Discovery of the Canonical Calvin–Benson Cycle
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Lecture 29 Spring 2007
Geol. 656 Isotope Geochemistry Lecture 29 Spring 2007 ISOTOPE FRACTIONATION IN THE BIOSPHERE INTRODUCTION As we noted, biological processes often involve large isotopic fractionations. Indeed, biological proc- esses are the most important cause of variations in the isotope composition of carbon, nitrogen, and sul- fur. For the most part, the largest fractionations occur during the initial production of organic matter by the so-called primary producers, or autotrophs. These include all plants and many kinds of bacteria. The most important means of production of organic matter is photosynthesis, but organic matter may also be produced by chemosynthesis, for example at mid-ocean ridge hydrothermal vents. Large frac- tions of both carbon and nitrogen occur during primary production. Additional fractionations also oc- cur in subsequent reactions and up through the food chain as hetrotrophs consume primary producers, but these are generally smaller. CARBON ISOTOPE FRACTIONATION DURING PHOTOSYNTHESIS The most important of process producing isotopic fractionation of carbon is photosynthesis. As we earlier noted, photosynthetic fractionation of carbon isotopes is primarily kinetic. The early work of Park and Epstein (1960) suggested fractionation occurred in several steps. Subsequent work has eluci- dated the fractionations involved in these steps, which we will consider in more detail here. For terrestrial plants (those utilizing atmospheric CO2), the first step is diffusion of CO2 into the boundary layer surrounding the leaf, through the stomata, and internally in the leaf. The average δ13C of various species of plants has been correlated with the stomatal conductance (Delucia et al., 1988), in- dicating that diffusion into the plant is indeed important in fractionating carbon isotopes. -
Lecture 7 - the Calvin Cycle and the Pentose Phosphate Pathway
Lecture 7 - The Calvin Cycle and the Pentose Phosphate Pathway Chem 454: Regulatory Mechanisms in Biochemistry University of Wisconsin-Eau Claire 1 Introduction The Calvin cycle Text The dark reactions of photosynthesis in green plants Reduces carbon from CO2 to hexose (C6H12O6) Requires ATP for free energy and NADPH as a reducing agent. 2 2 Introduction NADH versus Text NADPH 3 3 Introduction The Pentose Phosphate Pathway Used in all organisms Glucose is oxidized and decarboxylated to produce reduced NADPH Used for the synthesis and degradation of pentoses Shares reactions with the Calvin cycle 4 4 1. The Calvin Cycle Source of carbon is CO2 Text Takes place in the stroma of the chloroplasts Comprises three stages Fixation of CO2 by ribulose 1,5-bisphosphate to form two 3-phosphoglycerate molecules Reduction of 3-phosphoglycerate to produce hexose sugars Regeneration of ribulose 1,5-bisphosphate 5 5 1. Calvin Cycle Three stages 6 6 1.1 Stage I: Fixation Incorporation of CO2 into 3-phosphoglycerate 7 7 1.1 Stage I: Fixation Rubisco: Ribulose 1,5- bisphosphate carboxylase/ oxygenase 8 8 1.1 Stage I: Fixation Active site contains a divalent metal ion 9 9 1.2 Rubisco Oxygenase Activity Rubisco also catalyzes a wasteful oxygenase reaction: 10 10 1.3 State II: Formation of Hexoses Reactions similar to those of gluconeogenesis But they take place in the chloroplasts And use NADPH instead of NADH 11 11 1.3 State III: Regeneration of Ribulose 1,5-Bisphosphosphate Involves a sequence of transketolase and aldolase reactions. 12 12 1.3 State III: -
Plant- Physiology and the PLANT CELL on the ASPP Homepage Click on "Publications" Click Onjournal Title
THE NEWSLETTER OF THE AMERICAN SOCIETY OF PLANT PHYSIOLOGISTS Volume 24, Number 2 March/April 1997 Preparing for a Record Turnout ill Vancouver lant Biology '97: A View from the Pacific Rim, submitted from anywhere in the world. Second, it Pthrough a combination of factors and a lot of made the sorting and planning process for the hard work, has culminated in what promises to be program committee go much more smoothly than one of the largest and most international plant usual. Third, it will result in an on-line searchable science meetings ever. The American Society of abstract database and meeting program that will be Plant Physiologists and the Canadian Society of made accessible through