DOCSLIB.ORG

Supplemental Material For: Inferring the Total-Evidence Timescale of Marattialean Fern Evolution in the Face of Extreme Model Sensitivity

Total Page：16

File Type：pdf, Size：1020Kb

Download full-text PDF Read full-text
Supplemental Material For: Inferring the Total-Evidence Timescale of Marattialean Fern Evolution in the Face of Extreme Model Sensitivity Supplemental Material for: Inferring the Total-Evidence Timescale of Marattialean Fern Evolution in the Face of Extreme Model Sensitivity Contents Sx1Morphological Data S6 Sx2Accessions S9 Sx3Graphical Models S15 Sx3.1Substitution Model . S15 Sx3.2Molecular Clock Model . S16 Sx3.3Morphological Transition Models . S17 Sx3.4Morphological Clock Models . S20 Sx3.5Tree Models . S22 Sx4MCMC Analyses S27 Sx4.1MCMC Diagnosis . S27 Sx5Posterior-Predictive Simulation S28 Sx6Empirical Considerations: Taxon Sample and Rooting Strategies S29 Sx6.1Ancient plants . S29 Sx6.2Polarized rooting . S29 Sx6.3Ingroup-only . S30 Sx6.4Results . S30 Sx7Extended Results S32 Sx7.1Ingroup Sampling Fraction . S32 Sx7.2Overall Sampling Fraction . S42 Sx7.3Ingroup vs. Overall Sampling Fraction . S53 Sx7.4Uniform Tree Model . S54 Sx7.5Polarized Analysis . S59 Sx7.6Ancient Plants Analysis . S61 Sx7.7Ingroup Analysis . S63 Sx7.8Comparing Empirical Considerations . S65 S1 Contents S2 Sx7.9Extant Phylogenies . S69 Sx7.10StochasticMaps . S71 Sx7.11Unrooted vs. Rooted Topologies . S86 Sx8Model Adequacy for Relaxed Clocks S90 List of Figures S1 The GTR+I+G substitution model . S15 S2 The uncorrelated lognormal (UCLN) relaxed molecular clock model . S16 S3 The Mk morphological model . S17 S4 The Mk+G morphological model . S17 S5 The F81 morphological model . S18 S6 The F81+G morphological model . S19 S7 The “linked” relaxed morphological model . S20 S8 The “unlinked” relaxed morphological model . S21 S9 The uniform tree model . S22 S10 The CRFBD tree model . S23 S11 The EFBDy tree model . S24 S12 The EFBDl,m tree model . S25 S13 The EFBDl,m,y tree model . S26 S14 Comparing distributions of molecular trees among model combinations . S32 S15 Comparing distributions of extinct trees among model combinations . S33 S16 Comparing lineage-through-time curves among model combinations . S34 S17 Comparing lineage-through-time curves of extant taxa among model combinations . S34 S18 Comparing divergence-time estimates for each clade by morphological transition model S35 S19 Comparing divergence-time estimates for each clade by morphological clock model . S36 S20 Comparing divergence-time estimates for each clade by tree model . S37 S21 The maximum clade credibility tree under the preferred model . S38 S22 The 20%-rule consensus tree under the preferred model . S39 S23 Diversification over time under the EFBDl,m,y model . S40 S24 Diversity through time under each fossilized birth-death model . S41 S25 Comparing distributions of trees among model combinations using the overall sam- pling fraction . S42 S26 Comparing distributions of molecular trees among model combinations using the over- all sampling fraction . S43 S27 Comparing distributions of extinct trees among model combinations using the overall sampling fraction . S44 S28 Average lineage-through-time curves among model combinations using the overall sampling fraction . S45 S29 Comparing lineage-through-time curves among model combinations using the overall sampling fraction . S45 S30 Comparing lineage-through-time curves of extant taxa among model combinations us- ing the overall sampling fraction . S46 S31 Comparing divergence-time estimates for each clade by morphological transition model using the overall sampling fraction . S47 S32 Comparing divergence-time estimates for each clade by morphological clock model using the overall sampling fraction . S48 S33 Comparing divergence-time estimates for each clade by tree model using the overall sampling fraction . S49 S34 Comparing model adequacy among model combinations using the overall sampling fraction . S50 S35 The maximum clade credibility tree under the preferred model with overall sampling fraction . S51 S36 The 20%-rule consensus tree under the preferred model with overall sampling fraction . S52 S37 Comparing divergence-time estimates for each clade by assumed sampling fraction . S53 S38 The uniform tree model is an informative prior on node ages . S54 S39 The uniform tree model is an informative prior on lineage-through-time curves . S55 S40 The fossilized birth-death model is an informative prior on node ages when hyperpa- rameters are fixed . S56 S41 The maximum clade credibility tree under the uniform tree model . S57 S42 The 20%-rule consensus tree under the uniform tree model . S58 S43 The maximum clade credibility tree