Benchmark DFT Approach for Dissociation Energies of Chemically Important Bonds
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Benchmark DFT Approach for Dissociation Energies of Chemically Important Bonds By Naveen Kosar CIIT/FA15-R66-002/ATD PhD Thesis In Chemistry COMSATS University Islamabad Abbottabad Campus - Pakistan Spring, 2019 i COMSATS University Islamabad Benchmark DFT Approach for Dissociation Energies of Chemically Important Bonds A Thesis Presented to COMSATS University Islamabad, Abbottabad Campus In partial fulfillment of the requirement for the degree of PhD (Chemistry) By Naveen Kosar CIIT/FA15-R66-002/ATD Spring, 2019 ii Benchmark DFT Approach for Dissociation Energies of Chemically Important Bonds A Post Graduate Thesis submitted to the Department of Chemistry as partial fulfillment of the requirement for the award of Degree of Ph.D in Chemistry. Name Registration Number Naveen Kosar CIIT/FA15-R66-002/ATD Supervisor Dr. Tariq Mahmood Associate Professor Department of Chemistry COMSATS University Islamabad, Abbottabad Campus Co-Supervisor Dr. Khurshid Ayub Associate Professor Department of Chemistry COMSATS University Islamabad, Abbottabad Campus iii iv v vi vii DEDICATION I would like to dedicate my thesis to my beloved Parents, supportive Family and encouraging Teachers viii ACKNOWLEDGEMENTS “All the praises and thanks be to Allah, Who has guided us to this, and never could we have found guidance, were it not that Allah had guided us!” (Aayah No. 43, Surah Al-A’raf, Chapter No. 7, Holy Qur’an). My thousands Drood and Slam for Holy Prophet Mohammad (SAW) who emphasized the Umma to seek knowledge from the cradle to grave. First, I am thankful to my supervisor Dr. Tariq Mahmood and co-supervisor Dr. Khurshid Ayub, for their excellent supervision and guidance throughout my PhD research. They always pushed me forward and encouraged to have firm belief in myself. I extend my gratitude to Dr. Umar Rashid, Department of Chemistry, for his motivation and moral support throughout my research work. I am very thankful to Dr. Syeda Samina Ejaz, Department of Biochemistry, Islamia University Bahawalpur, for her valuable guidance and suggestion regarding my research work. I am very thankful to Dr. Mazhar A. Gilani, Department of Chemistry, COMSATS University Islamabad, Lahore Campus, for his valuable critics regarding the writing of publications were worthwhile. I acknowledge the Higher Education Commision, Pakistan and COMSATS University Islamabad, Abbottabad Campus for providing funding against my research project which really helped to carry out this research work. Second, my deepest gratitude goes to my entire family for their continuous encouragement, constant support, and unconditional love that gave me strength during PhD. Special thanks to my cousin, Farukh Shahzad Khan, for his help, guidance and suggestion to achieve this success. Bundle of thanks to my parents, Zahir Ahmad Khan and Razia Sultana, who raised me with a love of science and supported me in all my pursuits. Thanks, are extended to my grandmothers and aunts, for their prayers and wishes. I would also like to thank to my dear sister (Ayesha Zaheer) and brothers (Saud Ahmad Khan and Masroor Ahmed Khan) for encouragement and support. I would like to pay my gratitude to my Uncles (Sajjad Ahmad Khan, Sabir Ahmad Khan, Shakir Ahmad Khan, Abdur Rashid Ahmad Khan, Riaz Ali Khan, Hadayth Ullah Khan, Azhar Iqbal Khan, Anwar Iqbal Khan and Ishtiaq Khan) and their families for their support, wishes and prayers. Finally, I am very thankful to all my friends (Abida, Sidra, Saira, Humira, Amna, Aqsa, Romana and Muneeba) for their encouragement and support throughout this journey. Next, Lab colleagues (Riffat, Maria, Saira, Saima, Sehrish, Tanzeela, Rabia, Zainab, Fatima, Maria, Sajida, Saba, Saima, Ridda, Iram, Arenda, Muneeba, Hira, Sana, Kiran, Annum, Maryam, Nadia, Sidra, Mamoona, Saba, Yasir, Tabish, Hasnain, Faizan, Asghar, Akhtar, Sajjad, Arsalan, Zulqarnain, Asad and Bilal) at the department, COMSATS University Islamabad, Abbottabad Campus, for their valuable feedback, discussion, comments and support throughout my PhD research. Naveen Kosar CIIT/FA15-R66-002/ATD ix ABSTRACT Benchmark DFT Approach for Dissociation Energies of Chemically Important Bonds A very fascinating aspect in quantum chemical research is to acquire accurate and cost- effective method for the calculation of electronic as well as structural properties. The benchmarking is a famous approach where theoretical results from low-level calculations are compared with accurate high-level quantum chemical methods or experimental results. The current study focuses on performance evaluation of density functional theory methods for accurate measurement of bond dissociation energies. Bond dissociation energy (BDE) measurement has got noteworthy attention due to its importance in