Adaptive Radiation and Climate Changes at the Eocene- Oligocene Boundary
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Evolution of the Patellar Sesamoid Bone in Mammals
A peer-reviewed version of this preprint was published in PeerJ on 21 March 2017. View the peer-reviewed version (peerj.com/articles/3103), which is the preferred citable publication unless you specifically need to cite this preprint. Samuels ME, Regnault S, Hutchinson JR. 2017. Evolution of the patellar sesamoid bone in mammals. PeerJ 5:e3103 https://doi.org/10.7717/peerj.3103 Evolution of the patellar sesamoid bone in mammals Mark E Samuels 1, 2 , Sophie Regnault 3 , John R Hutchinson Corresp. 3 1 Department of Medicine, University of Montreal, Montreal, Quebec, Canada 2 Centre de Recherche du CHU Ste-Justine, Montreal, Quebec, Canada 3 Structure & Motion Laboratory, Department of Comparative Biomedical Sciences, The Royal Veterinary College, Hatfield, Hertfordshire, United Kingdom Corresponding Author: John R Hutchinson Email address: [email protected] The patella is a sesamoid bone located in the major extensor tendon of the knee joint, in the hindlimb of many tetrapods. Although numerous aspects of knee morphology are ancient and conserved among most tetrapods, the evolutionary occurrence of an ossified patella is highly variable. Among extant (crown clade) groups it is found in most birds, most lizards, the monotreme mammals and almost all placental mammals, but it is absent in most marsupial mammals as well as many reptiles. Here we integrate data from the literature and first-hand studies of fossil and recent skeletal remains to reconstruct the evolution of the mammalian patella. We infer that bony patellae most likely evolved between four to six times in crown group Mammalia: in monotremes, in the extinct multituberculates, in one or more stem-mammal genera outside of therian or eutherian mammals, and up to three times in therian mammals. -
Chronostratigraphy of the Mammal-Bearing Paleocene of South America 51
Thierry SEMPERE biblioteca Y. Joirriiol ofSoiiih Ainorirari Euirli Sciriin~r.Hit. 111. No. 1, pp. 49-70, 1997 Pergamon Q 1‘197 PublisIlcd hy Elscvicr Scicncc Ltd All rights rescrvcd. Printed in Grcnt nrilsin PII: S0895-9811(97)00005-9 0895-9X 11/97 t I7.ol) t o.(x) -. ‘Inshute qfI Human Origins, 1288 9th Street, Berkeley, California 94710, USA ’Orstom, 13 rue Geoffroy l’Angevin, 75004 Paris, France 3Department of Geosciences, The University of Arizona, Tucson, Arizona 85721, USA Absfract - Land mammal faunas of Paleocene age in the southern Andean basin of Bolivia and NW Argentina are calibrated by regional sequence stratigraphy and rnagnetostratigraphy. The local fauna from Tiupampa in Bolivia is -59.0 Ma, and is thus early Late Paleocene in age. Taxa from the lower part of the Lumbrera Formation in NW Argentina (long regarded as Early Eocene) are between -58.0-55.5 Ma, and thus Late Paleocene in age. A reassessment of the ages of local faunas from lhe Rfo Chico Formation in the San Jorge basin, Patagonia, southern Argentina, shows that lhe local fauna from the Banco Negro Infeiior is -60.0 Ma, mak- ing this the most ancient Cenozoic mammal fauna in South,America. Critical reevaluation the ltaboraí fauna and associated or All geology in SE Brazil favors lhe interpretation that it accumulated during a sea-level lowsland between -$8.2-56.5 Ma. known South American Paleocene land inammal faunas are thus between 60.0 and 55.5 Ma (i.e. Late Paleocene) and are here assigned to the Riochican Land Maminal Age, with four subages (from oldest to youngest: Peligrian, Tiupampian, Ilaboraian, Riochican S.S.). -
Classification of Mammals 61
© Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FORCHAPTER SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION Classification © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC 4 NOT FORof SALE MammalsOR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC. NOT FOR SALE OR DISTRIBUTION. 2ND PAGES 9781284032093_CH04_0060.indd 60 8/28/13 12:08 PM CHAPTER 4: Classification of Mammals 61 © Jones Despite& Bartlett their Learning,remarkable success, LLC mammals are much less© Jones stress & onBartlett the taxonomic Learning, aspect LLCof mammalogy, but rather as diverse than are most invertebrate groups. This is probably an attempt to provide students with sufficient information NOT FOR SALE OR DISTRIBUTION NOT FORattributable SALE OR to theirDISTRIBUTION far greater individual size, to the high on the various kinds of mammals to make the subsequent energy requirements of endothermy, and thus to the inabil- discussions of mammalian biology meaningful. -
A Dated Phylogeny of Marsupials Using a Molecular Supermatrix and Multiple Fossil Constraints
