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Proceedings X-Meeting 2015 Proceedings X-Meeting 2015 Editor: AB3C December 4, 2015 ii Conference Program 1 Organizing Committee 1 2 Introduction 3 3 Abstracts 5 Poster Session 7 Education and Training 7 7 Meeting the Global Thirst for Bioinformatics Training Global Organisation of Bioinformatics Learning, Education and Training 8 Standardizing sequence analysis methods on the web: working on the Bioinformatics Platform at the Fiocruz-BA Alisson Fonseca, Artur Lopo, Luciano Silva Genes and Genomics 9 9 Comparative genomics of three species of the genus Echinococcus Lucas Luciano Maldonado, Juliana Assis, Flávio Marcos Gomes-Aráujo, Izinara Rosse, Natalia Macchiaroli, Marcela Cucher, Mara Rosenzvit, Guilherme Oliveira, Laura Kamenetzky 10 BIOMARKERS STUDY OF NEPHROTOXICITY CAUSED BY GENTAMICIN THROUGH GENE EXPRES- SION Marina Grossi Stellamaris Soares, Sarah Silva, Mariana Nunes, Leonardo Almeida, Anete Valente, Carlos Tagliati 11 Identification of small deletions within human exons in Asian and European genomes using trancriptome data. Gabriel Wajnberg, Nicole de Miranda Scherer, Carlos Gil Ferreira, Fabio Passetti 12 Characterization of pathogenicity islands of 15 genome of Corynebacterium pseudotuberculosis biovar equi Yan Patrick de Moraes Pantoja, Adonney Allan Oliveira Veras, Pablo Henrique Caracciolo Gomes de Sá, Vasco Azevedo, Adriana Ribeiro, Artur Silva, Rommel Ramos 13 Analysis of HPV regulatory elements by k-mer index approach Taina Raiol, Lucas Akayama, Luciana Montera 14 Maximum entropy: an effective strategy to discriminate anomalous regions in bacterial genomes Gesiele Barros-Carvalho, Marie-Anne Van Sluys, Fabrício Lopes 15 The complete mitochondrial genome of a brazilian carnivorous plant Utricularia reniformis (Lentibulariaceae): Insights into the evolution of an organellar genome of a specialized plant. Yani C A Diaz, Saura R Silva, Cristine G Menezes, Vitor F O Miranda, Todd P Michael, Alessandro M. Varani 16 OBO-RO Editor: Supporting development and integration of ontologies in the biomedical domain Ricardo Cacheta Waldemarin, Cléver Ricardo Guareis de Farias 17 THE DRAFT GENOME OF Fonsecaea multimorphosa CBS 980.96 Aniele C Ribas Leao, Vinicius Almir Weiss, Emanuel Maltempi de Souza, Vania A Vicente ACR Leao1, VA Weiss1, RR Gomes3, VA Vicente3, RT Raittz1, MZ Tadra-Sfeir, E Balsanelli, V Baura, MBR Steffens, EM Souza 18 COMPARISON OF BINNING SOFTWARES IN METAGENOMIC SEQUENCES FROM HUMAN GUT MI- CROBIAL José Pilan, Agnes Takeda, José Rybarczyk-Filho 19 SEQUENCING AND ANALYSIS OF Derxia lacustris HL12 Sheyla Trefflich, Vinícius Almir Weiss, Arnaldo Glogauer, Dieval Guizelini, Roberto Tadeu Raittz, Shih-Yi Sheu, Wei-Cheng Huang, Wen-Ming Chen, Michelle Zibetti Tadra-Sfeir, Helisson Faoro, Valter Baura, Emanuel Mal- tempi Souza 20 Challenges associated to the search of specific targets for drug development against Leishmania major Larissa Catharina Costa, Carlyle Lima, Ana Carolina Ramos Guimarães, Nicolas Carels iii 21 Assembly, Annotation and Comparative Analysis of Mitochondrial Genome of two Asian Cattle breeds: Guzerá and Gir Juliana Assis Geraldo, Izinara Rosse Maria Raquel Carvalho, Francislon Oliveira, Flávio