Second-Order Least Squares Estimation in Regression Models with Application to Measurement Error Problems
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Generalized Linear Models and Generalized Additive Models
00:34 Friday 27th February, 2015 Copyright ©Cosma Rohilla Shalizi; do not distribute without permission updates at http://www.stat.cmu.edu/~cshalizi/ADAfaEPoV/ Chapter 13 Generalized Linear Models and Generalized Additive Models [[TODO: Merge GLM/GAM and Logistic Regression chap- 13.1 Generalized Linear Models and Iterative Least Squares ters]] [[ATTN: Keep as separate Logistic regression is a particular instance of a broader kind of model, called a gener- chapter, or merge with logis- alized linear model (GLM). You are familiar, of course, from your regression class tic?]] with the idea of transforming the response variable, what we’ve been calling Y , and then predicting the transformed variable from X . This was not what we did in logis- tic regression. Rather, we transformed the conditional expected value, and made that a linear function of X . This seems odd, because it is odd, but it turns out to be useful. Let’s be specific. Our usual focus in regression modeling has been the condi- tional expectation function, r (x)=E[Y X = x]. In plain linear regression, we try | to approximate r (x) by β0 + x β. In logistic regression, r (x)=E[Y X = x] = · | Pr(Y = 1 X = x), and it is a transformation of r (x) which is linear. The usual nota- tion says | ⌘(x)=β0 + x β (13.1) · r (x) ⌘(x)=log (13.2) 1 r (x) − = g(r (x)) (13.3) defining the logistic link function by g(m)=log m/(1 m). The function ⌘(x) is called the linear predictor. − Now, the first impulse for estimating this model would be to apply the transfor- mation g to the response. -
Stochastic Process - Introduction
Stochastic Process - Introduction • Stochastic processes are processes that proceed randomly in time. • Rather than consider fixed random variables X, Y, etc. or even sequences of i.i.d random variables, we consider sequences X0, X1, X2, …. Where Xt represent some random quantity at time t. • In general, the value Xt might depend on the quantity Xt-1 at time t-1, or even the value Xs for other times s < t. • Example: simple random walk . week 2 1 Stochastic Process - Definition • A stochastic process is a family of time indexed random variables Xt where t belongs to an index set. Formal notation, { t : ∈ ItX } where I is an index set that is a subset of R. • Examples of index sets: 1) I = (-∞, ∞) or I = [0, ∞]. In this case Xt is a continuous time stochastic process. 2) I = {0, ±1, ±2, ….} or I = {0, 1, 2, …}. In this case Xt is a discrete time stochastic process. • We use uppercase letter {Xt } to describe the process. A time series, {xt } is a realization or sample function from a certain process. • We use information from a time series to estimate parameters and properties of process {Xt }. week 2 2 Probability Distribution of a Process • For any stochastic process with index set I, its probability distribution function is uniquely determined by its finite dimensional distributions. •The k dimensional distribution function of a process is defined by FXX x,..., ( 1 x,..., k ) = P( Xt ≤ 1 ,..., xt≤ X k) x t1 tk 1 k for anyt 1 ,..., t k ∈ I and any real numbers x1, …, xk . -
Ordinary Least Squares 1 Ordinary Least Squares
Ordinary least squares 1 Ordinary least squares In statistics, ordinary least squares (OLS) or linear least squares is a method for estimating the unknown parameters in a linear regression model. This method minimizes the sum of squared vertical distances between the observed responses in the dataset and the responses predicted by the linear approximation. The resulting estimator can be expressed by a simple formula, especially in the case of a single regressor on the right-hand side. The OLS estimator is consistent when the regressors are exogenous and there is no Okun's law in macroeconomics states that in an economy the GDP growth should multicollinearity, and optimal in the class of depend linearly on the changes in the unemployment rate. Here the ordinary least squares method is used to construct the regression line describing this law. linear unbiased estimators when the errors are homoscedastic and serially uncorrelated. Under these conditions, the method of OLS provides minimum-variance mean-unbiased estimation when the errors have finite variances. Under the additional assumption that the errors be normally distributed, OLS is the maximum likelihood estimator. OLS is used in economics (econometrics) and electrical engineering (control theory and signal processing), among many areas of application. Linear model Suppose the data consists of n observations { y , x } . Each observation includes a scalar response y and a i i i vector of predictors (or regressors) x . In a linear regression model the response variable is a linear function of the i regressors: where β is a p×1 vector of unknown parameters; ε 's are unobserved scalar random variables (errors) which account i for the discrepancy between the actually observed responses y and the "predicted outcomes" x′ β; and ′ denotes i i matrix transpose, so that x′ β is the dot product between the vectors x and β. -
Variance Function Regressions for Studying Inequality