under the preferred model with polarized root . S59 S44 The 20%-rule consensus tree under the preferred model with polarized root . S60 S45 The maximum clade credibility tree under the preferred model with ancient plant fossils S61 S46 The 20%-rule consensus tree under the preferred model with ancient plant fossils . S62 S47 The maximum clade credibility tree under the preferred model and just ingroup taxa . S63 S48 The 20%-rule consensus tree under the preferred model and just ingroup taxa . S64 S49 The impact of empirical considerations on phylogenetic estimates. We compute the RF distances and KF distances between chronograms among our “empirical consid- erations” analyses and the “standard” dataset under the preferred models (left and middle, respectively). We only compare samples where the ingroup is inferred to be monophyletic, and pruned outgroup taxa before computing pairwise distances. We also computed the LTT curves for the ingroup taxa for the same sets of analyses, again conditioning on the monophyly of the ingroup and pruning outgroup taxa (right). We compare the ages of particular clades in Fig. S51. S65 S50 The impact of modeling and empirical considerations on divergence-time estimates of major clades. We plot the marginal posterior distribution of the age of each node (in rows) as a function of the morphological-transition model (column 1), the morphologi- cal clock model (column 2), the tree model (column 3), and the empirical considerations (column 4). White dots are the posterior median ages, and black bars correspond to the 50% (thick) and 95% (narrow) credible intervals. We report means, medians, and 95% CIs in the Supplemental Material (Tables S.3 and S.4) . S65 S51 Comparing divergence-time estimates for each clade with different empirical consider- ations . S67 S52 The maximum clade credibility trees for extant taxa among tree models . S69 S53 The maximum clade credibility trees for extant taxa among empirical datasets . S70 S54 Stochastic map for character 23: degree of pinnation . S72 S55 Stochastic map for character 28: foliar abaxial idioblasts . S73 S56 Stochastic map for character 52: synangial suture between valves . S74 S57 Stochastic map for character 54: number of sporangia per synangium . S75 S58 Stochastic map for character 55: synangium symmetry in x.s. S76 S59 Stochastic map for character 57: synangium shape in long section pre-dehiscence . S77 S60 Stochastic map for character 58: sporangium or synangium pedicel or receptacle histologyS78 S61 Stochastic map for character 59: sporangium tip extension . S79 S62 Stochastic map for character 62: bilateral synangium dehiscence . S80 S63 Stochastic map for character 70: spore ornamentation location . S81 S64 Stochastic map for character 75: eusporangium cavity shape . S82 S65 Stochastic map for character 77: synangium sporangia spread out from center on de- hiscence . S83 S66 Stochastic map for character 78: synangium location on pinnule . S84 S67 Stochastic map for character 87: annulus of thick-walled cells . S85 S68 The maximum clade credibility tree under the unrooted (non-clock) model . S87 S69 Topological conflict beween rooted and unrooted MCC trees . S88 S70 Topological conflict beween rooted and unrooted MRC trees . S89 S71 Comparing distributions of morphograms with different taxon sets . S90 S72 Widths of posterior-predictive distributions between linked and unlinked morpholog- ical clock models . S91 Sx1. Morphological Data S6 Sx1 Morphological Data Our morphological dataset was largely derived from Rothwell et al.(2018b), which itself relied heav- ily on Hill and Camus(1986) and Murdock(2008), and amended as necessary (see S x1). We based character and character-state circumscriptions, as well as the character coding itself, on specimens ex- amined at VT and on additional literature (Holttum 1978; Rolleri 1993; Rolleri et al. 2003; Christenhusz 2010a,b; He et al. 2013; Senterre et al. 2014). In a departure from Rothwell et al.(2018b)—which sim- plified stomata and pulvinus characters, and altered coding to avoid nested states—we instead used contingent character coding (Forey and Kitching 2000; Brazeau 2011). Our coding for the outgroup taxa was based on literature and our examination of specimens. Our new characters were primar- ily focused on the leptosporangiate ferns (our outgroup), e.g., the presence of linear aerophores (Sx1 character 27) and morphology and variation within leptosporangia (Sx1 characters 93 − 98). Our final morphological matrix comprised 98 discrete characters describing anatomy and gross morphology; in total, there were 79 binary characters, 10 three-state characters, four four-state characters, three five-state characters, one six-state.