Araújo, Marcos Viní- cius Silva, Guilherme Oliveira 22 The utility of whole-exome sequencing for genetic diagnosis of heterogeneous background disorders: an epilepsy and delayed psychomotor development case report Maíra Cristina Freire, Michele Pereira, Giovana Torrezan, Mariano Zalis, Elvis Mateo, Alessandro Ferreira 23 OPTICAL MAPPING TO DETECT MISASSEMBLIES IN GENOME OF CORYNEBACTERIUM PSEUDO- TUBERCULOSIS STRAIN 1002 Thiago Jesus Sousa, Diego Cesar Batista Mariano, Flavia Figueira Aburjaile, Flávia Souza Rocha, Felipe Luiz Pereira, Henrique Cesar Pereira Figueiredo, Artur Silva, Rommel Thiago Jucá Ramos, Vasco Azevedo 24 EVOLUTIONARY AND FUNCTIONAL GENOMICS OF PSEUDOGENES IN TRYPANOSOMATIDS Marcio silva, Marcos Catanho, Fernando Valín, Antonio Basilio Miranda 25 Identification of Non-homologous Isofunctional Enzymes (NISE) between Solanum lycopersicum and the phy- topathogens Botritys cinerea and Fusarium Oxyosporum Rangeline Silva, Leandro Pereira, Antonio Miranda 26 Comparative genomics of probiotic yeasts: Saccharomyces cerevisiae var. boulardii and S. cerevisiae UFMG A-905. Thiago Mafra Batista, Rennan Garcias Moreira, Ieso de Miranda Castro, Carlos Augusto Rosa, Jacques Robert Nicoli, Gloria Regina Franco 27 Metabolic relationship of three strains of Lactococcus genre with an alternative carbon source Tessália Diniz Luerce-Saraiva, Carlos Augusto Almeida Diniz, Sara Heloisa Silva, Rodrigo Dias Oliveira Car- valho, Cassiana Severino de Souza, Marcela de Azevedo, Fillipe Luiz Rosa do Carmo, Pamela Mancha Agresti, Mariana Martins Drumond, Izabela Ibraim, Letícia Castro, Siomar de Castro Soares, Henrique Figueiredo, Vasco Azevedo, 28 In Silico analysis of Single Nucleotide Polymorphisms (SNPs) in human FANCA gene Abubaker Hamid Mohamed Salih, Ozaz Mohamed, Sami Salam, Hadeel Yousif, Mohamed Hassan 29 Genome assembly of Bothrops jararaca George Willian Condomitti Epamino, João Carlos Setubal, Inácio Junqueira Azevedo, Milton Yutaka Nishiyama Junior, Diego Dantas Almeida 30 Bioinformatics analysis of DNA alterations to identify mutations in evolved industrial yeast by evolutionary engeneering Sheila T. Nagamatsu, Leandro V. dos Santos, Gonçalo A. G. Pereira, Marcelo F. Carazzolle 31 Bacterial community profiling of human rectal cancers Andrew Maltez Thomas, Eliane Camargo de Jeses, Ademar Lopes, Samuel Aguiar Junior, Ariana Ferrari João Carlos Setubal, Diana Noronha Nunes, Emmanuel Dias-Neto 32 Identification and classification of microexon genes in a collection of genome annotations Bruno Souza, Murilo Amaral, João Carlos Setubal, Sergio Verjovski-Almeida 33 Missense mutations in candidate genes for reproductive disorders in a Gir bull identified through whole-genome sequencing Ana Emília de Paiva, Pablo Augusto de Souza Fonseca, Fernanda Caroline dos Santos, Izinara Rosse da Cruz, Guilherme Silva Moura 34 Using the Mean Shift clustering algorithm to predict Genomic Islands in bacteria Daniel Miranda de Brito, Thaís De Almeida Ratis Ramos, Vinicius Maracaja-Coutinho, Sávio Torres de Farias, Leonardo Vidal Batista, Thaís Gaudencio do Rêgo 35 Analysis of fecal bacterial diversity in howler monkeys (Alouatta) through metagenomics Raquel Franco, Arthur Berselli, Layla Martins, Andrew Thomaz, João Batista, Julio de Oliveira, Aline Silva, João Setubal iv 36 Computational methods for metagenomic data processing in the Metazoo Project Gianluca Major, Felipe Lima, Andrew Thomas, Leandro Lemos, Deyvid Amgarten, Deibs Barbosa, Calos Morais, Luciana Antunes, Aline Silva, João Setubal 37 Metagenomic Analysis of Rumen from Cattle Fed With Different Levels of Mate Extract (Ilex Paraguariensis A.St.