Journal of Mammalogy, 89(1):175–189, 2008 A DATED PHYLOGENY OF MARSUPIALS USING A MOLECULAR SUPERMATRIX AND MULTIPLE FOSSIL CONSTRAINTS ROBIN M. D. BECK* School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia Downloaded from https://academic.oup.com/jmammal/article/89/1/175/1020874 by guest on 25 September 2021 Phylogenetic relationships within marsupials were investigated based on a 20.1-kilobase molecular supermatrix comprising 7 nuclear and 15 mitochondrial genes analyzed using both maximum likelihood and Bayesian approaches and 3 different partitioning strategies. The study revealed that base composition bias in the 3rd codon positions of mitochondrial genes misled even the partitioned maximum-likelihood analyses, whereas Bayesian analyses were less affected. After correcting for base composition bias, monophyly of the currently recognized marsupial orders, of Australidelphia, and of a clade comprising Dasyuromorphia, Notoryctes,and Peramelemorphia, were supported strongly by both Bayesian posterior probabilities and maximum-likelihood bootstrap values. Monophyly of the Australasian marsupials, of Notoryctes þ Dasyuromorphia, and of Caenolestes þ Australidelphia were less well supported. Within Diprotodontia, Burramyidae þ Phalangeridae received relatively strong support. Divergence dates calculated using a Bayesian relaxed molecular clock and multiple age constraints suggested at least 3 independent dispersals of marsupials from North to South America during the Late Cretaceous or early Paleocene. Within the Australasian clade, the macropodine radiation, the divergence of phascogaline and dasyurine dasyurids, and the divergence of perameline and peroryctine peramelemorphians all coincided with periods of significant environmental change during the Miocene. An analysis of ‘‘unrepresented basal branch lengths’’ suggests that the fossil record is particularly poor for didelphids and most groups within the Australasian radiation. -
A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes
J Mammal Evol DOI 10.1007/s10914-007-9062-6 ORIGINAL PAPER A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes Robert W. Meredith & Michael Westerman & Judd A. Case & Mark S. Springer # Springer Science + Business Media, LLC 2007 Abstract Even though marsupials are taxonomically less diverse than placentals, they exhibit comparable morphological and ecological diversity. However, much of their fossil record is thought to be missing, particularly for the Australasian groups. The more than 330 living species of marsupials are grouped into three American (Didelphimorphia, Microbiotheria, and Paucituberculata) and four Australasian (Dasyuromorphia, Diprotodontia, Notoryctemorphia, and Peramelemorphia) orders. Interordinal relationships have been investigated using a wide range of methods that have often yielded contradictory results. Much of the controversy has focused on the placement of Dromiciops gliroides (Microbiotheria). Studies either support a sister-taxon relationship to a monophyletic Australasian clade or a nested position within the Australasian radiation. Familial relationships within the Diprotodontia have also proved difficult to resolve. Here, we examine higher-level marsupial relationships using a nuclear multigene molecular data set representing all living orders. Protein-coding portions of ApoB, BRCA1, IRBP, Rag1, and vWF were analyzed using maximum parsimony, maximum likelihood, and Bayesian methods. Two different Bayesian relaxed molecular clock methods were employed to construct a timescale for marsupial evolution and estimate the unrepresented basal branch length (UBBL). Maximum likelihood and Bayesian results suggest that the root of the marsupial tree is between Didelphimorphia and all other marsupials. All methods provide strong support for the monophyly of Australidelphia. Within Australidelphia, Dromiciops is the sister-taxon to a monophyletic Australasian clade. -
Early Miocene Paleobiology in Patagonia. High-Latitude Paleocommunities of the Santa Cruz Formation Sergio F
Early Miocene Paleobiology in Patagonia. High-Latitude Paleocommunities of the Santa Cruz Formation Sergio F. Vizcaino, Richard F. Kay, and M. Susana Bargo (eds.) Cambridge, UK: Cambridge University Press, 2012, 370 pp. (hardback), $155.00. ISBN-13: 9780521194617. Reviewed by SUSAN CACHEL Department of Anthropology, Rutgers University, New Brunswick, NJ 08901-1414, USA; [email protected] his edited volume deals with new fossil flora and fauna of these chapters. These appendices list museum catalog Tfrom the Atlantic Coast of Patagonia, South America, numbers, along with collection area and short descriptions. dating to 18–16 mya. Two of the editors are affiliated with This volume therefore is a crucial resource for researchers the Museo de la Plata, Argentina, and a plethora of Argen- studying mammal evolution, especially for those studying tine colleagues contribute chapters and reviewed prelimi- processes like convergent evolution. New black-and-white nary drafts. The volume thus has a spectacularly interna- illustrations reconstruct details of life on the ancient land- tional authorship. Abstracts of each chapter appear in both scapes. English and Spanish. The collection of the fossils is an epic in itself. Because In contrast to the cold and dismal climate of modern fossils were embedded in sandstone beach rock in the in- Patagonia, Patagonia 18–16 mya was much warmer and hu- tertidal zone, retrieval of these specimens often entailed mid, with mixed forests and grasslands. The Andes Moun- hastily using both geological hammers and jack hammers tains were much lower in elevation, which allowed an east- to remove blocks of sediment before the tide turned, and ward expansion of habitats now found today on the lower cold Atlantic seawater again swept over the collecting area. -
