Control of Fungal Pathogens
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Control of Fungal Pathogens Megan Dewdney PLP 5115c Control Measures oCultural controls oFungal diseases oFungicides oFungicide resistance oSpecific diseases Introduction o Best approach to disease control is to integrate approaches No one control measure is 100% effective o Practices such as crop rotation, planting time, (not so easy for perennial crops), site selection, modification of fertilizer regimes, micro-climate modification and sanitation (cultural controls) o Pesticides CULTURAL CONTROL Site and Cultivar/Rootstock Selection oSite history What was there in the past; was there a disease or nematode problem? oSoil type pH; drainage; water table oWhat cultivar do I plan to grow? Highly susceptible to Alternaria; perhaps change planting distance; less vigorous rootstock Nursery Trees oKeeping trees clean important as grove foundation oCovered nurseries started in Brazil to prevent Citrus Variegated Chlorosis spread oNow law in Florida and Brazil to prevent spread of HLB oImportant also to have reliable sources of budwood and rootstocks Nursery Trees cont. oKeep trees off ground oClean potting media oWhat other diseases are controlled in covered nurseries? Why? oAlternaria brown spot, citrus scab, citrus canker, black spot, and pseudocercospora fruit and leaf spot Poor Quality Nursery Trees Poor Quality Nursery Trees Poor Quality Nursery Trees Preventable Disease Problems Other Cultural Controls oNO OVERHEAD IRRIGATION oLeaf litter management is helpful for which diseases? Greasy spot; black spot; alternaria brown spot oHow? Discing; frequent irrigation to promote decomposition; mulch leaf litter; put compost accelerator on the leaf litter More Cultural Controls oReduce vigorous flush with fertilizer and water management oIncrease airflow within grove oRemove dead wood and brush piles oAdjust hedging practices oRemove declining trees oYounger groves for fresh production CHEMICAL CONTROL General Fungicide Information oOrganic versus inorganic Refers to chemical structure oInoganic chemicals Sulfur or metal ions Eg. Copper, tin, arsenic, mercury or cadmium Contact (protectants) oRemain on surface of plant oPotentially phytotoxic oExcellent for preventative use oPotential problems? Needs to be on the surface before an infection period leads to repeated applications Wash off – rain or irrigation UV degradation Systemics (eradicants, penetrants) oAbsorbed into plant oLocally systemic or translaminar Across a leaf oWeakly systemic Intermediate distance oXylem mobile unidirectional –which way? oPhloem mobile - bidirectional – why? Spectrum of Activity oMulti-site Often older contact fungicides Usually effective against many fungal classes oFew multi-site fungicides being developed Regulatory tests Toxicity (LD50) Environmental regulations (residuals and breakdown products) Spectrum of Activity oSingle-site Active at a sole point in essential processes Highly specific toxicity to fungi therefore generally safe to be absorbed into plants Often systemic Greater potential for resistance Copper oUsed since before the invention of Bordeaux mixture in 1885 (Millardet) oBroad spectrum protectant oNon-specific 2+ oMOA: Soluble Cu ions (Cu ) bind tightly to sufhydryl groups Cystein residues oPhytotoxicity reduced when made into water insoluble salts Carbamates oDiscovered 1930’s First group of fully synthetic fungicides oBroad spectrum oNon-specific inhibitors and are used as protectants oThe metal salts improve stability oPossible MOA: complex with Cu oAscomycetes/Oömycetes Ethylenebisdithiocarbamate (EBDC) oSecond generation carbamates Generally more effective than carbamates Broad spectrum Non-specific inhibitors and are used as protectants The metal salts improve stability oMOA: slow release of ethylene diisothiocarbamate oAscomycetes/Oömycetes Trichloromethylthiocarboximides oDiscovered early 1950’s Broad spectrum Non-specific inhibitors and are used as protectants oMOA: active group reacts with bases such as thiol groups – forms thiophosgene (highly reactive) Can also be formed during water hydrolysis Can cause phytotoxicity especially with oil oAscomycetes oNot registered for citrus Benzimidazoles oCommercialized in the 1970’s Considered a breakthrough Broad spectrum Systemic with eradicant activity Benomyl and thiophanate-methyl convert to carbendazime in aqueous conditions oAscomycetes and some Basidiomycete activity Benzimidazoles cont. oMOA: specific binding to fungal β- tubulin Prevents polymerization of microtubules Cells can no longer separate dividing nuclei Can have a cytokinin effect on plants oResistance! Sterol Biosynthesis Inhibitors - DMI oFirst discovered in 1968 oLarge class of fungicides Broad spectrum due to 30 DMI’s available Each has slightly different