AIMS@JCU Outputs 2004 onwards

Abdul Wahab MA; de Nys R; Whalan SW (2012) Closing the lifecycle for the sustainable aquaculture of the bath sponge Coscinoderma matthewsi. Aquaculture, 324-325. pp. 281-289 http://eprints.jcu.edu.au/22035 Adams VM; Pressey RL; Stoeckl NE (2012) Estimating land and conservation management costs: the first step in designing a stewardship program for the Northern Territory. Biological Conservation, 148 (1). pp. 44-53 http://eprints.jcu.edu.au/20245 Andutta FP; Kingsford MJ; Wolanski E (2012) 'Sticky water' enables the retention of larvae in a reef mosaic. Estuarine, Coastal and Shelf Science , 101. pp. 54-63 http://eprints.jcu.edu.au/22906 Angell AR; Pirozzi I; de Nys R; Paul N (2012) Feeding preferences and the nutritional value of tropical algae for the abalone Haliotis asinina. PLoS ONE, 7 (6). pp. 1-10 http://eprints.jcu.edu.au/22050 Athauda SB; Anderson TA; de Nys R (2012) Effect of rearing water temperature on protandrous sex inversion in cultured Asian Seabass (Lates calcarifer). General and Comparative Endocrinology, 175 (3). pp. 416-423 http://eprints.jcu.edu.au/20838 Baird AH; Campbell SJ; Fadli N; Hoey AS; Rudi E (2012) The shallow water hard corals of Pulau Weh, Aceh Province, Indonesia. Aquaculture, Aquarium, Conservation and Legislation, 5 (1). pp. 23-28 http://eprints.jcu.edu.au/22743 Bannister RJ; Battershill CN; de Nys R (2012) Suspended sediment grain size and mineralogy across the continental shelf of the Great Barrier Reef: impacts on the physiology of a coral reef sponge. Continental Shelf Research, 32. pp. 86-95 http://eprints.jcu.edu.au/22051 Barnes LM; Bellwood DR; Sheaves MJ; Tanner JK (2012) The use of clear-water non-estuarine mangroves by reef fishes on the Great Barrier Reef. Marine Biology, 159 (1). pp. 211-220 http://eprints.jcu.edu.au/19651 Bass AM; Bird MI; Munksgaard NC; Wurster CM (2012) ISO-CADICA: isotopic - continuous, automated dissolved inorganic carbon analyser. Rapid Communications in Mass Spectrometry, 26 (6). pp. 639-644 http://eprints.jcu.edu.au/21547 Beeden R; Maynard JA; Marshall PA; Heron SF; Willis BL (2012) A framework for responding to coral disease outbreaks that facilitates adaptive management. Environmental Management, 49 (1). pp. 1-13 http://eprints.jcu.edu.au/20191 Bellwood DR; Hoey AS; Hughes TP (2012) Human activity selectively impacts the ecosystem roles of parrotfishes on coral reefs. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1733). pp. 1621-1629 http://eprints.jcu.edu.au/19586 Berumen ML; Trip EDL; Pratchett MS; Choat JH (2012) Differences in demographic traits of four butterflyfish species between two reefs of the Great Barrier Reef separated by 1,200 km. Coral Reefs, 31 (1). pp. 169-177 http://eprints.jcu.edu.au/20196 Bird MI; Ascough PL (2012) Isotopes in pyrogenic carbon: a review. Organic Geochemistry, 42 (12). pp. 1529-1539 http://eprints.jcu.edu.au/14961 Bird MI; Wurster CM; De Paula Silva PH; Paul N; de Nys R (2012) Algal biochar: effects and applications. GCB Bioenergy, 4 (1). pp. 61-69 http://eprints.jcu.edu.au/18985 Bonaldo RM; Welsh JQ; Bellwood DR (2012) Spatial and temporal variation in coral predation by parrotfishes on the GBR: evidence from an inshore reef. Coral Reefs, 31 (1). pp. 263-272 http://eprints.jcu.edu.au/19399 Botte E; Jerry DR; King SC; Smith-Keune CR; Negri A (2012) Effects of