Diversity Patterns, Ecology and Biological Activities of Fungal Communities Associated with the Endemic Macroalgae Across the Antarctic Peninsula
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Candida Krusei: Biology, Epidemiology, Pathogenicity and Clinical Manifestations of an Emerging Pathogen
J. Med. Microbiol. - Vol. 41 (1994), 295-310 0 1994 The Pathological Society of Great Britain and Ireland REVIEW ARTICLE: CLINICAL MYCOLOGY Candida krusei: biology, epidemiology, pathogenicity and clinical manifestations of an emerging pathogen YUTHIKA H. SAMARANAYAKE and L. P. SAMARANAYAKE” Department of Pathology (Oral), Faculty of Medicine and Ord diology Unit, Faculty of Dentistry, University of Hong Kong, 34 Hospital Road, Hong Kong Summary. Early reports of Candida krusei in man describe the organism as a transient, infrequent isolate of minor clinical significance inhabiting the mucosal surfaces. More recently it has emerged as a notable pathogen with a spectrum of clinical manifestations such as fungaemia, endophthalmitis, arthritis and endocarditis, most of which usually occur in compromised patient groups in a nosocomial setting. The advent of human immunodeficiency virus infection and the widespread use of the newer triazole fluconazole to suppress fungal infections in these patients have contributed to a significant increase in C. krusei infection, particularly because of the high incidence of resistance of the yeast to this drug. Experimental studies have generally shown C. krusei to be less virulent than C. albicans in terms of its adherence to both epithelial and prosthetic surfaces, proteolytic potential and production of phospholipases. Furthermore, it would seem that C. krusei is significantlydifferent from other medically important Candida spp. in its structural and metabolic features, and exhibits different behaviour patterns towards host defences, adding credence to the belief that it should be re-assigned taxonomically. An increased awareness of the pathogenic potential of this yeast coupled with the newer molecular biological approaches to its study may facilitate the continued exploration of the epidemiology and pathogenesis of C. -
Idiopathic CD4 Lymphocytopenia: Spectrum of Opportunistic Infections, Malignancies, and Autoimmune Diseases
Published online: 2021-08-09 REVIEW ARTICLE Idiopathic CD4 Lymphocytopenia: Spectrum of opportunistic infections, malignancies, and autoimmune diseases Dina S. Ahmad, Mohammad Esmadi, William C. Steinmann Department of Internal Medicine, University of Missouri School of Medicine, Columbia, MO, USA Access this article online ABSTRACT Website: www.avicennajmed.com DOI: 10.4103/2231-0770.114121 Idiopathic CD4 lymphocytopenia (ICL) was first defined in 1992 by the US Centers for Disease Quick Response Code: Control and Prevention (CDC) as the repeated presence of a CD4+ T lymphocyte count of fewer than 300 cells per cubic millimeter or of less than 20% of total T cells with no evidence of human immunodeficiency virus (HIV) infection and no condition that might cause depressed CD4 counts. Most of our knowledge about ICL comes from scattered case reports. The aim of this study was to collect comprehensive data from the previously published cases to understand the characteristics of this rare condition. We searched the PubMed database and Science Direct for case reports since 1989 for Idiopathic CD4 lymphocytopenia cases. We found 258 cases diagnosed with ICL in 143 published papers. We collected data about age, sex, pathogens, site of infections, CD4 count, CD8 count, CD4:CD8 ratio, presence of HIV risk factors, malignancies, autoimmune diseases and whether the patients survived or died. The mean age at diagnosis of first opportunistic infection (or ICL if no opportunistic infection reported) was 40.7 ± 19.2 years (standard deviation), with a range of 1 to 85. One-sixty (62%) patients were males, 91 (35.2%) were females, and 7 (2.7%) patients were not identified whether males or females. -
Bitter Rot of Apples
