Some Biosystematic Considerations of the Genus Bothriochloa
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Evidence for Natural Selection Acting on Genes Affecting Lignin and Cellulose Biosynthesis in Eucalyptus Globulus
Evidence for Natural Selection acting on Genes Affecting Lignin and Cellulose Biosynthesis in Eucalyptus globulus Sara Hadjigol (BSc) Submitted in fulfilment of the requirements for the Degree of Master of Philosophy School of Plant Science, University of Tasmania July 2011 i Declaration This thesis contains no material which has been accepted for a degree or diploma by the University or any other institution, except by way of background information and duly acknowledged in the thesis. To the best of my knowledge and belief, this thesis contains no material previously published or written by another person, except where due acknowledgement is made in the text of the thesis, nor does the thesis contain any material that infringes copyright. This thesis may be made available for loan and limited copying in accordance with the Copyright Act 1968. Sara Hadjigol July 2011 ii ABSTRACT Eucalyptus globulus (Myrtaceae) is a forest tree species that is native to South-eastern Australia, including the island of Tasmania. It is the main eucalypt species grown in pulpwood plantations in temperate regions of the world and is being domesticated in many breeding programs. The improvement of its wood properties is a major objective of these breeding programs. As many wood properties are expensive to assess, there is increasing interest in the application of molecular breeding approaches targeting candidate genes, particularly those in the lignin and cellulose biosynthesis pathways. To assist in the identification of genes and allelic variants likely to have important phenotypic effects, this study aimed to determine whether there was a signature in the genome indicating that natural selection had caused differentiation amongst the races of E. -
Lntrogression and Its Consequences in Plants Loren H
Botany Publication and Papers Botany 1993 lntrogression and Its Consequences in Plants Loren H. Rieseberg Rancho Santa Ana Botanic Garden Jonathan F. Wendel Iowa State University, [email protected] Follow this and additional works at: http://lib.dr.iastate.edu/bot_pubs Part of the Botany Commons, Evolution Commons, and the Plant Breeding and Genetics Commons Recommended Citation Rieseberg, Loren H. and Wendel, Jonathan F., "lntrogression and Its Consequences in Plants" (1993). Botany Publication and Papers. 8. http://lib.dr.iastate.edu/bot_pubs/8 This Book Chapter is brought to you for free and open access by the Botany at Iowa State University Digital Repository. It has been accepted for inclusion in Botany Publication and Papers by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. lntrogression and Its Consequences in Plants Abstract The or le of introgression in plant evolution has been the subject of considerable discussion since the publication of Anderson's influential monograph, Introgressive Hybridization (Anderson, 1949). Anderson promoted the view, since widely held by botanists, that interspecific transfer of genes is a potent evolutionary force. He suggested that "the raw material for evolution brought about by introgression must greatly exceed the new genes produced directly by mutation" ( 1949, p. 102) and reasoned, as have many subsequent authors, that the resulting increases in genetic diversity and number of genetic combinations promote the development or acquisition of novel adaptations (Anderson, 1949, 1953; Stebbins, 1959; Rattenbury, 1962; Lewontin and Birch, 1966; Raven, 1976; Grant, 1981 ). In contrast to this "adaptationist" perspective, others have accorded little ve olutionary significance to introgression, suggesting instead that it should be considered a primarily local phenomenon with only transient effects, a kind of"evolutionary noise" (Barber and Jackson, 1957; Randolph et al., 1967; Wagner, 1969, 1970; Hardin, 1975). -
Gene Genealogies and Population Variation in Plants