chlorpyrifos on cholinesterase activity and stress markers in the tropical reef fish Acanthochromis polyacanthus. Marine Pollution Bulletin, 65 (4-9). pp. 384-393 http://eprints.jcu.edu.au/20192 Camus T; Zeng C (2012) Reproductive performance, survival and development of nauplii and copepodites, sex ratio and adult life expectancy of the harpacticoid copepod, Euterpina acutifrons, fed different microalgal diets. Aquaculture Research, 43 (8). pp. 1159-1169 http://eprints.jcu.edu.au/20146 Carl C; Poole AJ; Sexton FL; Vucko MJ; Vucko MJ; Whalan SW; de Nys R; de Nys R (2012) Enhancing the settlement and attachment strength of pediveligers of Mytilus galloprovincialis by changing surface wettability and microtopography. Biofouling, 28 (2). pp. 175-186 http://eprints.jcu.edu.au/22052 Chin A; Tobin AJ; Simpfendorfer CA; Heupel MR (2012) Reef sharks and inshore habitats: patterns of occurrence and implications for vulnerability. Marine Ecology Progress Series, 460. pp. 115-125 http://eprints.jcu.edu.au/23244 Cinner JE; McClanahan TR; Macneil MA; Graham N; Daw TM; Mukminin A; Feary DA; Rabearisoa AL; Wamukota A; jiddawi n; Campbell SJ; Baird AH; Hartley FA; Hamed S; Lahari R; Morove T; Kuange J (2012) Comanagement of coral reef social- ecological systems. Proceedings of the National Academy of Sciences of the United States of America, 109 (14). pp. 5219- 5222 http://eprints.jcu.edu.au/21700 Claydon JAB; McCormick MI; Jones GP (2012) Patterns of migration between feeding and spawning sites in a coral reef surgeonfish. Coral Reefs, 31 (1). pp. 77-87 http://eprints.jcu.edu.au/20234 Collier CJ; Waycott M; Ospina AG (2012) Responses of four Indo-West Pacific seagrass species to shading. Marine Pollution Bulletin, 65 (4-9). pp. 342-354 http://eprints.jcu.edu.au/18590 De Santis C; Gomes G; Jerry DR (2012) Abundance of myostatin gene transcripts and their correlation with muscle hypertrophy during the development of barramundi, Lates calcarifer. Comparative Biochemistry and Physiology-Part B: biochemistry & molecular biology, 163 (1). pp. 101-107 http://eprints.jcu.edu.au/23147 Devine BM; Munday PL; Jones GP (2012) Homing ability of adult cardinalfish is affected by elevated carbon dioxide. Oecologia, 168 (1). pp. 269-276 http://eprints.jcu.edu.au/19612 Domenici P; Allen B; McCormick MI; Munday PL (2012) Elevated carbon dioxide affects behavioural lateralization in a coral reef fish. Biology Letters, 8 (1). pp. 78-81 http://eprints.jcu.edu.au/19613 Donelson JM; Munday PL; McCormick MI; Pitcher CR (2012) Rapid transgenerational acclimation of a tropical reef fish to climate change. Nature Climate Change, 2. pp. 30-32 http://eprints.jcu.edu.au/20235 Edmunds rc; Smith-Keune CR; van Herwerden L; Fulton CJ; Jerry DR (2012) Exposing local adaptation: synergistic stressors elicit population-specific lactate dehydrogenase-B (ldh-b) expression profiles in Australian barramundi, Lates calcarifer. Aquatic Sciences, 74 (1). pp. 171-178 http://eprints.jcu.edu.au/17814 Ferrari MCO; McCormick MI; Munday PL; Meekan MG; Dixon DS; Lonnstedt OM; Chivers DP (2012) Effects of ocean acidification on visual risk assessment in coral reef fishes. Functional Ecology, 26 (3). pp. 553-558 http://eprints.jcu.edu.au/22447 Figueiredo J; Connolly SR (2012) Dispersal-mediated coexistence under recruitment limitation and displacement competition. Ecological