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Two-Photon Excitation, Fluorescence Microscopy, and Quantitative Measurement of Two-Photon Absorption Cross Sections
Portland State University PDXScholar Dissertations and Theses Dissertations and Theses Fall 12-1-2017 Two-Photon Excitation, Fluorescence Microscopy, and Quantitative Measurement of Two-Photon Absorption Cross Sections Fredrick Michael DeArmond Portland State University Let us know how access to this document benefits ouy . Follow this and additional works at: https://pdxscholar.library.pdx.edu/open_access_etds Part of the Physics Commons Recommended Citation DeArmond, Fredrick Michael, "Two-Photon Excitation, Fluorescence Microscopy, and Quantitative Measurement of Two-Photon Absorption Cross Sections" (2017). Dissertations and Theses. Paper 4036. 10.15760/etd.5920 This Dissertation is brought to you for free and open access. It has been accepted for inclusion in Dissertations and Theses by an authorized administrator of PDXScholar. For more information, please contact [email protected]. Two-Photon Excitation, Fluorescence Microscopy, and Quantitative Measurement of Two-Photon Absorption Cross Sections by Fredrick Michael DeArmond A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Applied Physics Dissertation Committee: Erik J. Sánchez, Chair Erik Bodegom Ralf Widenhorn Robert Strongin Portland State University 2017 ABSTRACT As optical microscopy techniques continue to improve, most notably the development of super-resolution optical microscopy which garnered the Nobel Prize in Chemistry in 2014, renewed emphasis has been placed on the development and use of fluorescence microscopy techniques. Of particular note is a renewed interest in multiphoton excitation due to a number of inherent properties of the technique including simplified optical filtering, increased sample penetration, and inherently confocal operation. With this renewed interest in multiphoton fluorescence microscopy, comes increased interest in and demand for robust non-linear fluorescent markers, and characterization of the associated tool set. -
How to Choose and Use Birding Optics
Blackburnian Warbler In association with Chestnut-sided Warbler CONTENTS Birding Optics 101 . 2 Optics Terms . 3 How Binoculars Work . 6 All About Spotting Scopes . 10 Top 10 Tips for Purchasing Your First Optics . 14 Adjusting Your Birding Optics . 18 Become a Birder in 5 Simple Steps . 22 Identifying Birds . 24 Three Tips for IDing Birds . 26 Traveling With Optics . 28 BIRDING OPTICS 101 No bird watcher’s toolkit is complete without optics, which means binoculars or a spotting scope . While you can bird without the magnifying power of optics, you won’t always get a satisfactory look at the birds, and will likely miss a few IDs . One barrier to entry for aspiring birders is the belief that quality optics are expensive . They can be, but they don’t have to be . Technological and manufacturing advances mean that today’s binoculars and spotting scopes are more affordable than ever, while still featuring high-end materials . So, where do you begin when selecting your first birding optics? In this guide, we discuss how binoculars and spotting scopes work, so you can select the best optics to enhance your birding experience . Once you’ve made your choice, we’ll teach you how to clean and care for your optics . You will learn to love them, because they are your gateway to discovering flocks’ worth of amazing birds . OPTICS DEFINED: WHAT YOU SEE IS WHAT YOU GET The vast majority of birders use binoculars—also known as “binos,” “binocs,” or “bins” for short . When you hear birders use the term “optics,” they are usually referring to binoculars . -
Second Harmonic Imaging Microscopy