Perissodactyla: Tapirus) Hints at Subtle Variations in Locomotor Ecology
JOURNAL OF MORPHOLOGY 277:1469–1485 (2016) A Three-Dimensional Morphometric Analysis of Upper Forelimb Morphology in the Enigmatic Tapir (Perissodactyla: Tapirus) Hints at Subtle Variations in Locomotor Ecology Jamie A. MacLaren1* and Sandra Nauwelaerts1,2 1Department of Biology, Universiteit Antwerpen, Building D, Campus Drie Eiken, Universiteitsplein, Wilrijk, Antwerp 2610, Belgium 2Centre for Research and Conservation, Koninklijke Maatschappij Voor Dierkunde (KMDA), Koningin Astridplein 26, Antwerp 2018, Belgium ABSTRACT Forelimb morphology is an indicator for order Perissodactyla (odd-toed ungulates). Modern terrestrial locomotor ecology. The limb morphology of the tapirs are widely accepted to belong to a single enigmatic tapir (Perissodactyla: Tapirus) has often been genus (Tapirus), containing four extant species compared to that of basal perissodactyls, despite the lack (Hulbert, 1973; Ruiz-Garcıa et al., 1985) and sev- of quantitative studies comparing forelimb variation in eral regional subspecies (Padilla and Dowler, 1965; modern tapirs. Here, we present a quantitative assess- ment of tapir upper forelimb osteology using three- Wilson and Reeder, 2005): the Baird’s tapir (T. dimensional geometric morphometrics to test whether bairdii), lowland tapir (T. terrestris), mountain the four modern tapir species are monomorphic in their tapir (T. pinchaque), and the Malayan tapir (T. forelimb skeleton. The shape of the upper forelimb bones indicus). Extant tapirs primarily inhabit tropical across four species (T. indicus; T. bairdii; T. terrestris; T. rainforest, with some populations also occupying pinchaque) was investigated. Bones were laser scanned wet grassland and chaparral biomes (Padilla and to capture surface morphology and 3D landmark analysis Dowler, 1965; Padilla et al., 1996). was used to quantify shape. -
Monodelphis Domestica in the Opossum Λ Conservation Of
Marsupial Light Chains: Complexity and Conservation of λ in the Opossum Monodelphis domestica This information is current as Julie E. Lucero, George H. Rosenberg and Robert D. Miller of September 29, 2021. J Immunol 1998; 161:6724-6732; ; http://www.jimmunol.org/content/161/12/6724 Downloaded from References This article cites 35 articles, 10 of which you can access for free at: http://www.jimmunol.org/content/161/12/6724.full#ref-list-1 Why The JI? Submit online. http://www.jimmunol.org/ • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average by guest on September 29, 2021 Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 1998 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. Marsupial Light Chains: Complexity and Conservation of l in the Opossum Monodelphis domestica1,2 Julie E. Lucero, George H. Rosenberg, and Robert D. Miller3 The Igl chains in the South American opossum, Monodelphis domestica, were analyzed at the expressed cDNA and genomic organization level, the first described for a nonplacental mammal. -
Constraints on the Timescale of Animal Evolutionary History
Palaeontologia Electronica palaeo-electronica.org Constraints on the timescale of animal evolutionary history Michael J. Benton, Philip C.J. Donoghue, Robert J. Asher, Matt Friedman, Thomas J. Near, and Jakob Vinther ABSTRACT Dating the tree of life is a core endeavor in evolutionary biology. Rates of evolution are fundamental to nearly every evolutionary model and process. Rates need dates. There is much debate on the most appropriate and reasonable ways in which to date the tree of life, and recent work has highlighted some confusions and complexities that can be avoided. Whether phylogenetic trees are dated after they have been estab- lished, or as part of the process of tree finding, practitioners need to know which cali- brations to use. We emphasize the importance of identifying crown (not stem) fossils, levels of confidence in their attribution to the crown, current chronostratigraphic preci- sion, the primacy of the host geological formation and asymmetric confidence intervals. Here we present calibrations for 88 key nodes across the phylogeny of animals, rang- ing from the root of Metazoa to the last common ancestor of Homo sapiens. Close attention to detail is constantly required: for example, the classic bird-mammal date (base of crown Amniota) has often been given as 310-315 Ma; the 2014 international time scale indicates a minimum age of 318 Ma. Michael J. Benton. School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, U.K. [email protected] Philip C.J. Donoghue. School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, U.K. [email protected] Robert J. -