Modelling, 243. pp. 133-142 http://eprints.jcu.edu.au/22330 Figueiredo J; Baird AH; Cohen MF; Flot J-F; Kamiki TM; Meziane T; Tsuchyia M; Yamasaki H (2012) Ontogenetic change in the lipid and fatty acid composition of scleractinian coral larvae. Coral Reefs, pp. 613-619 http://eprints.jcu.edu.au/19726 Fitridge I; Dempster T; Guenther J; de Nys R (2012) The impact and control of biofouling in marine aquaculture: a review. Biofouling, 28 (7). pp. 649-669 http://eprints.jcu.edu.au/22250 Foster R; Bridge TCL; Bongaerts P (2012) The first record of Hippocampus denise (Syngnathidae) from Australia. Aqua: International Journal of Ichthyology, 18 (1). pp. 55-57 http://eprints.jcu.edu.au/22878 Guest JR; Baird AH; Maynard JA; Muttaqin E; Edwards A; Campbell SJ; Yewdall K; Affendi YA; Chou LM (2012) Contrasting Patterns of Coral Bleaching Susceptibility in 2010 Suggest an Adaptive Response to Thermal Stress. PLoS ONE, 7 (3). p. e33353 http://eprints.jcu.edu.au/22483 Guest JR; Baird AH; Goh BPL; Chou LM (2012) Sexual systems in scleractinian corals: an unusual pattern in the reef-building species Diploastrea heliopora. Coral Reefs, 31 (3). pp. 705-713 http://eprints.jcu.edu.au/22482 Harry AV; Morgan JAT; Ovenden JR; Tobin AJ; Welch DJ; Simpfendorfer CA (2012) Comparison of the reproductive ecology of two sympatric blacktip sharks (Carcharhinus limbatus and Carcharhinus tilstoni) off north-eastern Australia with species identification inferred from vertebral counts. Journal of Fish Biology, pp. 1-9 http://eprints.jcu.edu.au/23248 Hayakijkosol O; Owens L (2012) B2 or not B2: RNA interference reduces Macrobrachium rosenbergii nodavirus replication in redclaw crayfish (Cherax quadricarinatus). Aquaculture, 326-329. pp. 40-45 http://eprints.jcu.edu.au/20036 Heupel MR; Simpfendorfer CA; Olsen EM; Moland E (2012) Consistent movement traits indicative of innate behavior in neonate sharks. Journal of Experimental Marine Biology and Ecology, 432-433. pp. 131-137 http://eprints.jcu.edu.au/23250 Higgins V; Dibden JL; Cocklin CR (2012) Market instruments and the neoliberalisation of land management in rural Australia. Geoforum, 43 (3). pp. 377-386 http://eprints.jcu.edu.au/15723 Hughes TP; Baird AH; Dinsdale EA; Moltschaniwskyj N; Pratchett MS; Tanner JE; Willis BL (2012) Assembly Rules of Reef Corals Are Flexible along a Steep Climatic Gradient. Current Biology, 22 (8). pp. 736-741 http://eprints.jcu.edu.au/22509 Jerry DR; Kvingedal R; Lind CE; Evans BS; Taylor JJU; Safari AE (2012) Donor-oyster derived heritability estimates and the effect of genotype × environment interaction on the production of pearl quality traits in the silver-lip pearl oyster, Pinctada maxima. Aquaculture, 338-341. pp. 66-71 http://eprints.jcu.edu.au/23144 Kerry JT; Bellwood DR (2012) The effect of coral morphology on shelter selection by coral reef fishes. Coral Reefs, 31 (2). pp. 415-424 http://eprints.jcu.edu.au/20131 Knip DM; Heupel MR; Simpfendorfer CA (2012) Habitat use and spatial segregation of adult spottail sharks Carcharhinus sorrah in tropical nearshore waters. Journal of Fish Biology, 80 (4). pp. 767-784 http://eprints.jcu.edu.au/22153 Knip DM; Heupel MR; Simpfendorfer CA (2012) Evaluating marine protected areas for the conservation of tropical coastal sharks. Biological Conservation, 148 (1). pp. 200-209 http://eprints.jcu.edu.au/22151 Knip