Colloquium Gene genealogies and population variation in plants Barbara A. Schaal* and Kenneth M. Olsen Department of Biology, Washington University, St. Louis, MO 63130 Early in the development of plant evolutionary biology, genetic selection. Morphology, karyotypes, and fitness components are drift, fluctuations in population size, and isolation were identified central traits for understanding evolution and adaptation, but as critical processes that affect the course of evolution in plant they limit which evolutionary processes can be studied. In his species. Attempts to assess these processes in natural populations book, Stebbins discusses such events as fluctuations in popula- became possible only with the development of neutral genetic tion size, random fixation (genetic drift), and isolation as all markers in the 1960s. More recently, the application of historically affecting the process of evolution (see passage quoted above; ref. ordered neutral molecular variation (within the conceptual frame- 1). However, the study of these mechanisms requires markers work of coalescent theory) has allowed a reevaluation of these that are not under selection. microevolutionary processes. Gene genealogies trace the evolu- In the years after the publication of Stebbins’ book, among tionary relationships among haplotypes (alleles) with populations. the first major technical advances in evolutionary biology were Processes such as selection, fluctuation in population size, and the development of protein electrophoresis and the identifi- population substructuring affect the geographical and genealog- cation of allozyme variation in natural populations. Many ical relationships among these alleles. Therefore, examination of allozymes are selectively neutral, and thus, for the first time, these genealogical data can provide insights into the evolutionary evolutionary biologists could attempt to assess the amount of history of a species. -
TAXONOMIC STUDIES and GENERIC DELIMITATION in the GRASS SUBTRIBE Sorghinae
TAXONOMIC STUDIES AND GENERIC DELIMITATION IN THE GRASS SUBTRIBE Sorghinae. Moffat Pinkie Setshogo A thesis submitted in fulfilment of the requirements for the degree of Doctor of Philosophy University of Edinburgh March 1997 Dedicated to the memory of my father, Tonkana, and to my mother, Kerileng. Acknowledgements. This work was carried out under the supervision of Dr. P.M. Smith. I wish to express my sincere gratitude to him for the advice and assistance throughout the progress of the study. I also want to thank Dr. C.E. Jeffree who has been very supportive and proof read a substantial portion of the thesis. I am indebted to the University of Botswana for the financial support and for offering me a study leave to enable me to carry out this study. The work was carried out at the Department of Botany, University of Edinburgh, as well as at the Royal Botanic Garden, Edinburgh. I would like to extend my thanks to the authorities of both institutions, and their staff, who offered help in many ways. My collection of living material was cared for by Messrs Billy Adams and Bob Astles. I wish to thank them for their help. My thanks also go to members of the photographic unit of ICMB, particularly John Anthony, Dave Haswell and Frank Johnston, for their help. Mr. John Findlay (Botany Department) gave me guidance with my SEM work, for which I am grateful. I am indebted to the Directors of various herbaria who loaned me specimens. Helen Hoy and Marisa Main were in charge of the Edinburgh side of these loans. -
Dichanthium Aristatum Scientific Name Dichanthium Aristatum (Poir.) C.E
Tropical Forages Dichanthium aristatum Scientific name Dichanthium aristatum (Poir.) C.E. Hubb. Synonyms Basionym: Andropogon aristatus Poir.; Andropogon nodosus auct. Tufted, shortly rhizomatous perennial Creeping naturalized ecotype, Family/tribe with slender stems and varying degrees Fitzroyvale, Central Qld, Australia of stolon development (CPI 84136) Family: Poaceae (alt. Gramineae) subfamily: Panicoideae tribe: Andropogoneae subtribe: Anthristiriinae. Morphological description Tufted, shortly rhizomatous perennial with slender stems and varying degrees of stolon development. Young plants prostrate to semi-erect with foliage to 80 cm, becoming erect at maturity, culms geniculate to 1‒1.8 m at maturity; nodes glabrous or short woolly. Leaf blades linear, 3‒25 cm long, 2‒8 (‒10) mm wide, glabrous or Dispersal units (seed) thinly pilose on both surfaces; ligule c. 0.6 mm, minutely Inflorescence a sub-digitate panicle, comprising mostly 2 - 6 racemes; fimbriate. Primary peduncle softly pilose for 1.5‒2.5 cm dense