Bitter Rot of Apples: Recent Changes in What We Know and Implications for Disease Management (A review of recent literature and perspectives on what we still need to learn) Compiled for a presentation at the Cumberland-Shenandoah Fruit Workers Conference in Winchester, VA, December 1-2, 2016 Dave Rosenberger, Plant Pathologist and Professor Emeritus Cornell’s Hudson Valley Lab, Highland, NY Apple growers, private consultants, and extension specialists have all noted that bitter rot is increasingly common and is causing sporadic but economically significant losses throughout the northeastern and north central apple growing regions of North America. Forty years ago, bitter rot was considered a “southern disease” and apples with bitter rot were rarely observed in northern production regions. Four factors have probably contributed to the increasing incidence of bitter rot in these regions. First, as a result of global warming, we have more days during summer with warm wetting events that are essential for initiating bitter rot infections and perhaps for increasing inoculum within orchards before the bitter rot pathogens move to apple fruit. Second, some new cultivars (e.g., Honeycrisp) are very susceptible to infection. Third, we are also growing more late-maturing cultivars such as Cripps Pink that may be picked in early November, and these cultivars may need additional fungicide sprays during September and/or early October if they are to be fully protected from bitter rot. Finally, mancozeb fungicides are very effective against Colletotrichum species, and the season-long use of mancozeb may have suppressed Colletotrichum populations in apple orchards prior to 1990 when the mancozeb labels were changed to prohibit applications during summer (i.e., within 77 days of harvest). -
Review of Oxepine-Pyrimidinone-Ketopiperazine Type Nonribosomal Peptides
H OH metabolites OH Review Review of Oxepine-Pyrimidinone-Ketopiperazine Type Nonribosomal Peptides Yaojie Guo , Jens C. Frisvad and Thomas O. Larsen * Department of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, Building 221, DK-2800 Kgs. Lyngby, Denmark; [email protected] (Y.G.); [email protected] (J.C.F.) * Correspondence: [email protected]; Tel.: +45-4525-2632 Received: 12 May 2020; Accepted: 8 June 2020; Published: 15 June 2020 Abstract: Recently, a rare class of nonribosomal peptides (NRPs) bearing a unique Oxepine-Pyrimidinone-Ketopiperazine (OPK) scaffold has been exclusively isolated from fungal sources. Based on the number of rings and conjugation systems on the backbone, it can be further categorized into three types A, B, and C. These compounds have been applied to various bioassays, and some have exhibited promising bioactivities like antifungal activity against phytopathogenic fungi and transcriptional activation on liver X receptor α. This review summarizes all the research related to natural OPK NRPs, including their biological sources, chemical structures, bioassays, as well as proposed biosynthetic mechanisms from 1988 to March 2020. The taxonomy of the fungal sources and chirality-related issues of these products are also discussed. Keywords: oxepine; nonribosomal peptides; bioactivity; biosynthesis; fungi; Aspergillus 1. Introduction Nonribosomal peptides (NRPs), mostly found in bacteria and fungi, are a class of peptidyl secondary metabolites biosynthesized by large modularly organized multienzyme complexes named nonribosomal peptide synthetases (NRPSs) [1]. These products are amongst the most structurally diverse secondary metabolites in nature; they exhibit a broad range of activities, which have been exploited in treatments such as the immunosuppressant cyclosporine A and the antibiotic daptomycin [2,3]. -
153.Full.Pdf