all areas of chemistry. Keeping in view the importance of bond dissociation energy (BDE), the current study is focused on the exploration of accurate and low cost DFT method for bond dissociation energy calculations of different chemically important bonds. The selected bonds include C−X (X = Cl and Br), C−Sn, C−CN, C−Mg and M−O2 bonds. Various functionals of DFT classes with a variety of basis sets are implemented for the calculation of BDE. The accuracy of a method is examined through different statistical tests including root mean square deviation (RMSD), standard deviation (SD), Pearson’s correlation (R) and mean absolute error (MAE). Theoretical results are compared with the already reported experimental BDE values of respective bonds. The method which has less deviation and error with a reasonable Pearson’s correlation is considered as the method of interest. For the BDE measurement of carbon halogen (C−X where X = Cl and Br) bond, 33 different density functionals (DFs) with four basis sets are used for sixteen halogen containing compounds. Two basis sets (6-31G(d) and 6-311G(d)) are selected from Pople basis sets and other two are selected from Dunning basis sets (aug-cc-pVDZ and aug-cc-pVTZ). Among all selected DFs, ꞷB97X-D shows the best performance with least deviations (RMSD, SD), error (MAE) and a significant Pearson's correlation (R) when compared with experimental data. Secondly, nineteen DFs from eight different DFT classes with four basis sets are selected for BDE calculation of the C−Sn bond of ten organotin compounds. Two basis sets containing pseudopotential basis sets (LANL2DZ and SDD) and other are selected from Karlsruhe basis sets (def2-SVP and x def2-TZVP). In this benchmark approach, BLYP-D3 functional of dispersion corrected GGA class with SDD basis set is observed as the best method for homolytic BDE calculation of C−Sn bond. Thirdly, for twelve organo-nitrile compounds thirty-one DFs with eight basis sets including Pople, Dunning and Karlsruhe basis sets are used. Thus, 6-31G(d), 6-31G(d,p), 6-311G(d,p), 6-31+G(d) and 6-311++G(d,p) basis sets are selected from Pople basis sets, aug-cc-pVDZ and aug-cc-pVTZ basis sets are selected from Dunning basis sets and def2-SVP basis set is selected from Karlsruhe basis sets. Overall, CAM-B3LYP functional of range separated hybrid GGA class with Pople’s 6- 311G(d,p) basis set provides the most accurate results for the BDE measurement of C−CN bond of nitrile compounds. Fourthly, twenty-nine DFs from thirteen DFT classes with four basis sets (Pople’s 6-31G(d) and 6-311G(d), Dunning’s aug-ccpVDZ and Karlsruhe’s def2-SVP basis sets) are implemented for BDE measurement of C−Mg bond of fifteen Grignard reagents. TPSS of meta-GGA class with 6-31G(d) basis set gave the accurate results. Finally, for BDE measurements of M−O2 bond in five metal complexes with dioxygen, fourteen DFs are chosen from seven DFT classes with two series of mixed basis sets. A combination of pseudopotential and Pople basis sets (LANL2DZ & 6-31G(d) and SDD & 6-31+G(d)) are used as a series of mixed basis sets. M06 functional with SDD & 6-31+G(d) gave outstanding results due to low deviations, error and the best R between experimental and theoretical data. xi PUBLICATIONS ASSOCIATED WITH THESIS 1. Naveen Kosar, Tariq Mahmood, Khurshid Ayub. (2017). Role of dispersion corrected hybrid GGA class in accurately calculating the bond dissociation energy of carbon halogen bond: A benchmark study. Journal of Molecular Structure, 1150, 447-458. (IF = 2.120) 2. Naveen Kosar, Khurshid Ayub, Tariq Mahmood. (2018). Accurate theoretical method for homolytic cleavage of C−Sn bond: A benchmark approach. Computational and Theoretical Chemistry, 1140, 134-144. (IF = 1.344) 3. Naveen Kosar, Khurshid Ayub, Mazhar Amjad Gilani, Tariq Mahmood. (2019). Benchmark DFT studies on C−CN homolytic cleavage and screening the substitution effect on bond dissociation energy. Journal of Molecular Modeling, 25, 47-60. (IF = 1.335) 4. Naveen Kosar, Khurshid Ayub, Mazhar A Gailani, Faheem Shah, Tariq Mahmood. Benchmark approach in search of cost-effective and accurate density functional for homolytic cleavage of C-Mg bond of Grignard reagent. International Journal of Quantum Chemistry, 2019, e26106 (IF = 2.263) xii TABLE OF CONTENTS 1 Introduction ................................................................................................ 1 1.1 Theoretical Chemistry ............................................................................ 2 1.1.1 Applications of Computational Chemistry ..................................... 3 1.1.2 Limitations ...................................................................................... 3 1.2 Computational versus Experimental Chemistry .................................... 4 1.3 Benchmark Study ..................................................................................