Load more

Recommended publications
  • Pteridophyte Fungal Associations: Current Knowledge and Future Perspectives
    This is a repository copy of Pteridophyte fungal associations: Current knowledge and future perspectives. White Rose Research Online URL for this paper: http://eprints.whiterose.ac.uk/109975/ Version: Accepted Version Article: Pressel, S, Bidartondo, MI, Field, KJ orcid.org/0000-0002-5196-2360 et al. (2 more authors) (2016) Pteridophyte fungal associations: Current knowledge and future perspectives. Journal of Systematics and Evolution, 54 (6). pp. 666-678. ISSN 1674-4918 https://doi.org/10.1111/jse.12227 © 2016 Institute of Botany, Chinese Academy of Sciences. This is the peer reviewed version of the following article: Pressel, S., Bidartondo, M. I., Field, K. J., Rimington, W. R. and Duckett, J. G. (2016), Pteridophyte fungal associations: Current knowledge and future perspectives. Jnl of Sytematics Evolution, 54: 666–678., which has been published in final form at https://doi.org/10.1111/jse.12227. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-Archiving. Reuse Unless indicated otherwise, fulltext items are protected by copyright with all rights reserved. The copyright exception in section 29 of the Copyright, Designs and Patents Act 1988 allows the making of a single copy solely for the purpose of non-commercial research or private study within the limits of fair dealing. The publisher or other rights-holder may allow further reproduction and re-use of this version - refer to the White Rose Research Online record for this item. Where records identify the publisher as the copyright holder, users can verify any specific terms of use on the publisher’s website.
    [Show full text]
  • A Revised Checklist of Fijian Ferns and Lycophytes
    Telopea13(3) 513–562 A revised checklist of Fijian ferns and lycophytes P.J. Brownsey and L.R. Perrie Museum of New Zealand Te Papa Tongarewa, P.O. Box 467, Wellington, New Zealand Email: [email protected] Abstract A revised Checklist of 331 species of Fijian ferns and lycophytes is presented here. Six species are presumed to be introduced and 48 (15%) are endemic. The annotated list includes family, genus and species names for all Fijian ferns, and aligns them with names used by Brownlie (1977) in his Pteridophyte Flora of Fiji. Since publication of Brownlie’s work, 29 species have been added to the Fijian fern flora, 79 of the previously recorded taxa now have different generic and/or species names, and c. 40% are placed in different families. Specimens of ferns in the South Pacific Regional Herbarium (SUVA) were examined, and all have been re-identified as far as possible using the updated names. The significance of this work in the context of the wider Pacific region is discussed. Introduction This Checklist of ferns and lycophytes for Fiji updates the names used by Brownlie (1977) in his Pteridophyte Flora of Fiji. There have been significant changes to the taxonomy of ferns since that time, particularly with re-circumscriptions of families and genera (Smith et al. 2006). Subsequent work focused on the fern flora of Fiji includes that of Kramer & Zogg (1988), Parris (1994), Ebihara & Iwatsuki (2007), and the National Museum of Nature and Science (2008). Since our initial unpublished report was submitted (Brownsey & Perrie 2008), Japanese pteridologists have published Illustrated Flora of ferns and fern allies of South Pacific Islands (National Museum of Nature and Science 2008).