OPOSSUM Didelphis Virginiana
OPOSSUM Didelphis virginiana The Virginia opossum, Didelphis virginiana, is the only marsupial (pouched animal) native to North America. The opossum is not a native species to Vermont, but a population has become established here. The opossum is mostly active at night, being what is referred to as ‘nocturnal.’ They are very good climbers and capable swimmers. These two skills help the opossum avoid predators. It is well known for faking death (also called ‘playing possum’) as another means of outwitting its enemies. The opossum adapts to a wide variety of habitats which has led to its widespread distribution throughout the United States. Vermont Wildlife Fact Sheet Physical Description Opossums breed every other areas near water sources. year, having one litter every They have become very The fur of the Virginia two years. Opossums reach common in urban, suburban, opossum is grayish white in the age of sexual maturity at 6 and farming areas. The color and covers the whole to 7 months. opossum is a wanderer and body except the ears and tail. does not stick to a specific They are about the size of a Food Items territory. The opossum uses large house cat, weighing abandoned burrows, tree between 9 and 13 pounds and The opossum is an cavities, hollow logs, attics, having a body length of 24 to insectivore and an omnivore. garages, or building 40 inches. The opossum has a This means they have a foundations. prehensile tail, one which is varied diet of insects, worms, adapted for grasping and fruits, nuts, and carrion (dead hanging. animals). -
Dominance Relationships in Captive Male Bare-Tailed Woolly Opossum (Caluromys Phiiander, Marsupialia: Didelphidae)
DOMINANCE RELATIONSHIPS IN CAPTIVE MALE BARE-TAILED WOOLLY OPOSSUM (CALUROMYS PHIIANDER, MARSUPIALIA: DIDELPHIDAE) M.-L. GUILLEMIN*, M. ATRAMENTOWICZ* & P. CHARLES-DOMINIQUE* RÉSUMÉ Au cours de ce travail nous avons voulu tester en captivité l'importance du poids corporel dans l'établissement de relations de dominance chez les mâles Caluromysphilander, chez qui des compétitions inter-mâles ont été étudiées. Les comportements et l'évolution de différents paramètres physiologiques ont été observés durant 18 expérimentations effectuées respectivement sur 6 groupes de deux mâles et sur 12 groupes de deux mâles et une femelle. Des relations de dominance-subordination se mettent en place même en l'absence de femelle, mais la compétition est plus forte dans les groupes comprenant une femelle. Dans ces conditions expérimentales, le rang social est basé principalement sur le poids et l'âge. Lorsque la relation de dominance est mise en place, le rang social des mâles est bien défini et il reste stable jusqu'à la fin de l'expérimentation. Ces relations de dominance stables pourraient profiter aux dominants et aux dominés en minimisant les risques de blessures sérieuses. Les mâles montrent des signes typiques caractérisant un stress social : une baisse du poids et de l'hématocrite, les dominés étant plus stressés que les dominants. Chez les mâles dominants, la baisse de l'hématocrite est plus faible que chez les dominés, et la concentration de testostérone dans le sang diminue plus que chez les dominés. Au niveau comportemental, les dominants effectuent la plupart des interactions agonistiques << offensives » et plus d'investigations olfactives de leur environnement (flairage-léchage) que les dominés. -
Fossil Calibration Schemes the Soft Explosive Model Of
Supplemental File 2: Fossil calibration schemes The soft explosive model of placental mammal evolution Matthew J. Phillips*,1 and Carmelo Fruciano1 1School of Earth, Environmental and Biological Sciences, Queensland University of Technology, Brisbane, Australia *Corresponding author: E-mail: [email protected] Contents Fossil Calibration schemes ......................................................................................................... 1 Table S2 .................................................................................................................................. 1 New calibrations ..................................................................................................................... 3 Figure S2 ................................................................................................................................ 7 References ............................................................................................................................ 10 Calibration schemes Table S2. Soft-bound calibrations employed for the MCMCtree analyses of the 122-taxon, 128- taxon, and 57-taxon empirical datasets. Calibrations among placental mammals are largely based on dos Reis et al. [1], hence the designations dR32 and dR40 (numbers indicating the number of calibrations). Several new calibrations, including some inspired by Springer et al. [2], are described below the table. Also note that the 122-taxon dR40, 128-taxon and 57-taxon analyses employ bounds as listed below, whereas the dR32 analyses,