, Parks, Water and Environment Hobart A review of natural values within the 2013 extension to the Tasmanian Wilderness World Heritage Area Jayne Balmer, Jason Bradbury, Karen Richards, Tim Rudman, Micah Visoiu, Shannon Troy and Naomi Lawrence. Department of Primary Industries, Parks, Water and Environment Nature Conservation Report 2017/6, September 2017 This report was prepared under the direction of the Department of Primary Industries, Parks, Water and Environment (World Heritage Program). Australian Government funds were contributed to the project through the World Heritage Area program. The views and opinions expressed in this report are those of the authors and do not necessarily reflect those of the Tasmanian or Australian Governments. ISSN 1441-0680 Copyright 2017 Crown in right of State of Tasmania Apart from fair dealing for the purposes of private study, research, criticism or review, as permitted under the Copyright act, no part may be reproduced by any means without permission from the Department of Primary Industries, Parks, Water and Environment. Published by Natural Values Conservation Branch Department of Primary Industries, Parks, Water and Environment GPO Box 44 Hobart, Tasmania, 7001 Front Cover Photograph of Eucalyptus regnans tall forest in the Styx Valley: Rob Blakers Cite as: Balmer, J., Bradbury, J., Richards, K., Rudman, T., Visoiu, M., Troy, S. and Lawrence, N. 2017. A review of natural values within the 2013 extension to the Tasmanian Wilderness World Heritage Area. Nature Conservation Report 2017/6, Department of Primary Industries, Parks, Water and Environment, Hobart. -
Department of the Interior Fish and Wildlife Service
Tuesday, August 9, 2005 Part III Department of the Interior Fish and Wildlife Service 50 CFR Part 17 Endangered and Threatened Wildlife and Plants; Listing Roswell springsnail, Koster’s springsnail, Noel’s amphipod, and Pecos assiminea as Endangered With Critical Habitat; Final Rule VerDate jul<14>2003 18:26 Aug 08, 2005 Jkt 205001 PO 00000 Frm 00001 Fmt 4717 Sfmt 4717 E:\FR\FM\09AUR2.SGM 09AUR2 46304 Federal Register / Vol. 70, No. 152 / Tuesday, August 9, 2005 / Rules and Regulations DEPARTMENT OF THE INTERIOR SUPPLEMENTARY INFORMATION: in coastal brackish waters or along tropical and temperate seacoasts Background Fish and Wildlife Service worldwide (Taylor 1987). Inland species It is our intent to discuss only those of the genus Assiminea are known from 50 CFR Part 17 topics directly relevant to this final around the world, and in North America listing determination. For more RIN 1018–AI15 they occur in California (Death Valley information on the four invertebrates, National Monument), Utah, New Endangered and Threatened Wildlife refer to the February 12, 2002, proposed Mexico, Texas (Pecos and Reeves and Plants; Listing Roswell rule (67 FR 6459). However, some of Counties), and Mexico (Bolso´n de springsnail, Koster’s springsnail, this information is discussed in our Cuatro Cı´enegas). Noel’s amphipod, and Pecos analyses below, such as the summary of The Roswell springsnail and Koster’s assiminea as Endangered With Critical factors affecting the species. springsnail are aquatic species. These Habitat Springsnails snails have lifespans of 9 to 15 months and reproduce several times during the AGENCY: Fish and Wildlife Service, The Permian Basin of the spring through fall breeding season Interior. -
Nominal Taxa of Freshwater Mollusca from Southeast Asia Described by Dr
Ecologica Montenegrina 41: 73-83 (2021) This journal is available online at: www.biotaxa.org/em http://dx.doi.org/10.37828/em.2021.41.11 https://zoobank.org/urn:lsid:zoobank.org:pub:2ED2B90D-4BF2-4384-ABE2-630F76A1AC54 Nominal taxa of freshwater Mollusca from Southeast Asia described by Dr. Nguyen N. Thach: A brief overview with new synonyms and fixation of a publication date IVAN N. BOLOTOV1,2, EKATERINA S. KONOPLEVA1,2,*, ILYA V. VIKHREV1,2, MIKHAIL Y. GOFAROV1,2, MANUEL LOPES-LIMA3,4,5, ARTHUR E. BOGAN6, ZAU LUNN7, NYEIN CHAN7, THAN WIN8, OLGA V. AKSENOVA1,2, ALENA A. TOMILOVA1, KITTI TANMUANGPAK9, SAKBOWORN TUMPEESUWAN10 & ALEXANDER V. KONDAKOV1,2 1N. Laverov Federal Center for Integrated Arctic Research of the Ural Branch of the Russian Academy of Sciences, Northern Dvina Emb. 23, 163000 Arkhangelsk, Russia. 2Northern Arctic Federal University, Northern Dvina Emb. 17, 163002 Arkhangelsk, Russia. 3CIBIO/InBIO – Research Center in Biodiversity and Genetic Resources, University of Porto, Campus Agrário de Vairão, Rua Padre Armando Quintas 7, 4485-661 Vairão, Portugal. 4CIIMAR/CIMAR – Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, S/N, 4450-208 Matosinhos, Portugal. 5SSC/IUCN – Mollusc Specialist Group, Species Survival Commission, International Union for Conservation of Nature, c/o The David Attenborough Building, Pembroke Street, CB2 3QZ Cambridge, United Kingdom. 6North Carolina Museum of Natural Sciences, 11 West Jones St., Raleigh, NC 27601, United States of America 7Fauna & Flora International – Myanmar Programme, Yangon, Myanmar. 8 Department of Zoology, Dawei University, Dawei, Tanintharyi Region, Myanmar.