Copyright Ó 2010 by the Genetics Society of America DOI: 10.1534/genetics.109.113027 A Tetrad Analysis of the Basidiomycete Fungus Cryptococcus neoformans Alexander Idnurm Division of Cell Biology and Biophysics, School of Biological Sciences, University of Missouri-Kansas City, Kansas City, Missouri 64110 Manuscript received December 10, 2009 Accepted for publication February 9, 2010 ABSTRACT Cryptococcus neoformans is a basidiomycete fungus that is found worldwide and causes disease in humans and animal species. The fungus grows asexually as a budding yeast. Under laboratory conditions it is capable of sexual reproduction between two mating types. After cell fusion a dikaryotic filament develops, at the tip of which a basidium gives rise to four chains of basidiospores. Because the chains each comprise 10–30 spores, rather than single spores, the analysis of individual meiotic events has not been attempted in C. neoformans in the style of tetrad analyses performed in other fungal species. Here, the basidiospores from .100 basidia were micromanipulated and the resultant .2500 progeny analyzed for three genetic markers to understand the sexual process in this fungus, leading to four observations: (i) Marker seg- regation provides genetic evidence for a single meiotic event within the basidium followed by multiple rounds of mitosis. (ii) Using each basidium as an unordered tetrad, the ADE2 and URA5 genes are linked to their centromeres, consistent with adjacent genomic regions rich in repetitive elements predicted to comprise Cryptococcus centromeres. (iii) Lack of germination of basidiospores is attributed to aneuploidy, rather than dormancy. (iv) Analysis of basidiospores derived from single chains demonstrates that each chain can contain different genotypes. -
Studies of the Laboulbeniomycetes: Diversity, Evolution, and Patterns of Speciation
Studies of the Laboulbeniomycetes: Diversity, Evolution, and Patterns of Speciation The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:40049989 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA ! STUDIES OF THE LABOULBENIOMYCETES: DIVERSITY, EVOLUTION, AND PATTERNS OF SPECIATION A dissertation presented by DANNY HAELEWATERS to THE DEPARTMENT OF ORGANISMIC AND EVOLUTIONARY BIOLOGY in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the subject of Biology HARVARD UNIVERSITY Cambridge, Massachusetts April 2018 ! ! © 2018 – Danny Haelewaters All rights reserved. ! ! Dissertation Advisor: Professor Donald H. Pfister Danny Haelewaters STUDIES OF THE LABOULBENIOMYCETES: DIVERSITY, EVOLUTION, AND PATTERNS OF SPECIATION ABSTRACT CHAPTER 1: Laboulbeniales is one of the most morphologically and ecologically distinct orders of Ascomycota. These microscopic fungi are characterized by an ectoparasitic lifestyle on arthropods, determinate growth, lack of asexual state, high species richness and intractability to culture. DNA extraction and PCR amplification have proven difficult for multiple reasons. DNA isolation techniques and commercially available kits are tested enabling efficient and rapid genetic analysis of Laboulbeniales fungi. Success rates for the different techniques on different taxa are presented and discussed in the light of difficulties with micromanipulation, preservation techniques and negative results. CHAPTER 2: The class Laboulbeniomycetes comprises biotrophic parasites associated with arthropods and fungi. -
Identification of a Sorbicillinoid-Producing Aspergillus
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Archivio della ricerca - Università degli studi di Napoli Federico II Marine Biotechnology (2018) 20:502–511 https://doi.org/10.1007/s10126-018-9821-9 ORIGINAL ARTICLE Identification of a Sorbicillinoid-Producing Aspergillus Strain with Antimicrobial Activity Against Staphylococcus aureus:aNew Polyextremophilic Marine Fungus from Barents Sea Paulina Corral1,2 & Fortunato Palma Esposito1 & Pietro Tedesco1 & Angela Falco1 & Emiliana Tortorella1 & Luciana Tartaglione3 & Carmen Festa3 & Maria Valeria D’Auria3 & Giorgio Gnavi4 & Giovanna Cristina Varese4 & Donatella de Pascale1 Received: 18 October 2017 /Accepted: 26 March 2018 /Published online: 12 April 2018 # Springer Science+Business Media, LLC, part of Springer Nature 2018 Abstract The exploration of poorly studied areas of Earth can highly increase the possibility to discover novel bioactive compounds. In this study, the cultivable fraction of fungi and bacteria from Barents Sea sediments has been studied to mine new bioactive molecules with antibacterial activity against a panel of human pathogens. We isolated