    [Show full text]
  • MARATTIA-SAP-Edited
    Photo credit: RBG Kew SUMMARY Taxonomy: Kingdom: Plantae; Phylum: Polypodiophyta; Class: Polypodiopsida; Order: Marattiales; Family: Marattiaceae; Species: Ptisana purpurascens Nativeness: Endemic to Ascension Island Description: This imposing fern is the largest of Ascension Island’s endemic plant species, with dark green, twice pinnate fronds up to 1m in length. The stalks (or ‘petioles’) of the fronds are purplish in colour which gives the species its scientific name. It is only found on the damp, mist-drenched slopes around the summit of Green Mountain. IUCN Red List status: Critically Endangered Local trend: Probably stable Threats: The major threat to P. purpurascens is competition with invasive plant species; secondary threats include grazing by introduced mammals and climate change-induced habitat alteration. Citation: Ascension Island Government (2015) Ptisana purpurascens species action plan. In: The Ascension Island Biodiversity Action Plan. Ascension Island Government Conservation Department, Georgetown, Ascension Island Ascension Island BAP: Ptisana purpurascens 2 2. Distribution Global Ptisana purpurascens is endemic to Ascension Island. Local Ptisana purpurascens is known only from the central part of Ascension Island. It occurs on the uppermost slopes of Green Mountain at altitudes between 700 and 860m. The majority of the population is confined to a small area on steep, south and east facing slopes descending from the summit to the intersection of Elliott's Pass with Buddleia Ravine and Gooseberry Ravine. This area has retained the last vestiges of a fern-dominated community similar to that observed by early visitors to the island, although it is increasing invaded by non- native weeds. A few isolated patches are scattered in the highest parts of the south west slopes of Green Mountain, where it is very rare.
    [Show full text]
  • PTERIDOLOGIST 2012 Contents: Volume 5 Part 5, 2012 Scale Insect Pests of Ornamental Ferns Grown Indoors in Britain
    PTERIDOLOGIST 2012 Contents: Volume 5 Part 5, 2012 Scale insect pests of ornamental ferns grown indoors in Britain. Dr. Chris Malumphy 306 Familiar Ferns in a Far Flung Paradise. Georgina A.Snelling 313 Book Review: A Field Guide to the Flora of South Georgia. Graham Ackers 318 Survivors. Neill Timm 320 The Dead of Winter? Keeping Tree Ferns Alive in the U.K. Mike Fletcher 322 Samuel Salt. Snapshots of a Victorian Fern Enthusiast. Nigel Gilligan 327 New faces at the Spore Exchange. Brian and Sue Dockerill 331 Footnote: Musotima nitidalis - a fern-feeding moth new to Britain. Chris Malumphy 331 Leaf-mining moths in Britain. Roger Golding 332 Book Review: Ferns of Southern Africa. A Comprehensive Guide. Tim Pyner 335 Stem dichotomy in Cyathea australis. Peter Bostock and Laurence Knight 336 Mrs Puffer’s Marsh Fern. Graham Ackers 340 Young Ponga Frond. Guenther K. Machol 343 Polypodium Species and Hybrids in the Yorkshire Dales. Ken Trewren 344 A Challenge to all Fern Lovers! Jennifer M. Ide 348 Lycopodiums: Trials in Pot Cultivation. Jerry Copeland 349 Book Review: Fern Fever. Alec Greening 359 Fern hunting in China, 2010. Yvonne Golding 360 Stamp collecting. Martin Rickard 365 Dreaming of Ferns. Tim Penrose 366 Variation in Asplenium scolopendrium. John Fielding 368 The Case for Filmy Ferns. Kylie Stocks 370 Polystichum setiferum ‘Cristato-gracile’. Julian Reed 372 Why is Chris Page’s “Ferns” So Expensive? Graham Ackers 374 A Magificent Housefern - Goniophlebium Subauriculatum. Bryan Smith 377 A Bolton Collection. Jack Bouckley 378 360 Snails, Slugs, Grasshoppers and Caterpillars. Steve Lamont 379 Sphenomeris chinensis.
    [Show full text]
  • Woodleigh Nursery Catalogue
    Web: woodleigh.co.nz/ Mail Order Catalogue – Hydrangeas & more Janica and Quin Amoore are pleased to present their catalogue. Woodleigh Nursery offers a huge range of hydrangea species/cultivars; and an eclectic selection of unusual plants. Woodleigh is a mail order nursery that dispatches NZ wide. We like to make it as easy as possible to shop with us, so feel free to phone or email us your order. We have developed a very informative website where you can easily access colour images of our plants. The website is constantly maintained with up-to-date information, including current availability of plants in this catalogue, varieties that we have only in small numbers and others as they come available. You are welcome to visit our nursery by appointment. We do encourage you to view our catalogue online first as not all varieties will be in flower. Please phone to arrange visit. We provide free handling and packaging for orders of $40 + freight or more. For orders less than $40 + freight a handling surcharge of $10 will be added. To make up your order why not buy a plant for a friend, Hydrangeas do make lovely gifts. The prices in the catalogue include GST. Freight varies according to where you live and the size of your order. As a guide, the minimum freight charge within the North Island is $15, and within the South Island is $25. An additional $6 / box required for rural delivery. This is for a box that will hold approx. 8 plants. We will provide a quote for freight when we confirm the order.