170 Microsc Microanal 9(Suppl 2), 2003 DOI: 10.1017/S143192760344066X Copyright 2003 Microscopy Society of America Second Harmonic Imaging Microscopy Leslie M. Loew,* Andrew C. Millard,* Paul J. Campagnola,* William A. Mohler,* and Aaron Lewis‡ * Center for Biomedical Imaging Technology, University of Connecticut Health Center, Farmington, CT 06030-1507 USA ‡ Division of Applied Physics, Hebrew University of Jerusalem, Jerusalem 91904, Israel Second Harmonic Generation (SHG) has been developed in our laboratories as a high- resolution non-linear optical imaging microscopy (“SHIM”) for cellular membranes and intact tissues. SHG is a non-linear process that produces a frequency doubling of the intense laser field impinging on a material with a high second order susceptibility. It shares many of the advantageous features for microscopy of another more established non-linear optical technique: two-photon excited fluorescence (TPEF). Both are capable of optical sectioning to produce 3D images of thick specimens and both result in less photodamage to living tissue than confocal microscopy. SHG is complementary to TPEF in that it uses a different contrast mechanism and is most easily detected in the transmitted light optical path. It also does not arise via photon emission from molecular excited states, as do both 1- and 2-photon excited fluorescence. SHG of intrinsic highly ordered biological structures such as collagen has been known for some time but only recently has the full potential of high resolution 3D SHIM been demonstrated on live cells and tissues. For example, Figure 1 shows SHIM from microtubules in a living organism, C. elegans. The images were obtained from a transgenic nematode that expresses a ß-tubulin-green fluorescent protein fusion and Figure 1 also shows the TPEF image from this molecule for comparison. -
Fv1000 Fluoview
Confocal Laser Scanning Biological Microscope FV1000 FLUOVIEW FLUOVIEW—Always Evolving FLUOVIEW–—From Olympus is Open FLUOVIEW—More Advanced than Ever The Olympus FLUOVIEW FV1000 confocal laser scanning microscope delivers efficient and reliable performance together with the high resolution required for multi-dimensional observation of cell and tissue morphology, and precise molecular localization. The FV1000 incorporates the industry’s first dedicated laser light stimulation scanner to achieve simultaneous targeted laser stimulation and imaging for real-time visualization of rapid cell responses. The FV1000 also measures diffusion coefficients of intracellular molecules, quantifying molecular kinetics. Quite simply, the FLUOVIEW FV1000 represents a new plateau, bringing “imaging to analysis.” Olympus continues to drive forward the development of FLUOVIEW microscopes, using input from researchers to meet their evolving demands and bringing “imaging to analysis.” Quality Performance with Innovative Design FV10i 1 Imaging to Analysis ing up New Worlds From Imaging to Analysis FV1000 Advanced Deeper Imaging with High Resolution FV1000MPE 2 Advanced FLUOVIEW Systems Enhance the Power of Your Research Superb Optical Systems Set the Standard for Accuracy and Sensitivity. Two types of detectors deliver enhanced accuracy and sensitivity, and are paired with a new objective with low chromatic aberration, to deliver even better precision for colocalization analysis. These optical advances boost the overall system capabilities and raise performance to a new level. Imaging, Stimulation and Measurement— Advanced Analytical Methods for Quantification. Now equipped to measure the diffusion coefficients of intracellular molecules, for quantification of the dynamic interactions of molecules inside live cell. FLUOVIEW opens up new worlds of measurement. Evolving Systems Meet the Demands of Your Application. -
Aerospace Micro-Lesson
AIAA AEROSPACE M ICRO-LESSON Easily digestible Aerospace Principles revealed for K-12 Students and Educators. These lessons will be sent on a bi-weekly basis and allow grade-level focused learning. - AIAA STEM K-12 Committee. MAKE YOUR OWN TELESCOPE One usually thinks of telescopes as professionally-made precision instruments—and a good telescope certainly is. Larger telescopes even have their own buildings, called observatories. It is possible, however, to create one’s own telescope very easily with a pair of magnifying glasses. You do not even need a tube. Next Generation Science Standards (NGSS): * Discipline: Physical science. * Crosscutting Concept: Scale, proportion, and quantity. * Science & Engineering Practice: Constructing explanations and designing solutions. Common Core State Standards (CCSS): * Geometry: Modeling with geometry. GRADES K-2 NGSS: Waves and Their Applications in