-Hil.) Maurício Mudadu, Maurício Cantão, Larissa Gonçalves, Léa Chapaval, Teresa Alves, Wilson Malagó, Fabrício Correa, Marcio Rabelo, Daniel Cardoso 38 METHOD FOR IDENTIFYING BCR-ABL1-LIKE PEDIATRIC ACUTE LYMPHOBLASTIC LEUKEMIA Gabriel Lopes Centoducatte, André Bortolini Silveira, Silvia Regina Brandalise, José Andrés Yunes 39 State of the art of computational techniques applied for characterization and prediction of Transcription Factor Binding Sites (TFBS) Antonio Ferrão Neto, Luiz Paulo Moura Andrioli, Ariane Machado Lima 40 Understanding the evolution of pathogenicity using comparative genomics of the fungus responsible for the wilt disease in cacao Paulo Massanari Tokimatu, Juliana Jose, Gonçalo Amarante Guimarães Pereira, Leandro Costa Nacimento, Eddy Patricia Lopez Molano, Odalys Garcia Cabrera, Karina Yanagui, Marcelo Falsarella Carazzolle 41 Hybrid genome assembly of bacteria Burkholderia sacchari, a natural bioplastic producer Pedro Nepomuceno, Paulo Alexandrino, José Gomez, Luiziana Silva, André Fujita 42 Reconstructing the Whole Mitochondrial DNA (mtDNA) from Nuclear Genome Giovanni Marques de Castro, Adhemar Zerlotini Neto, Michel Eduardo Beleza Yamagishi 43 In silico characterization and mapping of alpha-pheromone of P. lutzii Juliana Alves Vieira, Waldeyr Mendes Cordeiro Silva, Maria Emília Machado Telles Walter, Ildinete Silva Pereira 44 Genes implicated in cancer encompass both ancient and very recently originated molecular functions Fernanda Stussi, Carlos Gonçalves, Miguel Ortega 45 Combined genomics, transcriptomics and proteomics strategies to improve annotation of transcribed and un- translated pseudogenes in Francisella noatunensis subsp. orientalis Felipe Pereira, Guilherme C Tavares, Siomar C Soares, Alex F. Carvalho, Frederico A. A. Costa, Fernanda A. Dorela, Vasco A. C. Azevedo, Carlos A. G. Leal, Henrique C. P. Figueiredo 46 Quantifying Heritability of Copy Number Variation for Genome Wide Association Studies Ana Claudia Ciconelle, Júlia Maria Pavan Soler 47 The use of Machine Learning to prediction of psychiatric disorders in children Walkiria Resende, Henrique Cursino Vieira, Ana Cecília Feio, Fabricio Martins Lopes, Helena Brentani 48 A broad overview of somatic variants in childhood leukemia: Prospection and validation of collaborative muta- tion with the mutant IL7r in genome-scale data Gisele Rodrigues, Lívia Campos, Priscila Zenatti, Elda Noronha, Maria Pombo-de-Oliveira, Silvia Brandalise, Francisco Lobo, José Yunes 49 Semi-Markov Conditional Random Fields for Gene Prediction Ígor Bonadio, Alan Durham 50 In silico investigation of the contribution of intergenic variations for a behavioral trait in Guzerá cattle Fernanda Caroline dos Santos, Pablo Augusto de Souza Fonseca, Maria de Fátima Ávila Pires, Izinara
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