    [Show full text]
  • Summer 2012 - 45 President’S Message ~ Summer 2012
    THE HARDY FERN FOUNDATION P.O. Box 3797 Federal Way, WA 98063-3797 Web site: www.hardyfernfoundation.org The Hardy Fern Foundation was founded in 1989 to establish a comprehen¬ sive collection of the world’s hardy ferns for display, testing, evaluation, public education and introduction to the gardening and horticultural community. Many rare and unusual species, hybrids and varieties are being propagated from spores and tested in selected environments for their different degrees of hardiness and ornamental garden value. The primary fern display and test garden is located at, and in conjunction with, The Rhododendron Species Botanical Garden at the Weyerhaeuser Corporate Headquarters, in Federal Way, Washington. Affiliate fern gardens are at the Bainbridge Island Library, Bainbridge Island, Washington; Bellevue Botanical Garden, Bellevue, Washington; Birmingham Botanical Gardens, Birmingham, Alabama; Coastal Maine Botanical Garden, Boothbay, Maine; Dallas Arboretum, Dallas, Texas; Denver Botanic Gardens, Denver, Colorado; Georgia Perimeter College Garden, Decatur, Georgia; Inniswood Metro Gardens, Columbus, Ohio; Lakewold, Tacoma, Washington; Lotusland, Santa Barbara, California; Rotary Gardens, Janesville, Wisconsin; Strybing Arboretum, San Francisco, California; University of California Berkeley Botanical Garden, Berkeley, California; and Whitehall Historic Home and Garden, Louisville, Kentucky. Hardy Fern Foundation members participate in a spore exchange, receive a quarterly newsletter and have first access to ferns as they are ready
    [Show full text]
  • The Journey of a Book
    THE JOURNEY OF A BOOK Bartholomew the Englishman and the Properties of Things Map of Europe in c.1230, showing locations significant withinThe Journey of a Book. Approx. indications of the frontiers of Christendom (western and eastern) and Islam, and of the Mongol advance, are based on McEvedy, Colin. The New Penguin Atlas of Medieval History. London: Penguin Books, 1992, pp.73, 77. THE JOURNEY OF A BOOK Bartholomew the Englishman and the Properties of Things Elizabeth Keen Published by ANU E Press The Australian National University Canberra ACT 0200, Australia Email: [email protected] This title is also available online at: http://epress.anu.edu.au/journey_citation.html National Library of Australia Cataloguing-in-Publication entry Keen, Elizabeth Joy. Journey of a book : Bartholomew the Englishman and the Properties of things. ISBN 9781921313066 (pbk.). ISBN 9781921313073 (web). 1. Bartholomaeus Anglicus, 13th cent. De proprietatibus rerum. 2. Encyclopedias and dictionaries - Early works to 1600 - History and criticism. 3. Philosophy of nature - Early works to 1800. I. Title. All rights reserved. No part of this publication may be reproduced, stored in a retrieval system or transmitted in any form or by any means, electronic, mechanical, photocopying or otherwise, without the prior permission of the publisher. Cover design by Teresa Prowse Cover image: Cambridge University Library Gg. 6. 42. f. 5. St. Francis and Companion used by permission of the Syndics of Cambridge University Library. Printed by University Printing Services, ANU This edition © 2007 ANU E Press Table of Contents List of Figures vii Abbreviations ix Acknowledgements xi Chapter 1. Introduction 1 Chapter 2.