Technologies for Information Transfer: Plan and conduct investigations to determine the effect of placing objects made with different materials in the path of a beam of light. The basic part of a telescope is a magnifying glass. You can show the kids a magnifying glass and point out that it makes objects look larger if you look at them through it. You can point out that they need to hold the magnifying glass a certain distance from the object for them to see it clearly. When an object looks clear in a magnifying glass, we say that it is “in focus.” When it looks blurry, we say that it is “out of focus.” There are several stories about the invention of the telescope. One of them recounts that there was a Dutch eyeglass maker about 400 years ago named Hans Lippershey (pronounced in Dutch as “Lippers-hey” rather than “Lipper-shay”). -
Lecture 15 Optical Instruments
LECTURE 15 OPTICAL INSTRUMENTS Instructor: Kazumi Tolich Lecture 15 2 ¨ Reading chapter 27.1 to 27.6 ¤ Optical Instruments n Eyes n Cameras n Simple magnifiers n Compound microscopes n Telescopes ¤ Lens aberrations Quiz: 1 3 ¨ If your near point distance is �, how close can you stand to a mirror and still be able to focus on your (beautiful) image? Answer in terms of �, i.e., what is � in ��? Quiz: 15-1 answer 4 ¨ 0.5 � ¨ The near point, �, is the closest point to the eye that the lens is able to focus (~ 25 cm for normal eyes). ¨ If you are a distance 0.5 � in front of a mirror, your image is a distance 0.5 � behind the mirror. ¨ Therefore, you can clearly see your image if the distance from you to your image is �. ¨ The far point is the farthest point at which the eye can focus (∞ for normal eyes). Cameras 5 ¨ The camera lens moves closer to or farther away from the film in order to focus. ¨ The amount of light reaching the film is determined by shutter speed and the �-number: ./012 234567 > �-number = = 891:363; /. 1<3;6=;3 ? Quiz: 2 6 ¨ A camera’s �-number is reduced from 2.8 to 1.4. Does the light entering the camera (the exposure) increase, decrease, or remains the same, assuming the shutter speed is unchanged? A. Increase B. Decrease C. Remains the same Quiz: 15-2 answer 7 ¨ Increase ./012 234567 > ¨ �-number = = 891:363; /. 1<3;6=;3 ? ¨ Decreasing the �-number will increase the diameter. ¨ This will increase the area through which light enters and thus increases the exposure. -
The Microscope Parts And
The Microscope Parts and Use Name:_______________________ Period:______ Historians credit the invention of the compound microscope to the Dutch spectacle maker, Zacharias Janssen, around the year 1590. The compound microscope uses lenses and light to enlarge the image and is also called an optical or light microscope (vs./ an electron microscope). The simplest optical microscope is the magnifying glass and is good to about ten times (10X) magnification. The compound microscope has two systems of lenses for greater magnification, 1) the ocular, or eyepiece lens that one looks into and 2) the objective lens, or the lens closest to the object. Before purchasing or using a microscope, it is important to know the functions of each part. Eyepiece Lens: the lens at the top that you look through. They are usually 10X or 15X power. Tube: Connects the eyepiece to the objective lenses Arm: Supports the tube and connects it to the base. It is used along with the base to carry the microscope Base: The bottom of the microscope, used for support Illuminator: A steady light source (110 volts) used in place of a mirror. Stage: The flat platform where you place your slides. Stage clips hold the slides in place. Revolving Nosepiece or Turret: This is the part that holds two or more objective lenses and can be rotated to easily change power. Objective Lenses: Usually you will find 3 or 4 objective lenses on a microscope. They almost always consist of 4X, 10X, 40X and 100X powers. When coupled with a 10X (most common) eyepiece lens, we get total magnifications of 40X (4X times 10X), 100X , 400X and 1000X. -
Two-Photon Excitation Fluorescence Microscopy