ASPP's web page in April. Plant Physiologists, along with the help of the And last, a more complete and cohesive abstract Japanese Society of Plant Physiologists and the supplement and printed program will be the final Australian Society of Plant Physiologists, Inc., and result. the more widespread use of the Internet, have announced the meeting all over the world. Informa Oral and Poster Scheduling tion about the meeting has been available on ASPP's web page since last summer, and numerous l A]hiIe we are pleased and excited about the III messages about the conference have been posted to unprecedented number of abstract submis VV pertinent plant science newsgroups. Full-color sions for Plant Biology '97, the program committee advertisements have been displayed in the journals was also faced with a new set of scheduling or other advertising modes sponsored by all four challenges. -
Carbohydrates: Occurrence, Structures and Chemistry
Carbohydrates: Occurrence, Structures and Chemistry FRIEDER W. LICHTENTHALER, Clemens-Schopf-Institut€ fur€ Organische Chemie und Biochemie, Technische Universit€at Darmstadt, Darmstadt, Germany 1. Introduction..................... 1 6.3. Isomerization .................. 17 2. Monosaccharides ................. 2 6.4. Decomposition ................. 18 2.1. Structure and Configuration ...... 2 7. Reactions at the Carbonyl Group . 18 2.2. Ring Forms of Sugars: Cyclic 7.1. Glycosides .................... 18 Hemiacetals ................... 3 7.2. Thioacetals and Thioglycosides .... 19 2.3. Conformation of Pyranoses and 7.3. Glycosylamines, Hydrazones, and Furanoses..................... 4 Osazones ..................... 19 2.4. Structural Variations of 7.4. Chain Extension................ 20 Monosaccharides ............... 6 7.5. Chain Degradation. ........... 21 3. Oligosaccharides ................. 7 7.6. Reductions to Alditols ........... 21 3.1. Common Disaccharides .......... 7 7.7. Oxidation .................... 23 3.2. Cyclodextrins .................. 10 8. Reactions at the Hydroxyl Groups. 23 4. Polysaccharides ................. 11 8.1. Ethers ....................... 23 5. Nomenclature .................. 15 8.2. Esters of Inorganic Acids......... 24 6. General Reactions . ............ 16 8.3. Esters of Organic Acids .......... 25 6.1. Hydrolysis .................... 16 8.4. Acylated Glycosyl Halides ........ 25 6.2. Dehydration ................... 16 8.5. Acetals ....................... 26 1. Introduction replacement of one or more hydroxyl group (s) by a hydrogen atom, an amino group, a thiol Terrestrial biomass constitutes a multifaceted group, or similar heteroatomic groups. A simi- conglomeration of low and high molecular mass larly broad meaning applies to the word ‘sugar’, products, exemplified by sugars, hydroxy and which is often used as a synonym for amino acids, lipids, and biopolymers such as ‘monosaccharide’, but may also be applied to cellulose, hemicelluloses, chitin, starch, lignin simple compounds containing more than one and proteins. -
BIOLOGICAL SCIENCE FIFTH EDITION Freeman Quillin Allison 10
BIOLOGICAL SCIENCE FIFTH EDITION Freeman Quillin Allison 10 Lecture Presentation by Cindy S. Malone, PhD, California State University Northridge © 2014 Pearson Education, Inc. Roadmap 10 In this chapter you will learn how Photosynthesis links life to the power of the Sun by previewing by examining Conversion of light How photosynthetic pigments energy into chemical capture light energy 10.2 energy 10.1 then looking closer at Energy flow and ATP Photosystem II production10.3 Photosystem I and exploring CO2 fixation and reduction to The Calvin cycle form sugars 10.4 © 2014 Pearson Education, Inc. ▪ Photosynthesis – Is the process of using sunlight to produce carbohydrate – Requires sunlight, carbon dioxide, and water – Produces oxygen as a by-product ▪ The overall reaction when glucose is the carbohydrate: 6 CO2 6 H2O light energy C6H12O6 6 O2 © 2014 Pearson Education, Inc. ▪ Photosynthesis contrasts with cellular respiration – Photosynthesis is endergonic – Reduces CO2 to sugar – Cellular respiration is exergonic – Oxidizes sugar to CO2 Electrons are Electrons are pulled __________; pulled _______________; C is _________ O is _________ Potential energy increases 6 CO2 6 H2O Input of 6 O2 (carbon dioxide) (water) energy Glucose (oxygen) © 2014 Pearson Education, Inc. ▪ Light-dependent reactions – Produce O2 from H2O ▪ Calvin cycle reactions – Produce sugar from CO2 ▪ The reactions are linked by electrons – Released in the light-dependent reactions – When water is split to form oxygen gas – Then transferred to the electron carrier NADP+, forming NADPH © 2014 Pearson Education, Inc. ▪ The Calvin cycle Figure 10.2 then uses Sunlight (Light – These electrons energy) – The potential Light- energy in ATP capturing reactions – To reduce CO2 to (Chemical make sugars energy) Calvin cycle (Chemical energy) © 2014 Pearson Education, Inc. -