    [Show full text]
  • Taxonomic Notes on Vascular Plants in Japan and Its Adjacent Regions (II)
    J. Jpn. Bot. 86: 230–241 (2011) Taxonomic Notes on Vascular Plants in Japan and Its Adjacent Regions (II) Koji YONEKURA Botanical Gardens, Tohoku University, 12-2, Kawauchi, Sendai, 980-0862 JAPAN E-mail: [email protected] (Accepted on March 3, 2011) New combinations of 63 taxa of vascular plants in Japan and its adjacent regions are proposed: one pteridophyte and 62 angiosperms, that were during updating of the database YList (http://bean.bio.chiba-u.jp/bgplants/ylist_main.html) of the scientific and Japanese names of Japanese vascular plants and pteridophytes. Taxonomic and nomenclatural comments are given on (66) Ptisana boninensis, (70) Cinnamomum yabunikkei, (81) Arabidopsis halleri subsp. gemmifera, (82) Catolobus ligulifolia, (91) Elaeocarpus zollingeri, (103) Pseudognaphalium formosanum, (107) Anthoxanthum nitens, and (109) Sacciolepis spicata. (Continued from J. Jpn. Bot. 80(6): 323–333, 2005) Key words: Database, Japan, new combinations, nomenclature, vascular plants. The WEB BGPlants Index or YList (http:// it is considered a distinct species from its closest bean.bio.chiba-u.jp/bgplants/ylist_main.html) for ally P. ternatea (de Vriese) Murdock as stated by Japanese names and scientific names of Japanese Ohba (1971). Plants has been in operation since 2003. For Ptisana boninensis (Nakai) Yonek., comb. updating the database the author proposed 81 nov. new combinations in 65 species (Yonekura Marattia boninensis Nakai in J. Jpn. Bot. 13: 2005). This paper aims to supply further new 3, figs. 1 & 2 (1937). combinations for the same purpose. The serial Nom. Jap.: Ryûbintai-modoki. numbers employed here are continued from the previous paper. For more detailed imformation Spermatophyta – Angiospermae on synopsis, see WEB.
    [Show full text]
  • TAXON:Ptisana Salicina
    TAXON: Ptisana salicina (Sm.) SCORE: 4.0 RATING: Evaluate Murdock Taxon: Ptisana salicina (Sm.) Murdock Family: Marattiaceae Common Name(s): horseshoe fern Synonym(s): Marattia salicina Sm. king fern para potato fern Tawhiti para Assessor: Chuck Chimera Status: Assessor Approved End Date: 22 Sep 2016 WRA Score: 4.0 Designation: EVALUATE Rating: Evaluate Keywords: Robust Fern, Endangered, Edible, Shade-Tolerant, Wind-Dispersed Qsn # Question Answer Option Answer 101 Is the species highly domesticated? y=-3, n=0 n 102 Has the species become naturalized where grown? 103 Does the species have weedy races? Species suited to tropical or subtropical climate(s) - If 201 island is primarily wet habitat, then substitute "wet (0-low; 1-intermediate; 2-high) (See Appendix 2) High tropical" for "tropical or subtropical" 202 Quality of climate match data (0-low; 1-intermediate; 2-high) (See Appendix 2) High 203 Broad climate suitability (environmental versatility) y=1, n=0 n Native or naturalized in regions with tropical or 204 y=1, n=0 y subtropical climates Does the species have a history of repeated introductions 205 y=-2, ?=-1, n=0 ? outside its natural range? 301 Naturalized beyond native range y = 1*multiplier (see Appendix 2), n= question 205 n 302 Garden/amenity/disturbance weed n=0, y = 1*multiplier (see Appendix 2) n 303 Agricultural/forestry/horticultural weed n=0, y = 2*multiplier (see Appendix 2) n 304 Environmental weed n=0, y = 2*multiplier (see Appendix 2) n 305 Congeneric weed n=0, y = 1*multiplier (see Appendix 2) n 401 Produces spines,
    [Show full text]
  • Annual Review of Pteridological Research
    Annual Review of Pteridological Research Volume 28 2014 ANNUAL REVIEW OF PTERIDOLOGICAL RESEARCH VOLUME 28 (2014) Compiled by Klaus Mehltreter & Elisabeth A. Hooper Under the Auspices of: International Association of Pteridologists President Maarten J. M. Christenhusz, Finland Vice President Jefferson Prado, Brazil Secretary Leticia Pacheco, Mexico Treasurer Elisabeth A. Hooper, USA Council members Yasmin Baksh-Comeau, Trinidad Michel Boudrie, French Guiana Julie Barcelona, New Zealand Atsushi Ebihara, Japan Ana Ibars, Spain S. P. Khullar, India Christopher Page, United Kingdom Leon Perrie, New Zealand John Thomson, Australia Xian-Chun Zhang, P. R. China AND Pteridological Section, Botanical Society of America Kathleen M. Pryer, Chair Published by Printing Services, Truman State University, December 2015 (ISSN 1051-2926) ARPR 2014 TABLE OF CONTENTS 1 TABLE OF CONTENTS Introduction ................................................................................................................................ 2 Literature Citations for 2014 ....................................................................................................... 7 Index to Authors, Keywords, Countries, Genera, Species ....................................................... 61 Research Interests ..................................................................................................................... 93 Directory of Respondents (addresses, phone, fax, e-mail) ..................................................... 101 Cover photo: Diplopterygium pinnatum,