diverse strains of psychrophilic and halophilic bacteria and fungi from a collection of nine samples from sea sediment. Following a full bioassay-guided approach, we isolated a new promising polyextremophilic marine fungus strain 8Na, identified as Aspergillus protuberus MUT 3638, possessing the potential to produce antimicrobial agents. This fungus, isolated from cold seawater, was able to grow in a wide range of salinity, pH and temperatures. The growth conditions were optimised and scaled to fermentation, and its produced extract was subjected to chemical analysis. The active component was identified as bisvertinolone, a member of sorbicillonoid family that was found to display significant activity against Staphylococcus aureus with a minimum inhibitory concentration (MIC) of 30 μg/mL. -
AAA Vol 2 CD.Indb
Isolation and Identification of Cold-Adapted Fungi in the Fox Permafrost Tunnel, Alaska Mark P. Waldrop United States Geological Survey, Geologic Division, Menlo Park, CA, USA Richard White III United States Geological Survey, Geologic Division, Menlo Park, CA, USA Thomas A. Douglas Cold Regions Research and Engineering Laboratory, Fort Wainwright, AK, USA Abstract Permafrost microbiology is important for understanding biogeochemical processes, paleoecology, and life in extreme environments. Within the Fox, Alaska, permafrost tunnel, fungi grow on tunnel walls despite below freezing (-3°C) temperatures for the past 15,000 years. We collected fungal mycelia from ice, Pleistocene roots, and frozen loess. We identified the fungi by PCR, amplifying the ITS region of rRNA and searching for related sequences. The fungi within the tunnel were predominantly one genus, Geomyces, a cold-adapted fungi, and has likely “contaminated” the permafrost tunnel from outside. We were unable to obtain DNA or fungal isolates from the frozen loess, indicating fungal survival in permafrost soils can be strongly restricted. Geomyces can degrade complex carbon compounds, but we are unable to determine whether this is occurring. Results from this study suggest Geomyces may be an important colonizer species of other permafrost environments. Keywords: Fox tunnel; fungi; Geomyces; ice wedge; loess; permafrost. Introduction starts to melt and then sublimate. Therefore, when a hole is drilled, moisture is liberated, and fungal growth at these sites The permafrost tunnel near Fox, Alaska, was constructed should be possible. in the early 1960s to examine mining, tunneling, and Our research objective was to determine the identity of the construction techniques in permafrost. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Wood Staining Fungi Revealed Taxonomic Novelties in Pezizomycotina: New Order Superstratomycetales and New Species Cyanodermella Oleoligni
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 85: 107–124. Wood staining fungi revealed taxonomic novelties in Pezizomycotina: New order Superstratomycetales and new species Cyanodermella oleoligni E.J. van Nieuwenhuijzen1, J.M. Miadlikowska2*, J.A.M.P. Houbraken1*, O.C.G. Adan3, F.M. Lutzoni2, and R.A. Samson1 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Department of Biology, Duke University, Durham, NC 27708, USA; 3Department of Applied Physics, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven, The Netherlands *Correspondence: J.M. Miadlikowska, [email protected]; J.A.M.P. Houbraken, [email protected] Abstract: A culture-based survey of staining fungi on oil-treated timber after outdoor exposure in Australia and the Netherlands uncovered new taxa in Pezizomycotina. Their taxonomic novelty was confirmed by phylogenetic analyses of multi-locus sequences (ITS, nrSSU, nrLSU, mitSSU, RPB1, RPB2, and EF-1α) using multiple reference data sets. These previously unknown taxa are recognised as part of a new order (Superstratomycetales) potentially closely related to Trypetheliales (Dothideomycetes), and as a new species of Cyanodermella, C. oleoligni in Stictidaceae (Ostropales) part of the mostly lichenised class Lecanoromycetes. Within Superstratomycetales a single genus named Superstratomyces with three putative species: S. flavomucosus, S. atroviridis, and S. albomucosus are formally described. Monophyly of each circumscribed Superstratomyces species was highly supported and the intraspecific genetic variation was substantially lower than interspecific differences detected among species based on the ITS, nrLSU, and EF-1α loci. Ribosomal loci for all members of Superstratomyces were noticeably different from all fungal sequences available in GenBank. -