DM; Heupel MR; Simpfendorfer CA (2012) To roam or to home: site fidelity in a tropical coastal shark. Marine Biology, 159 (8). pp. 1647-1657 http://eprints.jcu.edu.au/23247 Knip DM; Heupel MR; Simpfendorfer CA (2012) Mortality rates for two shark species occupying a shared coastal environment. Fisheries Research, 125-126. pp. 184-189 http://eprints.jcu.edu.au/22646 Kockler J; Kanakaraju D; Glass BD; Oelgemoeller M (2012) Photochemical and photocatalytic degradation of diclofenac and amoxicillin using natural and simulated sunlight. Journal of Sustainability Science and Management, 7 (1). pp. 23-29 http://eprints.jcu.edu.au/21642 Kockler J; Oelgemoeller M; Robertson SG; Glass BD (2012) Photostability of sunscreens. Journal of Photochemistry and Photobiology C: Photochemistry Reviews, 13 (1). pp. 91-110 http://eprints.jcu.edu.au/21065 Lawton RJ; Cole AJ; Berumen ML; Pratchett MS (2012) Geographic variation in resource use by specialist versus generalist butterflyfishes. Ecography, 35 (6). pp. 566-576 http://eprints.jcu.edu.au/20794 Lawton RJ; Pratchett MS; Berumen ML (2012) The use of specialisation indices to predict vulnerability of coral-feeding butterflyfishes to environmental change. Oikos, 121 (2). pp. 191-200 http://eprints.jcu.edu.au/20793 Lewis SE; Schaffelke B; Shaw M; Bainbridge ZT; Rohde K; Kennedy K; Davis AM; Masters BL; Devlin M; Mueller J; Brodie JE (2012) Assessing the additive risks of PSII herbicide exposure to the Great Barrier Reef. Marine Pollution Bulletin, 65 (4-9). pp. 280-291 http://eprints.jcu.edu.au/20966 Lewis SE; Wust RAJ; Webster JM; Shields - Zhou GA; Renema W; Lough JM; Jacobsen G (2012) Development of an inshore fringing coral reef using textural, compositional and stratigraphic data from Magnetic Island, Great Barrier Reef, Australia. Marine Geology, 299-302. pp. 18-32 http://eprints.jcu.edu.au/20804 Lonnstedt OM; McCormick MI; Meekan MG; Ferrari MCO; Chivers DP (2012) Learn and live: predator experience and feeding history determines prey behaviour and survival. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1736). pp. 2091-2098 http://eprints.jcu.edu.au/22188 Lonnstedt OM; McCormick MI; Chivers DP (2012) Well-informed foraging: damage-released chemical cues of injured prey signal quality and size to predators. Oecologia, 168 (3). pp. 651-658 http://eprints.jcu.edu.au/20233 Manassa RP; McCormick MI (2012) Social learning and acquired recognition of a predator by a marine fish. Animal Cognition, 15 (4). pp. 559-565 http://eprints.jcu.edu.au/22450 McGinty EL; Zenger KR; Jones DB; Jerry DR (2012) Transcriptome analysis of biomineralisation-related genes within the pearl sac: host and donor oyster contribution. Marine Genomics, 5. pp. 27-33 http://eprints.jcu.edu.au/23140 McLeod IM; Parsons DM; Morrison MA; Le Port A; Taylor RB (2012) Factors affecting the recovery of soft-sediment mussel reefs in the Firth of Thames, New Zealand. Marine and Freshwater Research, 63 (1). pp. 78-83 http://eprints.jcu.edu.au/19669 Milione M; Southgate PC (2012) Reproductive cycle of the winged pearl oyster, Pteria penguin (Röding 1793) (Pteriidae) in north-eastern Australia. Invertebrate Reproduction and Development, 56 (2). pp. 164-171 http://eprints.jcu.edu.au/20777 Moore B; Simpfendorfer CA; Newman SJN; Stapley JM; Allsop Q; Sellin MJ; Welch DJ (2012) Spatial variation in life history reveals