P1: FhN/ftt P2: FhN July 10, 2000 11:18 Annual Reviews AR106-15 Annu. Rev. Biomed. Eng. 2000. 02:399–429 Copyright c 2000 by Annual Reviews. All rights reserved TWO-PHOTON EXCITATION FLUORESCENCE MICROSCOPY PeterT.C.So1,ChenY.Dong1, Barry R. Masters2, and Keith M. Berland3 1Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139; e-mail: [email protected] 2Department of Ophthalmology, University of Bern, Bern, Switzerland 3Department of Physics, Emory University, Atlanta, Georgia 30322 Key Words multiphoton, fluorescence spectroscopy, single molecule, functional imaging, tissue imaging ■ Abstract Two-photon fluorescence microscopy is one of the most important re- cent inventions in biological imaging. This technology enables noninvasive study of biological specimens in three dimensions with submicrometer resolution. Two-photon excitation of fluorophores results from the simultaneous absorption of two photons. This excitation process has a number of unique advantages, such as reduced specimen photodamage and enhanced penetration depth. It also produces higher-contrast im- ages and is a novel method to trigger localized photochemical reactions. Two-photon microscopy continues to find an increasing number of applications in biology and medicine. CONTENTS INTRODUCTION ................................................ 400 HISTORICAL REVIEW OF TWO-PHOTON MICROSCOPY TECHNOLOGY ...401 BASIC PRINCIPLES OF TWO-PHOTON MICROSCOPY ..................402 Physical Basis for Two-Photon Excitation ............................ -
STED Fluorescence Microscopy: a Method of Resolution Enhancement Submitted by David Biss and Jason Neiser
STED Fluorescence Microscopy: A method of resolution enhancement Submitted by David Biss and Jason Neiser Introduction relaxed vibrational level of the ground electronic state. The microscope excitation light generates If geometrical aberrations are minimized in an a transition in the fluorophore from level L0 to optical system, the smallest spot size attainable is L1, a high vibrational level of the first excited the diffraction limited spot size. Confocal state. From here, the molecule undergoes a fast microscopy was the first method to extend vibrational decay from L1 to L2, and eventually resolution beyond the Abbe resolution limit and fluoresces to L3 by spontaneous emission. it added axial resolution to the system. This form of microscopy images a portion of the sample being investigated onto a confocal pinhole at the detection plane of the system. Since the invention of confocal microscopy other methods have been devised to reach beyond the standard diffraction limit. Some of these methods are 4π microscopy, two photon microscopy, near-field microscopy, and more recently, STimulated Emission Depletion (STED) fluorescence microscopy. [1, 2, 3] STED fluorescence microscopy takes standard fluorescence microscopy and introduces a technique to reduce the emitted spot size. STED microscopy uses stimulated emission to deplete fluorophores before they fluoresce. If this depletion occurs at the edges of the excited sample area the spot size (and volume) of the fluorescence can be reduced beyond the Fig. 1 Energy level diagram of a dye molecule. A short diffraction limit. wavelength pulse excites the molecule and it may be relaxed by either fluorescing or by stimulated emission via the STED Theory pulse. -
Confocal Microscopy
Confocal microscopy Chapter in Handbook of Comprehensive Biophysics ( in press 2011) Elsevier Brad Amos MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 0QH UK e-mail [email protected] Gail McConnell University of Strathclyde , Centre for Biophotonics 161 Cathedral Street , Glasgow G4 0RE UK [email protected] Tony Wilson Dept. of Engineering Science, University of Oxford, Parks Road, Oxford, OX1 3PJ, UK. eMail: [email protected] 1 Introduction A confocal microscope is one in which the illumination is confined to a small volume in the specimen, the detection is confined to the same volume and the image is built up by scanning this volume over the specimen, either by moving the beam of light over the specimen or by displacing the specimen relative to a stationary beam. The chief advantage of this type of microscope is that it gives a greatly enhanced discrimination of depth relative to conventional microscopes. Commercial systems appeared in the 1980s and, despite their high cost, the world market