pubescence on peduncle immediately below the inflorescence. Inflorescence a immediately below lowest raceme (distinguishing feature) sub-digitate panicle, comprising (1–) 2‒6 (‒10) flexuous racemes 2‒5 (‒8) cm long; secondary peduncles pubescent; racemes hairy, awns on each spikelet pair from (12‒) 16‒30 mm long. Caryopsis ellipsoid, longitudinally grooved, hilum long-linear; c. 1.8 mm long. 500,000-1 million seed units (sessile spikelet + pedicellate spikelet)/kg. Similar species Seed production stand of cv. Floren, north Queensland, Australia D. aristatum: peduncle nodes glabrous or shortly pubescent; short, dense pubescence on peduncle immediately below lowest raceme. 'Floren' pasture on black clay soil, southern Queensland, Australia D. annulatum: peduncle nodes with annulus of long hairs; peduncle internodes glabrous. -
Allopolyploidy, Diversification, and the Miocene Grassland Expansion
Allopolyploidy, diversification, and the Miocene grassland expansion Matt C. Estepa,b,1, Michael R. McKaina,c,1, Dilys Vela Diaza,d,1, Jinshun Zhonga,e,1, John G. Hodgea,c, Trevor R. Hodkinsonf, Daniel J. Laytona,c, Simon T. Malcomberg, Rémy Pasqueth,i,j, and Elizabeth A. Kellogga,c,2 aDepartment of Biology, University of Missouri–St. Louis, St. Louis, MO 63121; bDepartment of Biology, Appalachian State University, Boone, NC 28608; cDonald Danforth Plant Science Center, St. Louis, MO 63132; dDepartment of Biology, Washington University, St. Louis, MO 63130; eDepartment of Plant Biology, University of Vermont, Burlington, VT 05405; fDepartment of Botany, Trinity College Dublin, Dublin 2, Ireland; gDivision of Environmental Biology, National Science Foundation, Arlington, VA 22230; hInternational Centre of Insect Physiology and Ecology (icipe), Nairobi, Kenya; iUnité de Recherche Institut de Recherche pour le Développement 072, Laboratoire Évolution, Génomes et Spéciation, 91198 Gif-sur-Yvette, France; and jUniversité Paris-Sud 11, 91400 Orsay, France Edited* by John F. Doebley, University of Wisconsin–Madison, Madison, WI, and approved July 29, 2014 (received for review March 4, 2014) The role of polyploidy, particularly allopolyploidy, in plant di- inference of polyploidization events from chromosome numbers. versification is a subject of debate. Whole-genome duplications Although unavoidable, inferences from chromosome numbers precede the origins of many major clades (e.g., angiosperms, require assumptions about which numbers represent polyploids Brassicaceae, Poaceae), suggesting that polyploidy drives diversi- and when the polyploids arose. fication. However, theoretical arguments and empirical studies Phylogenetic trees of nuclear genes can reliably identify allo- suggest that polyploid lineages may actually have lower specia- polyploidization events (17–21) because they produce charac- tion rates and higher extinction rates than diploid lineages. -
Cecidomyiidae: Diptera) Reared from Namely, Contarinia Asperae Sp
JoTT NOTE 2(3): 773-777 Two new Indian gall midges of 2003-2008 in Nanded District of the genus Contarinia Rondani Maharashtra State revealed two new species of genus Contarinia Rondani, (Cecidomyiidae: Diptera) reared from namely, Contarinia asperae sp. nov. Amaranthaceae & Poaceae bred from leaf galls of Achyranthes aspera L. (Amaranthaceae) and Contarinia dichanthiumae M.S. Siddiqui 1, K.A. Ahad Najam 2, & V.D. Deshpande 2 sp. nov. reared from ear heads of Dichanthium aristatum 1,2 Hub. (Poaceae). Presently, 13 species under the genus P.G. Department of Zoology, N.E.S. Science College, Nanded, Maharashtra 431603, India Contarinia are reported from India. With the addition of Email: 1 [email protected] these two new species the number of species is now 15. All type slides are presently retained for the time being with the P.G. Department of Zoology, Science College, Nanded. Family Cecidomyiidae (= Itonididae) is one of the largest but youngest family of nematocerous Diptera having worldwide distribution. Insects commonly known Contarinia asperae sp. nov. as gall midges are included in this family. Many of them (Figs. 1-16) produce characteristics galls, i.e., deformities on various plant parts on both dicotyledon and monocotyledon plants Material examined caused by gall midges of the subfamily Cecidomyiinae; Holotype: Male, 17.xi.2006, (slide no Cont.1) labelled however members of the subfamilies Lestremiinae and as, “reared from leaf galls of Achyranthes aspera L. Porricondylinae do not produce such galls. Gall midges (Amaranthaceae), Bhokar forest, Nanded District, India, have phytophagus, saprophagus, xylophagus and dissected and mounted on slide, coll. -