insight into connectivity and geographic population structure of a tropical estuarine teleost: kingthreadfin, Polydactylus macrochir. Fisheries Research, 125-126. pp. 214-224 http://eprints.jcu.edu.au/23246 Morgan JAT; Harry AV; Welch DJ; Street R; White J; Geraghty PT; Macbeth WG; Tobin AJ; Simpfendorfer CA; Ovenden JR (2012) Detection of interspecies hybridisation in Chondrichthyes: hybrids and hybrid offspring between Australian (Carcharhinus tilstoni) and common (C. limbatus) blacktip shark found in an Australian fishery. Conservation Genetics, 13 (2). pp. 455-463 http://eprints.jcu.edu.au/20003 Moya A; Huisman L; Ball EB; Hayward DC; Grasso LC; Chua C; Woo HN; Gattuso J-P; Foret S; Miller DJ (2012) Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO2-driven acidification during the initiation of calcification. Molecular Ecology, 21 (10). pp. 2440-2454 http://eprints.jcu.edu.au/23087 Murphy S; Saurel C; Morrissey A; Tobin J; Oelgemoeller M; Nolan K (2012) Photocatalytic activity of a porphyrin/TiO2 composite in the degradation of pharmaceuticals. Applied Catalysis B: Environmental, 119-120. pp. 156-165 http://eprints.jcu.edu.au/21604 Mustika PL; Birtles RA; Welters R; Marsh HD (2012) The economic influence of community-based dolphin watching on a local economy in a developing country: implications for conservation. Ecological Economics, 79. pp. 11-20 http://eprints.jcu.edu.au/22333 Nesa B; Baird AH; Harii S; Yakovleva IM; Hidaka M (2012) Algal symbionts increase DNA damage in coral planulae exposed to sunlight. Zoological Studies, 51 (1). pp. 12-17 http://eprints.jcu.edu.au/22510 Newton JR; De Santis C; Jerry DR (2012) The gene expression response of the catadromous perciform barramundi Lates calcarifer to an acute heat stress. Journal of Fish Biology, 81 (1). pp. 81-93 http://eprints.jcu.edu.au/23145 Norton SL; Wiley TR; Carlson JK; Frick AL; Poulakis GR; Simpfendorfer CA (2012) Designating critical habitat for juvenile endangered smalltooth sawfish in the United States. Marine and Coastal Fisheries: dynamics, management, and ecosystem science, 4 (1). pp. 473-480 http://eprints.jcu.edu.au/23238 Oelgemoeller M (2012) Highlights of Photochemical Reactions in Microflow Reactors. Chemical Engineering and Technology, 35 (7). pp. 1144-1152 http://eprints.jcu.edu.au/22058 Oelgemoeller M; Frank R; Lemmen P; Lenoir D; Lex J; Inoue Y (2012) Synthesis, structural characterization and photoisomerization of cyclic stilbenes. Tetrahedron, 68 (21). pp. 4048-4056 http://eprints.jcu.edu.au/21674 Olsen EM; Heupel MR; Simpfendorfer CA; Moland E (2012) Harvest selection on Atlantic cod behavioral traits: implications for spatial management. Ecology and Evolution, 2 (7). pp. 1549-1562 http://eprints.jcu.edu.au/23239 Price-Rees SJ; Congdon B; Krockenberger AK (2012) Size delays female senescence in a medium sized marsupial: the effects of maternal traits on annual fecundity in the northern brown bandicoot (Isoodon macrourus). Austral Ecology, 37 (3). pp. 313-322 http://eprints.jcu.edu.au/20121 Saiz G; Bird MI; Domingues TF; Schrodt F; Schwarz M; Feldpausch TR; Veenendaal E; Djagbletey G; Hien F; Compaore H; Diallo A; Lloyd JJ (2012) Variation in soil carbon stocks and their determinants across a precipitation gradient in West Africa. Global Change Biology, 18 (5). pp. 1670-1683 http://eprints.jcu.edu.au/22159 Saunders