Variance Function Regressions for Studying Inequality The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Western, Bruce and Deirdre Bloome. 2009. Variance function regressions for studying inequality. Working paper, Department of Sociology, Harvard University. Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:2645469 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Open Access Policy Articles, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#OAP Variance Function Regressions for Studying Inequality Bruce Western1 Deirdre Bloome Harvard University January 2009 1Department of Sociology, 33 Kirkland Street, Cambridge MA 02138. E-mail: [email protected]. This research was supported by a grant from the Russell Sage Foundation. Abstract Regression-based studies of inequality model only between-group differ- ences, yet often these differences are far exceeded by residual inequality. Residual inequality is usually attributed to measurement error or the in- fluence of unobserved characteristics. We present a regression that in- cludes covariates for both the mean and variance of a dependent variable. In this model, the residual variance is treated as a target for analysis. In analyses of inequality, the residual variance might be interpreted as mea- suring risk or insecurity. Variance function regressions are illustrated in an analysis of panel data on earnings among released prisoners in the Na- tional Longitudinal Survey of Youth. We extend the model to a decomposi- tion analysis, relating the change in inequality to compositional changes in the population and changes in coefficients for the mean and variance. -
Flexible Signal Denoising Via Flexible Empirical Bayes Shrinkage
Journal of Machine Learning Research 22 (2021) 1-28 Submitted 1/19; Revised 9/20; Published 5/21 Flexible Signal Denoising via Flexible Empirical Bayes Shrinkage Zhengrong Xing [email protected] Department of Statistics University of Chicago Chicago, IL 60637, USA Peter Carbonetto [email protected] Research Computing Center and Department of Human Genetics University of Chicago Chicago, IL 60637, USA Matthew Stephens [email protected] Department of Statistics and Department of Human Genetics University of Chicago Chicago, IL 60637, USA Editor: Edo Airoldi Abstract Signal denoising—also known as non-parametric regression—is often performed through shrinkage estima- tion in a transformed (e.g., wavelet) domain; shrinkage in the transformed domain corresponds to smoothing in the original domain. A key question in such applications is how much to shrink, or, equivalently, how much to smooth. Empirical Bayes shrinkage methods provide an attractive solution to this problem; they use the data to estimate a distribution of underlying “effects,” hence automatically select an appropriate amount of shrinkage. However, most existing implementations of empirical Bayes shrinkage are less flexible than they could be—both in their assumptions on the underlying distribution of effects, and in their ability to han- dle heteroskedasticity—which limits their signal denoising applications. Here we address this by adopting a particularly flexible, stable and computationally convenient empirical Bayes shrinkage method and apply- ing it to several signal denoising problems. These applications include smoothing of Poisson data and het- eroskedastic Gaussian data. We show through empirical comparisons that the results are competitive with other methods, including both simple thresholding rules and purpose-built empirical Bayes procedures. -
Variance Function Estimation in Multivariate Nonparametric Regression by T
Variance Function Estimation in Multivariate Nonparametric Regression by T. Tony Cai, Lie Wang University of Pennsylvania Michael Levine Purdue University Technical Report #06-09 Department of Statistics Purdue University West Lafayette, IN USA October 2006 Variance Function Estimation in Multivariate Nonparametric Regression T. Tony Cail, Michael Levine* Lie Wangl October 3, 2006 Abstract Variance function estimation in multivariate nonparametric regression is consid- ered and the minimax rate of convergence is established. Our work uses the approach that generalizes the one used in Munk et al (2005) for the constant variance case. As is the case when the number of dimensions d = 1, and very much contrary to the common practice, it is often not desirable to base the estimator of the variance func- tion on the residuals from an optimal estimator of the mean. Instead it is desirable to use estimators of the mean with minimal bias. Another important conclusion is that the first order difference-based estimator that achieves minimax rate of convergence in one-dimensional case does not do the same in the high dimensional case. Instead, the optimal order of differences depends on the number of dimensions. Keywords: Minimax estimation, nonparametric regression, variance estimation. AMS 2000 Subject Classification: Primary: 62G08, 62G20. Department of Statistics, The Wharton School, University of Pennsylvania, Philadelphia, PA 19104. The research of Tony Cai was supported in part by NSF Grant DMS-0306576. 'Corresponding author. Address: 250 N. University Street, Purdue University, West Lafayette, IN 47907. Email: [email protected]. Phone: 765-496-7571. Fax: 765-494-0558 1 Introduction We consider the multivariate nonparametric regression problem where yi E R, xi E S = [0, Ild C Rd while a, are iid random variables with zero mean and unit variance and have bounded absolute fourth moments: E lail 5 p4 < m. -