for them is probably between 500 and 1000 instruments per annum, mainly because of their use in biomedical research in conjunction with fluorescent labelling methods. There are many books and review articles on this subject ( e.g. Pawley ( 2006) , Matsumoto( 2002), Wilson (1990) ). The purpose of this chapter is to provide an introduction to optical and engineering aspects that may be o f interest to biomedical users of confocal microscopy. Flying-spot Microscopes A confocal microscope is a special type of ‘flying spot’ microscope. Flying spot systems were developed in the 1950s by combining conventional microscopes with electronics from TV and military equipment. -
Imaging with Second-Harmonic Generation Nanoparticles
1 Imaging with Second-Harmonic Generation Nanoparticles Thesis by Chia-Lung Hsieh In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy California Institute of Technology Pasadena, California 2011 (Defended March 16, 2011) ii © 2011 Chia-Lung Hsieh All Rights Reserved iii Publications contained within this thesis: 1. C. L. Hsieh, R. Grange, Y. Pu, and D. Psaltis, "Three-dimensional harmonic holographic microcopy using nanoparticles as probes for cell imaging," Opt. Express 17, 2880–2891 (2009). 2. C. L. Hsieh, R. Grange, Y. Pu, and D. Psaltis, "Bioconjugation of barium titanate nanocrystals with immunoglobulin G antibody for second harmonic radiation imaging probes," Biomaterials 31, 2272–2277 (2010). 3. C. L. Hsieh, Y. Pu, R. Grange, and D. Psaltis, "Second harmonic generation from nanocrystals under linearly and circularly polarized excitations," Opt. Express 18, 11917–11932 (2010). 4. C. L. Hsieh, Y. Pu, R. Grange, and D. Psaltis, "Digital phase conjugation of second harmonic radiation emitted by nanoparticles in turbid media," Opt. Express 18, 12283–12290 (2010). 5. C. L. Hsieh, Y. Pu, R. Grange, G. Laporte, and D. Psaltis, "Imaging through turbid layers by scanning the phase conjugated second harmonic radiation from a nanoparticle," Opt. Express 18, 20723–20731 (2010). iv Acknowledgements During my five-year Ph.D. studies, I have thought a lot about science and life, but I have never thought of the moment of writing the acknowledgements of my thesis. At this moment, after finishing writing six chapters of my thesis, I realize the acknowledgment is probably one of the most difficult parts for me to complete. -
Super-Resolution Imaging by Dielectric Superlenses: Tio2 Metamaterial Superlens Versus Batio3 Superlens
hv photonics Article Super-Resolution Imaging by Dielectric Superlenses: TiO2 Metamaterial Superlens versus BaTiO3 Superlens Rakesh Dhama, Bing Yan, Cristiano Palego and Zengbo Wang * School of Computer Science and Electronic Engineering, Bangor University, Bangor LL57 1UT, UK; [email protected] (R.D.); [email protected] (B.Y.); [email protected] (C.P.) * Correspondence: [email protected] Abstract: All-dielectric superlens made from micro and nano particles has emerged as a simple yet effective solution to label-free, super-resolution imaging. High-index BaTiO3 Glass (BTG) mi- crospheres are among the most widely used dielectric superlenses today but could potentially be replaced by a new class of TiO2 metamaterial (meta-TiO2) superlens made of TiO2 nanoparticles. In this work, we designed and fabricated TiO2 metamaterial superlens in full-sphere shape for the first time, which resembles BTG microsphere in terms of the physical shape, size, and effective refractive index. Super-resolution imaging performances were compared using the same sample, lighting, and imaging settings. The results show that TiO2 meta-superlens performs consistently better over BTG superlens in terms of imaging contrast, clarity, field of view, and resolution, which was further supported by theoretical simulation. This opens new possibilities in developing more powerful, robust, and reliable super-resolution lens and imaging systems. Keywords: super-resolution imaging; dielectric superlens; label-free imaging; titanium dioxide Citation: Dhama, R.; Yan, B.; Palego, 1. Introduction C.; Wang, Z. Super-Resolution The optical microscope is the most common imaging tool known for its simple de- Imaging by Dielectric Superlenses: sign, low cost, and great flexibility.