RJ; Paul N; de Nys R; de Nys R (2012) Sustainable sources of biomass for bioremediation of heavy metals in waste water derived from coal-fired power generation. PLoS ONE, 7 (5). pp. 1-8 http://eprints.jcu.edu.au/22054 Shvydkiv O; Limburg C; Nolan K; Oelgemoeller M (2012) Synthesis of Juglone (5-Hydroxy-1,4-Naphthoquinone) in a Falling Film Microreactor. Journal of Flow Chemistry, 2 (2). pp. 52-55 http://eprints.jcu.edu.au/22056 Simpfendorfer CA; Olsen EM; Heupel MR; Moland E (2012) Three-dimensional kernel utilization distributions improve estimates of space use in aquatic animals. Canadian Journal of Fisheries and Aquatic Sciences, 69 (3). pp. 565-572 http://eprints.jcu.edu.au/22152 Taylor AC; Cocklin CR; BROWN R (2012) Fostering environmental champions: a process to build their capacity to drive change. Journal of Environmental Management, 98. pp. 84-97 http://eprints.jcu.edu.au/19841 Trevathan J; Johnstone R; Chiffings T; Atkinson IM; Bergmann N; Read WW; Theiss S; Myers TS; Stevens TC (2012) SEMAT – the next generation of inexpensive marine environmental monitoring and measurement systems. Sensors, 12 (7). pp. 9711- 9748 http://eprints.jcu.edu.au/22086 Tziouveli V; Smith G (2012) A comparison of the fatty acid profiles of adult tissues, and newly hatched, fed and starved Lysmata amboinensis larvae. Aquaculture Research, 43 (4). pp. 577-587 http://eprints.jcu.edu.au/20126 van de Water JAJ; van Oppen MJH; Willis BL (2012) Absence of skeleton deposition in juveniles of the scleractinian coral Acropora millepora. Coral Reefs, Online Fir. p. 0 http://eprints.jcu.edu.au/22885 Van Der Meer MH; Gardiner MG; Hobbs JA; Jones GP; van Herwerden L (2012) Identification of seventeen microsatellite markers for conservation genetic studies of the endemic anemonefish, Amphiprion mccullochi. Conservation Genetics, http://eprints.jcu.edu.au/19587 Van Der Meer MH; Gardiner MG; Hobbs JA; Pratchett MS; van Herwerden L (2012) Identification of twenty one microsatellite loci for conservation genetic studies of the endemic butterflyfish Chaetodon tricinctus. Conservation Genetics, http://eprints.jcu.edu.au/19588 Vucko MJ; King PC; Poole AJ; Carl C; Jahedi MZ; de Nys R (2012) Cold spray metal embedment: an innovative antifouling technology. Biofouling, 28 (3). pp. 239-248 http://eprints.jcu.edu.au/22055 Webster JM; Beaman RJ; Puga-Bernabéu Á; Ludman DM; Renema W; Wust RAJ; George N; Reimer PR; Jacobsen G; Moss P (2012) Late Pleistocene history of turbidite sedimentation in a submarine canyon off the northern Great Barrier Reef, Australia. Palaeogeography, Palaeoclimatology, Palaeoecology, 331-332. pp. 75-89 http://eprints.jcu.edu.au/21671 Wei NV; Hsieh HJ; Dai C; Wallace CC; Baird AH; Chen CA (2012) Reproductive isolation among Acropora Species (Scleractinia: Acroporidae) in a marginal coral assemblage. Zoological Studies, 51 (1). pp. 85-92 http://eprints.jcu.edu.au/22511 Welsh JQ; Bellwood DR (2012) Spatial ecology of the steephead parrotfish (Chlorurus microrhinos): an evaluation using acoustic telemetry. Coral Reefs, 31 (1). pp. 55-65 http://eprints.jcu.edu.au/19668 Woolsey E; Bainbridge S; Kingsford MJ; Byrne MB (2012) Impacts of cyclone Hamish at One Tree Reef: integrating environmental and benthic habitat data. Marine Biology, 159 (4). pp. 793-803 http://eprints.jcu.edu.au/19733 Yang X; Wang J; Zhao L; Fan P; Wu X; Cheng Y; Zeng