properties oActive against Ascomycetes and Basidiomycetes Except some Alternaria spp., Colletotrichum spp., Fusarium spp., Rhizoctonia spp. or Pyricularia oryzae Reasons unknown Sterol Biosynthesis Inhibitors – DMI cont. oMost contain an azole group (conazole) oSystemic fungicides oMOA: The biochemistry is exceptionally well understood Sterols required for membranes For most fungi it is ergosterol The aromatic nitrogen group disrupts a cytochrome P450 in the sterol biosynthe- tic pathway Sterol Biosynthesis Inhibitors – DMI cont oOnly essential feature of most DMI’s is the aromatic N oThe sterol precursors build-up and become incorporated into the membranes oNormal membrane functions become disrupted oResistance? Oömycete Specific Fungicides oPhenylamides Introduced in the late 1970’s Systemic with eradicant properties Stereo-isomers with activity with only the R-isomer MOA: specific for oömycetes Inhibits RNA polymerase to that synthesises ribosomal RNA Mechanism for oömycete specificity unknown Resistance? Oömycete Specific Fungicides cont. oFosetyl-al Discovered and developed early 1980s Systemic and is translocated to the roots from the leaves (unusual) Has some activity against other pathogens including bacteria MOA: not understood Possibly acting through phosphonic acid generated in plants or stimulation of plant defenses Resistance? Starting to hear rumors of resistance Oömycete Specific Fungicides cont. oCarboxylic acid amide fungicide (Mandipropamid) Developed in the 2000s Protectant to be applied as drench prior to disease onset oMOA: Specific for oömycetes Acts on cell wall and does not enter the cell Inhibits cellulose synthesis Resistance? National Center for Biotechnology Information. PubChem Compound Database; CID=11292824, https://pubchem.ncbi.nlm.nih.gov/compound/11292824 (accessed Sept. 16, 2017). Strobilurins (Quinone outside inhibitors; QoI) oIntroduced in the late 1990’s oDerived from secondary metabolites of Basidiomyctes oVery broad spectrum Ascomycetes, Basidiomycetes and Oömycetes oSystemic that has mild eradicant abilities Strobilurins (QoIs) cont. oMOA: Bind to cytochrome bc1 and inhibit mitochondrial respiration oPotent inhibitors of spore germination but don’t completely inhibit mycelial growth oAlternate respiration oResistance? www.cgm.cnrs-gif.fr/podospora/plus.html Succinate Dehydrogenase Inhibitors (SDHI) oDiscovered over 40 years ago First generation only had efficacy on Basidiomycetes New generation with wider efficacy introduced in 2003 oBroad spectrum Ascomycetes and Basidiomycetes Single site o fluxapyroxad boscalid fluopyram http://www.enlightcorp.com/suppliers/jiangsu_furun_ biochemical_technology_co_ltd-hz14fda9e.html http://www.google.com/patents/EP2612554A1?cl=en https://nl.wikipedia.org/wiki/Boscalid SDHIs cont. oDivided into 8 chemical classes and 18 compounds oMOA: Bind to mitochondrial complex II (succinate:quinone oxidoreductase) and inhibit mitochondrial respiration oPotent inhibitors of spore germination and mycelial growth oResistance? Fungicide Resistance oWhere the target population is no longer sensitive enough to a fungicide to obtain sufficient control oOccurs in response to the repeated use of a fungicide or related fungicides Field resistance Laboratory resistance oOften becomes apparent with sudden total failure of control Two types of Resistance Qualitative Quantitative Brent and Holloman, 2007 Qualitative Resistance oSudden and marked loss of control oPresence of two separate populations of resistant and sensitive pathogen isolates oUsually a stable form of resistance Lasts for decades Occasionally will gradually diminish over time but returns rapidly when fungicide is reapplied without precautions Quantitative Resistance oResistance appears less suddenly Decline in sensitivity of pathogen population and control can be observed oPopulation tends to revert to sensitive if the fungicide is less used or is alternated with other MOAs Types of Resistance oCross resistance resistant to different fungicides with the same MOA so generally same mechanism oMultiple resistance Two separate mechanisms of resistance to unrelated MOAs occasionally occurs in pathogens – multiple resistances Where does resistance come from? oA minute proportion of the population carries a mutant form of a gene before the use of a fungicide Confers resistance oWithout the fungicide, the mutation confers no advantage to growth or survival of the pathogen Could even be deleterious oMutation could disappear and reappear spontaneously several times Within population Initial frequency 1:1000 million Increased frequency of Resistant individual resistant strain in population Several Cycles Time passes Resistant population Resistance cont. oIf a fungicide is highly effective resistance will be more rapid Fewer sensitive strains