bioRxiv preprint doi: https://doi.org/10.1101/2021.04.28.441862; this version posted April 29, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license. 1 A Single Cell Atlas of Spared Tissue Below a Spinal Cord Injury Reveals Cellular Mechanisms of Repair 2 Kaya J.E. Matson1, Daniel E. Russ2, Claudia Kathe3,4, Dragan Maric5, Isabelle Hua1, Jonathan Krynitsky6, 3 Randall Pursley6, Anupama Sathyamurthy1,7, Jordan W. Squair3,4, Gregoire Courtine3,4, Ariel J. Levine1,* 4 5 1Spinal Circuits and Plasticity Unit, National Institute of Neurological Disorders and Stroke, National Institutes of Health, 6 Bethesda, MD, USA 7 2 Division of Cancer Epidemiology and Genetics, Data Science Research Group, National Cancer Institute, NIH, Rockville, MD, 8 USA 9 3 Center for Neuroprosthetics and Brain Mind Institute, Faculty of Life Sciences, École Polytechnique Fédérale de Lausanne 10 (EPFL), Lausanne, Switzerland 11 4 NeuroRestore, Department of Clinical Neuroscience, Lausanne University Hospital (CHUV) and University of Lausanne (UNIL), 12 Lausanne, Switzerland 13 5 National Institute of Neurological Disorders and Stroke, Bethesda, MD, USA 14 6 Signal Processing and Instrumentation Section, Center for Information Technology, National Institutes of Health, Bethesda, 15 MD, USA 16 7 Present address: Centre for Neuroscience, Indian Institute of Science, Bangalore, India 17 18 *Corresponding Author:
[email protected] 19 20 Abstract: 21 After spinal cord injury (SCI), the “spared” tissue below the lesion contains undamaged cells that could 22 support or augment recovery, but targeting these cells requires a clearer understanding of their injury 23 responses and capacity for repair.