C (2012) Effects of elevated ambient histamine level on survival, growth, sexual maturity and tissue histamine accumulation of the mysis Neomysis awatschensis and Neomysis japonica Nakazawa. Aquaculture International, 20. pp. 347-356 http://eprints.jcu.edu.au/20120 Yates PM; Heupel MR; Tobin AJ; Simpfendorfer CA (2012) Diversity in young shark habitats provides the potential for portfolio effects. Marine Ecology Progress Series, 458. pp. 269-281 http://eprints.jcu.edu.au/23245 Yavorskyy A; Shvydkiv O; Limburg C; Nolan K; Delauré Y; Oelgemoeller M (2012) Photooxygenations in a bubble column reactor. Green Chemistry, 14. pp. 888-892 http://eprints.jcu.edu.au/21345 Young JW; Mckinnon AD; Ceccarelli DM; Brinkman RM; Bustamante RH; Cappo M; Dichmont C; Doherty P; Furnas MJ; Gledhill D; Griffiths S; Hutton T; Ridgway K; Smith D; Skewes T; Williams A; Richardson AJ (2012) Workshop on the ecosystem and fisheries of the Coral Sea: an Australian perspective on research and management. Reviews in Fish Biology and Fisheries, 22 (3). pp. 827-834 http://eprints.jcu.edu.au/20277 Zimmermann M; Leifeld J; Bird MI; Bird MI; Meir P (2012) Can composition and physical protection of soil organic matter explain soil respiration temperature sensitivity? Biogeochemistry, 107 (1-3). pp. 423- 436 http://eprints.jcu.edu.au/17758 Abbey E; Webster JM; Braga JC; Sugihara K; Wallace CC; Iryu Y; Potts D; Done TJ; Camoin G; Seard C (2011) Variation in deglacial coralgal assemblages and their paleoenvironmental significance: IODP Expedition 310, "Tahiti Sea Level". Global and Planetary Change, 76 (1). pp. 1-15 http://eprints.jcu.edu.au/21278 Abbey E; Webster JM; Beaman RJ (2011) Geomorphology of submerged reefs on the shelf edge of the Great Barrier Reef: the influence of oscillating Pleistocene sea-levels. Marine Geology, 288 (1-4). pp. 61-78 http://eprints.jcu.edu.au/19024 Abdul Wahab MA; de Nys R; Whalan SW (2011) Larval behaviour and settlement cues of a brooding coral reef sponge. Coral Reefs, 30 (2). pp. 451-460 http://eprints.jcu.edu.au/18786 Adams VM; Segan DB; Pressey RL (2011) How much does it cost to expand a protected area system? Some critical determining factors and ranges of costs for Queensland. PLoS ONE, 6. p. e25447 http://eprints.jcu.edu.au/20244 Adams VM; Mills M; Jupiter SJ; Pressey RL (2011) Improving social acceptability of marine protected area networks: a method for estimating opportunity costs to multiple gear types in both fished and currently unfished areas. Biological Conservation, 144. pp. 350-361 http://eprints.jcu.edu.au/20243 Aeby GS; Williams GJ; Franklin EC; Haapkyla AJ; Harvell CD; Neale SJ; Page CA; Raymundo L; Vargas-Ángel B; Willis BL; Work TM; Davy SK (2011) Growth anomalies on the coral genera Acropora and Porites are strongly associated with host density and human population size across the Indo-Pacific. PLoS ONE, 6 (2). pp. 1-9 http://eprints.jcu.edu.au/20175 Ainsworth TD; Wasmund K; Ukani L; Seneca F; Yellowlees D; Miller DJ; Leggat WP (2011) Defining the tipping point. A complex cellular life/death balance in corals in response to stress. Scientific Report, 1. pp. 1-9 http://eprints.jcu.edu.au/21209 Andutta FP; Ridd PV; Wolanski E (2011) Dynamics of hypersaline coastal waters in the Great Barrier Reef. Estuarine, Coastal and Shelf Science, 94 (4). pp. 299-305 http://eprints.jcu.edu.au/18230 