Phillips Alyssa Spring 2018 Thesis.Pdf
Abstract A compilospecies is defined as a genetically aggressive taxa that “steals” or incorporates the genomes of other taxa via introgressive hybridization. This concept was first defined in Bothriochloa, Capillipedium, and Dichanthium (the BCD clade). Within this clade, Bothriochloa bladhii was identified as the compilospecies. Proper cytological techniques and accurate chromosome counts are needed to begin investigations to understand the mode of hybridization and to track “dominant” genomes. Techniques for preparation of meiotic chromosome spreads in species with more than 60 chromosomes are lacking in the literature. In this study, two methods for preparing chromosomes in the BCD clade are presented. These methods are adapted from the ‘SteamDrop’ (Kirov et al., 2014) and modified drop method (Kuo et al., 2016). Recommendations for further cytological work on the BCD clade based on these experiences are also suggested. Introduction Jack Harlan and J.M.J. de Wet (1963) described a new species concept that depicts how polyploidy complexes evolve through a mechanism of introgressive hybridization and genome dominance. They termed this the compilospecies concept. The combination of hybridization and genome dominance results in a large range of morphological variation within species and across genera, in some cases (R. P. Celarier & Harlan, 1955). For this reason, the compilospecies concept cannot be studied through morphological or geographical data. In 2014, Estep et. al. built a phylogenetic tree to study the compilospecies in bluestem grasses (Bothriochloa, Capillipedium, and Dichanthium), the same system Harlan and de Wet used to describe the compilospecies concept. The phylogenetic analysis verified the polyploidy complex and that gene flow between members of the BCD clade had occurred, but concluded it was impossible to study this concept using phylogenetic data alone. -
Plant Identification - Is It Important?
August 26, 2004 Welcome, This year marks the 40th Anniversary of the James E. "Bud" Smith Plant Materials Center here at Knox City, Texas. This Plant Materials Center (PMC) and the other 25 PMCs around the nation originated from a system of nurseries set up in 1933 to produce the much- needed plants and seeds for healing the scars of erosion caused by years and years of up-and-down hill farming, droughts, and floods. Today the USDA Natural Resources Conservation Service manages the Plant Materials Program to produce plants and seeds for many purposes such as wildlife habitat, recreation, forages, aesthetics, water quality, as well as erosion control. You will learn more about the PMC and the Program during today's field day. I encourage you to take a tour of the evaluations and production fields, view the displays in the barns, and attend one or both of the workshops. We are happy to have your here today. Thanks for coming. Dr. Larry D. Butler State Conservationist August 17, 2004 RE: Knox City Plant Materials Center 40th Anniversary Celebration Dear Conservation Friends: I had the pleasure of attending and working the Knox City Plant Materials Center’s 25th Anniversary event. It had a huge impact on my life and career! As a range conservationist by technical training, I enjoy the plant aspect of our work. I had enjoyed limited work with the Plant Materials Program up to that point. Soon after that event, I was selected as the Plant Materials Specialist for the states of Missouri, Iowa and Illinois. -
Dichanthium Caricosum Scientific Name Dichanthium Caricosum (L.) A