AP Biology-00001310.Cdr
® INTERNATIONAL ACADEMY OF SCIENCE Acellus AP Biology AP Biology Course Curriculum Unit 1 - Evolution Drives the Diversity and Unity of Life 46 Photosystems 1 Intro to AP Biology 47 Photophosphorylation 2 Nature of Science 48 Carbon Fixation (or Calvin Cycle) 3 Evidence for Evolution 49 Putting It Together - Photosynthesis and Respiration 4 Natural Selection - Descent with Modification 50 Feedback Mechanisms 5 Hardy - Weinberg Theorem 51 Cell Communication 6 Hardy - Weinberg Equilibrium Unit 6 - The Cell Cycle 7 Biological Evolution 52 Why Do Cells Divide? 8 Phylogeny - Evolutionary History 53 Origin of the Cell Cycle 9 Modern Synthesis Theory of Evolution 54 Chromosome Structure Unit 2 - Water Potential 55 Phases of the Cycle 10 Abiogenesis 56 Lab: Cell Division - Part I 11 Properties of Water 57 Lab: Cell Division - Part II 12 Organic Molecules 58 Variances in the Cell Cycle 13 Origin of Cells 59 Control of the Cell Cycle 14 Endosymbiosis 60 Uncontrolled Cell Cycle 15 Characteristics of Life 61 Lab: Cell Division - Part III 16 Cell Membranes - Structure Unit 7 - Mitosis and Meiosis 17 Selective Permeability 62 Two Types of Cell Reproduction 18 Diffusion and Cell Size 63 Meiosis Overview 19 Water Potential - Concentration Gradient 64 The Phases of Meiosis 20 Lab: Water Potential 65 Meiosis and Genetic Variation Unit 3 - Cell Structure 66 Lab: Cell Division - Part IV 21 Basic Cell Structure 67 Lab: Cell Division - Part V 22 Prokaryotes 68 Meiosis and Gamete Formation 23 Eukaryotes Unit 8 - History of Genetics 24 Mitochondria and Chloroplasts -
AP Biology Summer Assignment Holy Spirit Prep 2019
AP Biology Summer Assignment Holy Spirit Prep 2019 Textbook: “Principle of Life” 2nd edition, for the AP course 2018 Chapters 1-3 (pages 1-59) This summer assignment will cover the introduction to biology, chemistry of life, and essential macromolecules for life. The concepts covered in these chapters are either review from previous classes or relatively easy enough to allow you to work through them on your own. The more complex connections between these chapters will be discussed during the first two weeks of the school year. Biozone Workbook: “AP Biology 1” Student edition, 2nd edition 2017 and Biozone Workbook: “AP Biology 2” Student edition, 2nd edition 2017 Read each chapter in the text book, answer all the questions listed below, and complete the corresponding pages in the biozone workbooks covering those topics. The answers can be typed or handwritten for the questions below and written in the workbook for the biozone pages listed. Do not tear out the biozone workbook pages. I will check your answers directly from the workbook. This assignment will be due on Wednesday, Aug 21, 2019. We will have a test over the material during the second week of the school year. For questions, contact Mr. Harrison at [email protected] Chapter 1: Principles of Life Answer the following: 1. Organisms share many conserved biological, chemical, and structural characteristics. Briefly outline the 8 distinctive characteristics of life shared by all living organisms. 2. How do the shared characteristics on your list (in #1) provide evidence for evolution? 3. There are several competing hypotheses about the evolution of early life on Earth, but as life evolved, all cells clearly had requirements for raw materials and energy transfers. -
Photorespiration