    [Show full text]
  • Athyrium Nakanoi Makino (Athyriaceae), a New Record from the Philippines and an Identification Key to the Malesian Athyrium Sect
    PRIMARY RESEARCH PAPER | Philippine Journal of Systematic Biology DOI 10.26757/pjsb2019a13006 Athyrium nakanoi Makino (Athyriaceae), a new record from the Philippines and an identification key to the Malesian Athyrium Sect. Polystichoides Fulgent P. Coritico*1,2, Victor B. Amoroso1,2 and Yea-Chen Liu3 Abstract Athyrium nakanoi Makino is a new fern species record for the Philippines, discovered in Mt. Dulang-Dulang, Kitanglad Range, Mindanao, Philippines extending its original distribution from India, Nepal, Bhutan, China, Taiwan and Japan, Indonesia and Malaysia. Diagnostic description of the species is provided together with its distribution, conservation status and a dichotomous key to the Malesian Athyrium Sect. Polystichoides. Keywords: Mindanao, Athyriaceae, ferns, pteridophytes Introduction from short- to long-creeping, or suberect to erect, (3) divisions of fronds, from pinnate, bi-pinnate to tripinnate-pinnatifid, (4) The Philippines is home to 1,100 species of ferns and shape of indusia, from round to reniform, J-shaped or oblong to lycophytes (“pteridophytes”), belonging to 154 genera and 34 short linear, (5) shape of sori highly variable from reniform to families (Amoroso et al. 2016). This number continues to elongate (Liu et al. 2009). increase with new species and new records that have been Mt. Kitanglad Range Natural Park in northern Mindanao, discovered recently in the country by conducting field work in Philippines, is a protected area and considered as one of the the unexplored mountain ecosystems. The genus Athyrium is ASEAN Heritage Parks in northern Mindanao, the Philippines. mainly distributed in the Asian temperate region, with ca. 220 Encompassing 37,236 ha over the North Central portion of species in the world (PPG1 2016, Wardani & Adjie 2018).
    [Show full text]
  • Supplement to Global Patterns and Drivers of Phylogenetic Structure In
    Supplementary information Weigelt, P., Kissling, W.D., Kisel, Y., Fritz, S.A., Karger, D.N., Kessler, M., Lehtonen, S., Svenning, J.-C. and Kreft, H. Global patterns and drivers of phylogenetic structure in island floras. Scientific Reports. Content Supplementary Text S1. Ecological and biogeographical characteristics of angiosperms, palms and ferns relevant to the hypothesized relationships between environmental factors and phylogenetic diversity and structure. Supplementary Methods S1. Floras and phylogenies. Supplementary Methods S2. Statistical models and spatial autocorrelation. Supplementary Table S1. Pearson correlations of phylogenetic community metrics within angiosperms, palms and ferns on islands worldwide. Supplementary Table S2. Pearson correlations of phylogenetic community metrics among angiosperms, palms and ferns on islands worldwide. Supplementary Table S3. Best Generalized Additive Models based on Akaike's Information Criterion corrected for small sampling sizes of the relationships of the standardized effect size of phylogenetic diversity of angiosperms, palms and ferns with environmental factors on islands. Supplementary Table S4. Variable importance estimated from all possible multi-predictor Generalized Additive Models for the standardized effect size of mean pairwise phylogenetic distance of angiosperms, palms and ferns on islands in dependence on environmental predictors. Supplementary Table S5. Best Generalized Additive Models based on Akaike's Information Criterion corrected for small sampling sizes of the relationships of the standardized effect size of mean pairwise phylogenetic distance of angiosperms, palms and ferns with environmental factors on islands. Supplementary Table S6. Pearson correlations among predictor variables used to explain phylogenetic structure of island floras. Supplementary Table S7. Pearson correlations among phylogenetic community metrics calculated with a global island species pool and three different regional species pool delineations.
    [Show full text]