Tropical Forages Dichanthium caricosum Scientific name Dichanthium caricosum (L.) A. Camus Synonyms Stoloniferous perennial (CPI 84719) Basionym: Andropogon caricosus L. Family/tribe Inflorescence a digitate panicle comprising mostly 2-4 racemes; no Family: Poaceae (alt. Gramineae) subfamily: pubescence on peduncle (distinguishing Panicoideae tribe: Andropogoneae subtribe: feature) Anthristiriinae. Morphological description Stoloniferous perennial, stolons spreading to 1.5–2 m; tillers erect to 30–80 cm or decumbent, tufted at stolon nodes. Stems often blue-tinged. Leaf blades lanceolate, 4–20 (–30) cm long, 2–7 (–15) mm wide, glabrous or with a few hairs at base, margins Nadi bluegrass (D. caricosum) pasture, smooth or scabrid, apex acuminate; ligule membranous, Seed units Fiji less than 1 mm, margin ciliate. Culms geniculately ascending to 1 m, peduncle glabrous, nodes glabrous to finely pubescent. Inflorescence digitate panicle comprising (1–) 2–4, 2.5–5, 2 –6 (–7.5) cm long; rachis many-jointed, fragile at the nodes, subterete, ciliate on margins, internodes and secondary peduncles filiform. Spikelets paired, close-packed and overlapping along the rachis; fertile spikelet sessile bearing 10–25 mm, weakly geniculate awn; sterile spikelet pedicellate. Caryopsis obovate-oblong. Similar species D. caricosum: peduncle nodes glabrous or shortly pubescent; peduncle internodes glabrous. D. aristatum: peduncle nodes glabrous or shortly pubescent; short, dense pubescence on peduncle immediately below lowest raceme. D. annulatum: peduncle nodes -
Scientific Name Common Name Agavaceae Agave Family Manfreda Longiflora Longflower Tuberose # Yucca Arkansana Arkansas Yucca Yucca Treuleana Yucca
Caldwell Monocots, Ferns & Allies As of February 13, 2015 This checklist of the vascular plants of Caldwell County is primarily based on the collections in the herbarium at Plant Resource Center, University of Texas, Austin. The USDA files were searched and the added records are indicated with an asterisk (*). Several local lists were also utilized, the most comprehensive being the plant list from Lockhart State Park. These local records which were additions to the PRC list are indicated with a pound sign (#). Rare plants listed from Rare Plants of Texas by Poole, et.al. are indicated with an exclamation point (!). Species marked in bold are listed on the Texas Department of Agriculture Noxious Weeds list. Scientific Name Common Name Agavaceae Agave Family Manfreda longiflora longflower tuberose # Yucca arkansana Arkansas yucca Yucca treuleana yucca # Alismataceae Water Plantain Family Echinodorus berteroi erect burhead Sagittaria graminea grassy arrowhead Sagittaria latifolia arrowhead or duck-potato Sagittaria longiloba long-lobed arrowhead Bromeliaceae Airplant Family Tillandsia recurvata ball moss # Tillandsia usneoides Spanish moss * Commelinaceae Spiderwort Family Commellina erecta whitemouth dayflower Tinantia anomala widow's tears Tradescantia edwardsiana plateau spiderwort Tradescantia hirsutiflora hairyflower spiderwort Tradescantia humulis Texas spiderwort Tradescantia ohioensis Ohio spiderwort Tradescantia reverchonii Reverchon's spiderwort Tradescantia subacaulis stemless spiderwort Cyperaceae Sedge Family Bulbostylis capillaris -
Barbacoas, Municipio De Yondó, Antioquia
SUSTENTO PARA LA DECLARATORIA DE UN ÁREA PROTEGIDA PÚBLICA EN LAS CIÉNAGAS DE BARBACOAS, MUNICIPIO DE YONDÓ, ANTIOQUIA Convenio Nº 1004 entre la Fundación Fundación Biodiversa Colombia Biodiversa Colombia y The Nature Conservancy (TNC) Fundación Biodiversa Colombia 1 SUSTENTO PARA LA DECLARATORIA DE UN ÁREA PROTEGIDA PÚBLICA EN LAS CIÉNAGAS DE BARBACOAS, MUNICIPIO DE YONDÓ, ANTIOQUIA © 2014. Primera Edición. Fundación Biodiversa Colombia INVESTIGADORES Dafna Camila Angel-Escobar Bióloga, MSc. Ciencias ambientales Susana Rodríguez-Buriticá Bióloga, Ph.D. Ecología y Conservación María Camila Buitrago-Grisales Administradora del Medio Ambiente y los Recursos Naturales FOTOGRAFÍAS Portada: Fernando Arbeláez MSc. Contraportada: Catalina Giraldo, MFA. Fundación Biodiversa Colombia 2 SUSTENTO PARA LA DECLARATORIA DE UN ÁREA PROTEGIDA PÚBLICA EN LAS CIÉNAGAS DE BARBACOAS, MUNICIPIO DE YONDÓ, ANTIOQUIA TABLA DE CONTENIDO 0. INTRODUCCIÓN ..................................................................................................... 7 1. LOCALIZACIÓN GENERAL DEL ÁREA DE ESTUDIO ........................................... 8 2. CARACTERIZACIÓN DEL ÁREA PROPUESTA ................................................... 11 2.1 CARACTERIZACIÓN BIOFÍSICA..................................................................... 11 2.1.1 Geología .................................................................................................... 11 2.1.2 Geomorfología ..........................................................................................