Arjun Adhikari, Asst. Prof. M.C. College, Barpeta Photorespiration Photorespiration is a wasteful pathway that competes with the Calvin cycle. It begins when rubisco acts on oxygen instead of carbon dioxide. RuBP oxygenase-carboxylase (rubisco ), a key enzyme in photosynthesis. In the process of carbon fixation , rubisco incorporates carbon dioxide into an organic molecule during the first stage of the Calvin cycle . Rubisco is so important to plants that it makes upto 30% percent or more of the soluble protein in a typical plant leaf. But rubisco also has a major flaw: instead of always using CO 2 as a substrate, it sometimes picks up O2 instead. This side reaction initiates a pathway called photorespiration , which, rather than fixing carbon, actually leads to the loss of already -fixed carbon as CO 2. Photorespiration wastes energy and decreases sugar synthesis, so when rubisco initiates this pathway, it's committing a serious molecular mess. Rubisco binds to either CO 2 or O2 As we know , the enzyme rubisco can use either CO 2 or O2 as a substrate. Rubisco adds whichever molecule it binds to a five -carbon compound called ribulose -1,5-bisphosphate (RuBP). The reaction that uses CO 2 is the first step of the Calvin cycle and leads to the production of sugar. The reaction that uses O2 is the first step o f the photorespiration pathway, which wastes energy and "undoes" the work of the Calvin cycle . When a plant has its stomata, or leaf pores, open CO 2 diffuses in, O2 and water vapor diffuse out, and photorespiration is minimized. -
Aerospace Medicine & Biology Space Medicine & Biology Aero 9
Aerospace Medicine NASA SP-7011 (232) and Biology May 1982 IWNSA A Continuing Bibliography with Indexes (NASA-SP-701 1 (232) ) AT. CE MEDICINE AND N82-2898U BIOLOGY: A CONTINUING BIBLIOGRAPHY WITH INDEXES (SUPPLEMENT 232) (National Aeronautics and Space Administration) 137 p Unclas Hc <7.QQ CSCL Ofa£ 00/52 25483 National Aeronautics and Space Administration Aerospace Medicine & Biology space Medicine & Biology Aero 9 Medicine & Biology Aerospao dicine & Biology Aerospace M ne & Biology AerosjatoiMedici Biology Aerospace Medicine & gy Aerospace Medicine & Biolo 3rospace Medicine & Biology / pace Medicine & Biology Aeros Medicine & Biology Aerospace cine & Biology Aerospace Med & Biology Aerospace Medicine < ACCESSION NUMBER RANGES Accession numbers cited in this Supplement fall within the following ranges. STAR (N-10000 Series) N82-16040 - N82-18118 IAA (A-10000 Series) A82-18840 - A82-22250 This bibliography was prepared by the NASA Scientific and Technical Information Facility operated for the National Aeronautics and Space Administration by PRC Government Information Systems. NASA SP-7011(232) AEROSPACE MEDICINE AND BIOLOGY A CONTINUING BIBLIOGRAPHY WITH INDEXES (Supplement 232) A selection of annotated references to unclassified reports and journal articles that were introduced into the NASA scientific and technical information sys- tem and announced in April 1982 in Scientific and Technical Aerospace Reports (STAR) International Aerospace Abstracts (IA A). Scientific and Technical Information Branch 1982 National Aeronautics and Space Administration Washington, DC NASA SP-7011 and its supplements are available from the National Technical Information Service (NTIS). Questions on the availability of the predecessor publications, Aerospace Medicine and Biology (Volumes I - XI) should be directed to NTIS. This supplement is available as NTISUB/123/093 from the National Technical Information Service (NTIS), Springfield, Virginia 22161 at the price of $7.00 domestic; $14.00 foreign. -
History of Microbiology: Spontaneous Generation Theory
HISTORY OF MICROBIOLOGY: SPONTANEOUS GENERATION THEORY Microbiology often has been defined as the study of organisms and agents too small to be seen clearly by the unaided eye—that is, the study of microorganisms. Because objects less than about one millimeter in diameter cannot be seen clearly and must be examined with a microscope, microbiology is concerned primarily with organisms and agents this small and smaller. Microbial World Microorganisms are everywhere. Almost every natural surface is colonized by microbes (including our skin). Some microorganisms can live quite happily in boiling hot springs, whereas others form complex microbial communities in frozen sea ice. Most microorganisms are harmless to humans. You swallow millions of microbes every day with no ill effects. In fact, we are dependent on microbes to help us digest our food and to protect our bodies from pathogens. Microbes also keep the biosphere running by carrying out essential functions such as decomposition of dead animals and