Molecular Taxonomy of Galactomyces Spp. and Dipodascus Capitatus
International Journal Of Medical Science And Clinical Inventions Volume 2 issue 12 2015 page no. 1485-1489 e-ISSN: 2348-991X p-ISSN: 2454-9576 Available Online At: http://valleyinternational.net/index.php/our-jou/ijmsci Molecular Taxonomy Of Galactomyces Spp. And Dipodascus Capitatus Associate With Dairy Based On Rdna Sequence Analysis In Iraq Zaidan Khlaif Imran* and Aya Kareem Jabbar Biology Department, All Women College of Science, Babylon University, Hilla, Iraq *Corresponded author: Zaidan Khlaif Imran E.mail:[email protected] ;[email protected] Abstract: Galactomyces spp is a telomorph of Geotrichum candidum (anamorph name). is used as a culture for cheese making and in some traditional fermented milks, few studies have assessed the genetic diversity of Galactomyces spp that exist in traditional cheese making facilities. The aim of this study isolation and molecular taxonomically treated of Galactomyces spp and other Candida spp. correlated with dairy products. The results showed that most dairy samples companioned with two species of Galactomyces: G.candidum and G.geotrichum , D. capitatus and four species of Candida spp.: Candida krusei , C. kefyr, C. utilis and C.glabrata .A total of 23 fungal isolates were diagnosed based on universal primers ITS1 / ITS4 to amplify the Internal transcribed region spacer. Four doubtful G.candidum isolates showed unique sizes of products PCR ranged between 380-400 bp. other Candida PCR product ranged 420-780bp. Sequence analysis identified a doubtful G.candidum into G. candidum and G.geotrichum with 97% similarities and with D. capitatus showed 93% similarities, few intraspecific variation were observed at 312-380bp in the amplicons from the primer pair ITS1-ITS4 commonly are from 380 to 400 bp for G. -
(12) Patent Application Publication (10) Pub. No.: US 2015/0094483 A1 Ness Et Al
US 2015 0094.483A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2015/0094483 A1 Ness et al. (43) Pub. Date: Apr. 2, 2015 (54) BIOTRANSFORMATION USING Publication Classification GENETICALLY MODIFIED CANDDA (51) Int. Cl. (71) Applicants: Jon E. Ness, Redwood City, CA (US); CI2P 7/64 (2006.01) Jeremy Minshull, Palo Alto, CA (US) CIIC3/00 (2006.01) CI2N 5/8 (2006.01) (72) Inventors: Jon E. Ness, Redwood City, CA (US); (52) U.S. Cl. Jeremy Minshull, Palo Alto, CA (US) CPC ............. CI2P 7/6409 (2013.01); CI2N 15/815 (2013.01): CI IC3/006 (2013.01) (21) Appl. No.: 14/084.230 USPC ....................... 554/219; 435/254.22:554/213 (22) Filed: Nov. 19, 2013 Related U.S. Application Data (57) ABSTRACT (60) Division of application No. 12,775,306, filed O May A substantially pure Candida host cell is provided for the 6, 2010, now Pat. No. 8,597,923, which is a continu biotransformation of a substrate to a product wherein the host ation-in-part of application No. 12/436,729, filed on cell is characterized by a first genetic modification class that May 6, 2009, now Pat. No. 8,158,391. comprises one or more genetic modifications that collectively (60) Provisional application No. 61/176,064, filed on May or individually disrupt at least one alcohol dehydrogenase 6, 2009. gene in the Substantially pure Candida host cell. Patent Application Publication Apr. 2, 2015 Sheet 1 of 28 US 201S/0094.483 A1 Fatty Acid rt-NS Fatty Acid Fatty Acid CYP52A Type P450 s COAOxidase (HO-Fatty Acid CB-unsaturated fatty acyl CoA Fatty Alcohol Oxidase CYP52A Type P450 Hydratase OCH-Fatty Acid 8-hydroxy fatty-acyl CoA Dehydrogenase CYP32A Type P450 Dehydrogenase HOOC-Fatty Acid BOXO fatty-acyl CoA Thiolase Fatty-acyl CoA+ Acetyl CoA Patent Application Publication Apr.