Variance Function Program
Variance Function Program Version 15.0 (for Windows XP and later) July 2018 W.A. Sadler 71B Middleton Road Christchurch 8041 New Zealand Ph: +64 3 343 3808 e-mail: [email protected] (formerly at Nuclear Medicine Department, Christchurch Hospital) Contents Page Variance Function Program 15.0 1 Windows Vista through Windows 10 Issues 1 Program Help 1 Gestures 1 Program Structure 2 Data Type 3 Automation 3 Program Data Area 3 User Preferences File 4 Auto-processing File 4 Graph Templates 4 Decimal Separator 4 Screen Settings 4 Scrolling through Summaries and Displays 4 The Variance Function 5 Variance Function Output Examples 8 Variance Stabilisation 11 Histogram, Error and Biological Variation Plots 12 Regression Analysis 13 Limit of Blank (LoB) and Limit of Detection (LoD) 14 Bland-Altman Analysis 14 Appendix A (Program Delivery) 16 Appendix B (Program Installation) 16 Appendix C (Program Removal) 16 Appendix D (Example Data, SD and Regression Files) 16 Appendix E (Auto-processing Example Files) 17 Appendix F (History) 17 Appendix G (Changes: Version 14.0 to Version 15.0) 18 Appendix H (Version 14.0 Bug Fixes) 19 References 20 Variance Function Program 15.0 1 Variance Function Program 15.0 The variance function (the relationship between variance and the mean) has several applications in statistical analysis of medical laboratory data (eg. Ref. 1), but the single most important use is probably the construction of (im)precision profile plots (2). This program (VFP.exe) was initially aimed at immunoassay data which exhibit relatively extreme variance relationships. It was based around the “standard” 3-parameter variance function, 2 J σ = (β1 + β2U) 2 where σ denotes variance, U denotes the mean, and β1, β2 and J are the parameters (3, 4). -
Examining Residuals
Stat 565 Examining Residuals Jan 14 2016 Charlotte Wickham stat565.cwick.co.nz So far... xt = mt + st + zt Variable Trend Seasonality Noise measured at time t Estimate and{ subtract off Should be left with this, stationary but probably has serial correlation Residuals in Corvallis temperature series Temp - loess smooth on day of year - loess smooth on date Your turn Now I have residuals, how could I check the variance doesn't change through time (i.e. is stationary)? Is the variance stationary? Same checks as for mean except using squared residuals or absolute value of residuals. Why? var(x) = 1/n ∑ ( x - μ)2 Converts a visual comparison of spread to a visual comparison of mean. Plot squared residuals against time qplot(date, residual^2, data = corv) + geom_smooth(method = "loess") Plot squared residuals against season qplot(yday, residual^2, data = corv) + geom_smooth(method = "loess", size = 1) Fitted values against residuals Looking for mean-variance relationship qplot(temp - residual, residual^2, data = corv) + geom_smooth(method = "loess", size = 1) Non-stationary variance Just like the mean you can attempt to remove the non-stationarity in variance. However, to remove non-stationary variance you divide by an estimate of the standard deviation. Your turn For the temperature series, serial dependence (a.k.a autocorrelation) means that today's residual is dependent on yesterday's residual. Any ideas of how we could check that? Is there autocorrelation in the residuals? > corv$residual_lag1 <- c(NA, corv$residual[-nrow(corv)]) > head(corv) . residual residual_lag1 . 1.5856663 NA xt-1 = lag 1 of xt . -0.4928295 1.5856663 . -
An Analysis of Random Design Linear Regression
An Analysis of Random Design Linear Regression Daniel Hsu1,2, Sham M. Kakade2, and Tong Zhang1 1Department of Statistics, Rutgers University 2Department of Statistics, Wharton School, University of Pennsylvania Abstract The random design setting for linear regression concerns estimators based on a random sam- ple of covariate/response pairs. This work gives explicit bounds on the prediction error for the ordinary least squares estimator and the ridge regression estimator under mild assumptions on the covariate/response distributions. In particular, this work provides sharp results on the \out-of-sample" prediction error, as opposed to the \in-sample" (fixed design) error. Our anal- ysis also explicitly reveals the effect of noise vs. modeling errors. The approach reveals a close connection to the more traditional fixed design setting, and our methods make use of recent ad- vances in concentration inequalities (for vectors and matrices). We also describe an application of our results to fast least squares computations. 1 Introduction In the random design setting for linear regression, one is given pairs (X1;Y1);:::; (Xn;Yn) of co- variates and responses, sampled from a population, where each Xi are random vectors and Yi 2 R. These pairs are hypothesized to have the linear relationship > Yi = Xi β + i for some linear map β, where the i are noise terms. The goal of estimation in this setting is to find coefficients β^ based on these (Xi;Yi) pairs such that the expected prediction error on a new > 2 draw (X; Y ) from the population, measured as E[(X β^ − Y ) ], is as small as possible. -
ROBUST LINEAR LEAST SQUARES REGRESSION 3 Bias Term R(F ∗) R(F (Reg)) Has the Order D/N of the Estimation Term (See [3, 6, 10] and References− Within)