Ascough PL; Bird MI; Francis SM; Thornton B; Midwood AJ; Scott AC; Apperley DC (2011) Variability in oxidative degradation of charcoal: Influence of production conditions and environmental exposure. Geochimica et Cosmochimica Acta, 75 (9). pp. 2361-2378 http://eprints.jcu.edu.au/21159 Ascough PL; Bird MI; Francis SM; Lebl T (2011) Alkali extraction of archaeological and geological charcoal: evidence for diagenetic degradation and formation of humic acids. Journal of Archaeological Science, 38 (1). pp. 69-78 http://eprints.jcu.edu.au/11903 Awruch CA; Simpfendorfer CA; Pankhurst NW (2011) Evaluation and use of a portable field kit for measuring whole-blood lactate in sharks. Marine and Freshwater Research, 62 (6). pp. 694-699 http://eprints.jcu.edu.au/18923 Awruch CA; Tobin AJ; Simpfendorfer CA; Welch DJ; Mapleston AJ; White J; Williams AJ; Stapley JM (2011) Evaluating catch and mitigating risk in a multispecies, tropical, inshore shark fishery within the Great Barrier Reef World Heritage Area. Marine and Freshwater Research, 62 (6). pp. 710-721 http://eprints.jcu.edu.au/18894 Baird AH; Blakeway DR; Hurley TJ; Stoddart JA (2011) Seasonality of coral reproduction in the Dampier Archipelago, northern Western Australia. Marine Biology, 158 (2). pp. 275-285 http://eprints.jcu.edu.au/18385 Ban NC; Adams VM; Pressey RL; Hicks J (2011) Promise and problems for estimating management costs of marine protected areas. Conservation Letters, 4 (3). pp. 241-252 http://eprints.jcu.edu.au/18041 Ban NC; Adams VM; Almany GR; Ban SS; Cinner JE; McCook LJ; Mills M; Pressey RL; White AT (2011) Designing, implementing and managing marine protected areas: emerging trends and opportunities for coral reef nations. Journal of Experimental Marine Biology and Ecology, 408 (1-2). pp. 21-31 http://eprints.jcu.edu.au/20305 Bannister RJ; Hoogenboom M; Anthony KRN; Battershill CN; Whalan SW; Webster N; de Nys R (2011) Incongruence between the distribution of a common coral reef sponge and photosynthesis. Marine Ecology Progress Series, 423. pp. 95- 100 http://eprints.jcu.edu.au/20208 Basah S; Barr C; Keane D; Nolan K; Morrissey A; Oelgemoeller M; Tobin J (2011) On the adsorption/photodegradation of amoxicillin in aqueous solutions by an integrated photocatalytic adsorbent (IPCA): experimental studies and kinetics analysis. 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PLoS ONE, 5 (8). pp. 1-11 http://eprints.jcu.edu.au/15648 Heupel MR; Williams AJ; Welch DJ; Davies CR; Penny AL; Kritzer JP; Marriott RJ; Mapstone BD (2010) Demographic characteristics of exploited tropical lutjanids: a comparative analysis. Fishery Bulletin, 108 (4). pp. 420-432 http://eprints.jcu.edu.au/15234 Heupel MR; Simpfendorfer CA; Fitzpatrick R (2010) Large–scale movement and reef fidelity of grey reef sharks. PLoS ONE, 5 (3). pp. 1-5 http://eprints.jcu.edu.au/15282 Heupel MR; Williams AJ; Welch DJ; Davies CR; Adams S; Carlos G; Mapstone BD (2010) Demography of a large exploited grouper, Plectropomus laevis: implications for fisheries management. Marine and Freshwater Research, 61 (2). pp. 184-195 http://eprints.jcu.edu.au/15210 Heupel MR; Yeiser BG; Collins AB; Ortega LA; Simpfendorfer CA (2010) Long-term presence and movement patterns of juvenile bull sharks, Carcharhinus leucas, in an estuarine river system. 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