plants. Microbes are the dominant form of life on planet Earth. More than half the biomass on Earth consists of microorganisms, whereas animals constitute only 15% of the mass of living organisms on Earth. This Microbiology course deals with • How and where they live • Their structure • How they derive food and energy • Functions of soil micro flora • Role in nutrient transformation • Relation with plant • Importance in Industries The microorganisms can be divided into two distinct groups based on the nucleus structure: Prokaryotes – The organism lacking true nucleus (membrane enclosed chromosome and nucleolus) and other organelles like mitochondria, golgi body, entoplasmic reticulum etc. are referred as Prokaryotes. -
A. Calvin Cycle Discussion on Biology-Online.Org's Forum
Cordova's Finding: Affirming NSF's Definition of Francis K. Fong's Discovery of Margerum's Work of Fiction that Begot the Calvin Cycle and its Z scheme A. Calvin Cycle Discussion on Biology-Online.Org's Forum This post complements NSFfunding.com's Website on Calvin cycle, the dark reactions in photosynthesis. There is an interesting discussion on biology-online.org/biology-forum under the title, "the Calvin cycle???help please." First, the universally accepted interpretation of the Calvin cycle is described: "NADPH is actually electron provided and made blablabla, not hydrogen. And last, but not least this triose called glyceraldehyde phosphate is primarily recycled, that's why is it called 'The Calvin CYCLE,' and why it can work all the time - Just a minor part is transformed to hexose (primarily fructose), the rest has nothing to do with the Calvin cycle." Then, Biology-Online.Org's discussion departs from the accepted interpretation, in that Melvin Calvin, to whom is attributed the Calvin cycle, or the dark reactions in photosynthesis, had nothing to do with the Calvin cycle. The reason is because Calvin and his group at Berkeley published, in their original papers, findings from their C-14 tracer experiments that the "triose called glyceraldehyde phosphate is NOT recycled." Calvin et al reported a carboxylation reaction in photosynthesis which is neither dark nor cyclic, but a photoreductive reaction. The CO2 assimilated from the air by the RuBP (ribulose bisphosphate) results in reductive splitting of the 6-C intermediate into one molecule of PGA (phosphoglycerate) and the other a triose, glyceraldehyde phosphate, which condenses to make glucose and, then, starch. -
Food Carbohydrate Chemistry Food Carbohydrate Chemistry
Food Carbohydrate Chemistry Food Food Carbohydrate Chemistry Carbohydrates are major components of foods. They account for more than 90 percent of the dry matter of fruits and vegetables and provide 70 to 80 percent Food Carbohydrate of human caloric intake worldwide so, from a quantitative perspective alone, they warrant the attention of food chemists. From the standpoint of food quality, carbohydrates are multifunctional. Sugars are the major source of sweetness, but in addition, carbohydrates provide flavor, color, and texture – desirable, Chemistry undesirable, and neutral – as well as having functional roles as thickeners, gelling agents, bodying agents, and stabilizers in foods. When it comes to nutrition, carbohydrates are often blamed for such health issues as obesity, diabetes, and dental caries. It should be realized that carbohydrates are, or should be, the principal source of energy in our diet and that good nutrition Ronald E. Wrolstad is based on the consumption of the appropriate carbohydrates, in the right amounts, and in balance with other nutrients. Food Carbohydrate Chemistry relates basic carbohydrate chemistry to the quality attributes and functional properties of foods. Structure and nomenclature Press of sugars and sugar derivatives are covered but limited to those compounds that exist naturally in foods or are used as food additives and food ingredients. Review and presentation of fundamental carbohydrate chemistry is minimal, with the assumption that readers have already taken general organic chemistry and general biochemistry. Chemical reactions focus on those that have an impact on food quality and occur under processing and storage conditions. How chemical and physical properties of sugars and polysaccharides affect the functional properties of foods is emphasized.