The Annals of Statistics 2011, Vol. 39, No. 5, 2766–2794 DOI: 10.1214/11-AOS918 c Institute of Mathematical Statistics, 2011 ROBUST LINEAR LEAST SQUARES REGRESSION By Jean-Yves Audibert and Olivier Catoni Universit´eParis-Est and CNRS/Ecole´ Normale Sup´erieure/INRIA and CNRS/Ecole´ Normale Sup´erieure and INRIA We consider the problem of robustly predicting as well as the best linear combination of d given functions in least squares regres- sion, and variants of this problem including constraints on the pa- rameters of the linear combination. For the ridge estimator and the ordinary least squares estimator, and their variants, we provide new risk bounds of order d/n without logarithmic factor unlike some stan- dard results, where n is the size of the training data. We also provide a new estimator with better deviations in the presence of heavy-tailed noise. It is based on truncating differences of losses in a min–max framework and satisfies a d/n risk bound both in expectation and in deviations. The key common surprising factor of these results is the absence of exponential moment condition on the output distribution while achieving exponential deviations. All risk bounds are obtained through a PAC-Bayesian analysis on truncated differences of losses. Experimental results strongly back up our truncated min–max esti- mator. 1. Introduction. Our statistical task. Let Z1 = (X1,Y1),...,Zn = (Xn,Yn) be n 2 pairs of input–output and assume that each pair has been independently≥ drawn from the same unknown distribution P . Let denote the input space and let the output space be the set of real numbersX R, so that P is a proba- bility distribution on the product space , R. -
Testing for Heteroskedastic Mixture of Ordinary Least 5
TESTING FOR HETEROSKEDASTIC MIXTURE OF ORDINARY LEAST 5. SQUARES ERRORS Chamil W SENARATHNE1 Wei JIANGUO2 Abstract There is no procedure available in the existing literature to test for heteroskedastic mixture of distributions of residuals drawn from ordinary least squares regressions. This is the first paper that designs a simple test procedure for detecting heteroskedastic mixture of ordinary least squares residuals. The assumption that residuals must be drawn from a homoscedastic mixture of distributions is tested in addition to detecting heteroskedasticity. The test procedure has been designed to account for mixture of distributions properties of the regression residuals when the regressor is drawn with reference to an active market. To retain efficiency of the test, an unbiased maximum likelihood estimator for the true (population) variance was drawn from a log-normal normal family. The results show that there are significant disagreements between the heteroskedasticity detection results of the two auxiliary regression models due to the effect of heteroskedastic mixture of residual distributions. Forecasting exercise shows that there is a significant difference between the two auxiliary regression models in market level regressions than non-market level regressions that supports the new model proposed. Monte Carlo simulation results show significant improvements in the model performance for finite samples with less size distortion. The findings of this study encourage future scholars explore possibility of testing heteroskedastic mixture effect of residuals drawn from multiple regressions and test heteroskedastic mixture in other developed and emerging markets under different market conditions (e.g. crisis) to see the generalisatbility of the model. It also encourages developing other types of tests such as F-test that also suits data generating process. -
Bayesian Uncertainty Analysis for a Regression Model Versus Application of GUM Supplement 1 to the Least-Squares Estimate
Home Search Collections Journals About Contact us My IOPscience Bayesian uncertainty analysis for a regression model versus application of GUM Supplement 1 to the least-squares estimate This content has been downloaded from IOPscience. Please scroll down to see the full text. 2011 Metrologia 48 233 (http://iopscience.iop.org/0026-1394/48/5/001) View the table of contents for this issue, or go to the journal homepage for more Download details: IP Address: 129.6.222.157 This content was downloaded on 20/02/2014 at 14:34 Please note that terms and conditions apply. IOP PUBLISHING METROLOGIA Metrologia 48 (2011) 233–240 doi:10.1088/0026-1394/48/5/001 Bayesian uncertainty analysis for a regression model versus application of GUM Supplement 1 to the least-squares estimate Clemens Elster1 and Blaza Toman2 1 Physikalisch-Technische Bundesanstalt, Abbestrasse 2-12, 10587 Berlin, Germany 2 Statistical Engineering Division, Information Technology Laboratory, National Institute of Standards and Technology, US Department of Commerce, Gaithersburg, MD, USA Received 7 March 2011, in final form 5 May 2011 Published 16 June 2011 Online at stacks.iop.org/Met/48/233 Abstract Application of least-squares as, for instance, in curve fitting is an important tool of data analysis in metrology. It is tempting to employ the supplement 1 to the GUM (GUM-S1) to evaluate the uncertainty associated with the resulting parameter estimates, although doing so is beyond the specified scope of GUM-S1. We compare the result of such a procedure with a Bayesian uncertainty analysis of the corresponding regression model.